Wall clock time and date at job start Mon Mar 30 2020 02:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35993 * 117.00013 * 2 1 4 4 C 1.38564 * 120.07415 * 359.97438 * 3 2 1 5 5 C 1.38238 * 119.99933 * 180.02562 * 4 3 2 6 6 C 1.38249 * 120.14955 * 0.02749 * 5 4 3 7 7 C 1.38242 * 120.14529 * 359.97438 * 6 5 4 8 8 C 1.38564 * 119.99922 * 359.97438 * 7 6 5 9 9 O 1.35998 * 120.07372 * 179.97438 * 8 7 6 10 10 C 1.42904 * 116.99840 * 0.02562 * 9 8 7 11 11 C 1.52999 * 109.46867 * 179.97438 * 10 9 8 12 12 N 1.46502 * 109.46892 * 65.00476 * 11 10 9 13 13 C 1.36937 * 119.99773 * 269.99735 * 12 11 10 14 14 H 1.07999 * 120.00031 * 143.95345 * 13 12 11 15 15 C 1.38814 * 120.00179 * 323.95532 * 13 12 11 16 16 N 1.31624 * 119.99697 * 339.43084 * 15 13 12 17 17 Si 1.86798 * 120.00388 * 159.42849 * 15 13 12 18 18 H 1.48499 * 109.46964 * 59.99760 * 17 15 13 19 19 H 1.48500 * 109.47229 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46982 * 299.99835 * 17 15 13 21 21 C 1.46497 * 120.00488 * 89.99616 * 12 11 10 22 22 C 1.52994 * 117.50146 * 183.23510 * 21 12 11 23 23 C 1.53002 * 117.50118 * 114.57408 * 21 12 11 24 24 H 1.09001 * 109.46893 * 300.00533 * 1 2 3 25 25 H 1.09003 * 109.47069 * 60.00790 * 1 2 3 26 26 H 1.08999 * 109.47154 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.00070 * 0.28346 * 4 3 2 28 28 H 1.07998 * 119.92639 * 179.97438 * 5 4 3 29 29 H 1.08005 * 119.93283 * 179.97438 * 6 5 4 30 30 H 1.08000 * 120.00061 * 180.02562 * 7 6 5 31 31 H 1.08996 * 109.47174 * 299.99888 * 10 9 8 32 32 H 1.09005 * 109.47024 * 60.00248 * 10 9 8 33 33 H 1.09001 * 109.47074 * 184.99863 * 11 10 9 34 34 H 1.08997 * 109.47420 * 305.00402 * 11 10 9 35 35 H 0.96996 * 119.99944 * 175.48506 * 16 15 13 36 36 H 1.09003 * 115.54862 * 328.90506 * 21 12 11 37 37 H 1.09005 * 117.50161 * 0.02562 * 22 21 12 38 38 H 1.09002 * 117.50047 * 145.01948 * 22 21 12 39 39 H 1.09003 * 117.49828 * 214.98378 * 23 21 12 40 40 H 1.08998 * 117.49689 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9224 3.6057 -0.0011 6 6 3.3029 3.6798 -0.0016 7 6 4.0603 2.5233 -0.0012 8 6 3.4359 1.2863 0.0005 9 8 4.1795 0.1476 0.0004 10 6 5.6004 0.3006 -0.0008 11 6 6.2618 -1.0790 0.0000 12 7 5.9457 -1.7727 -1.2510 13 6 4.8292 -2.5612 -1.3334 14 1 4.2621 -2.6001 -2.2517 15 6 4.4262 -3.3106 -0.2366 16 7 5.2865 -3.5949 0.7181 17 14 2.6630 -3.9155 -0.1155 18 1 2.3582 -4.7881 -1.2777 19 1 2.4894 -4.6862 1.1419 20 1 1.7397 -2.7524 -0.1140 21 6 6.8240 -1.6230 -2.4139 22 6 6.4000 -2.3112 -3.7128 23 6 7.5718 -2.8665 -2.8993 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 0.2147 2.3197 0.0037 28 1 1.3342 4.5114 -0.0019 29 1 3.7909 4.6434 -0.0025 30 1 5.1386 2.5840 -0.0012 31 1 5.9059 0.8500 -0.8912 32 1 5.9073 0.8508 0.8888 33 1 7.3421 -0.9639 0.0887 34 1 5.8880 -1.6607 0.8426 35 1 4.9900 -4.0617 1.5150 36 1 7.3356 -0.6640 -2.4962 37 1 5.4672 -2.8752 -3.7023 38 1 6.6329 -1.8053 -4.6498 39 1 8.5751 -2.7255 -3.3013 40 1 7.4105 -3.7959 -2.3532 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355969760.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:22 Heat of formation + Delta-G solvation = -8.574822 kcal Electronic energy + Delta-G solvation = -22223.094746 eV Core-core repulsion = 19005.104572 eV Total energy + Delta-G solvation = -3217.990174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.31876 -39.48046 -38.57935 -37.59690 -35.28996 -32.96193 -31.18160 -30.94920 -29.46490 -28.04364 -26.30618 -24.13351 -23.10728 -22.99627 -22.31625 -21.36809 -19.50453 -18.36483 -18.05136 -17.32541 -17.05449 -16.89770 -16.51601 -15.97433 -15.66071 -15.52634 -15.45709 -15.12497 -14.42145 -13.97022 -13.69402 -13.56159 -13.34561 -12.95751 -12.91573 -12.57534 -12.50186 -12.38089 -12.09758 -11.97308 -11.96538 -11.89630 -11.59622 -11.46981 -11.34420 -10.88524 -10.38263 -9.62561 -8.64150 -8.47987 -7.73423 -5.37283 0.39823 0.58461 1.41491 1.47396 1.61297 2.49029 2.54675 2.60850 2.86473 3.22139 3.47740 3.50446 3.93053 4.06632 4.15539 4.28297 4.30682 4.34536 4.37298 4.43761 4.49422 4.54244 4.57649 4.61691 4.64056 4.73092 4.80763 4.94120 4.98490 5.08028 5.33938 5.36959 5.42687 5.55904 5.59499 5.69637 5.79498 5.89979 6.35651 6.51423 6.91513 7.21985 7.91636 8.37783 9.17508 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.007237 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.844980 B = 3868.135214 C = 4957.161088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.060 3.940 4 C -0.174 4.174 5 C -0.126 4.126 6 C -0.115 4.115 7 C -0.187 4.187 8 C 0.072 3.928 9 O -0.305 6.305 10 C 0.054 3.946 11 C 0.139 3.861 12 N -0.561 5.561 13 C -0.230 4.230 14 H 0.045 0.955 15 C -0.025 4.025 16 N -0.917 5.917 17 Si 0.934 3.066 18 H -0.284 1.284 19 H -0.298 1.298 20 H -0.268 1.268 21 C 0.100 3.900 22 C -0.186 4.186 23 C -0.212 4.212 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.154 0.846 28 H 0.159 0.841 29 H 0.156 0.844 30 H 0.142 0.858 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.246 0.754 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.715 15.425 -1.771 16.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.015 3.985 4 C -0.192 4.192 5 C -0.144 4.144 6 C -0.133 4.133 7 C -0.206 4.206 8 C 0.025 3.975 9 O -0.219 6.219 10 C -0.023 4.023 11 C 0.012 3.988 12 N -0.279 5.279 13 C -0.360 4.360 14 H 0.062 0.938 15 C -0.222 4.222 16 N -0.563 5.563 17 Si 0.763 3.237 18 H -0.210 1.210 19 H -0.224 1.224 20 H -0.193 1.193 21 C -0.008 4.008 22 C -0.224 4.224 23 C -0.253 4.253 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.172 0.828 28 H 0.177 0.823 29 H 0.174 0.826 30 H 0.160 0.840 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.133 0.867 37 H 0.087 0.913 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.715 14.879 -1.633 15.694 hybrid contribution -0.923 -0.802 0.294 1.258 sum -5.638 14.077 -1.339 15.223 Atomic orbital electron populations 1.23238 0.77423 1.04312 1.02483 1.86310 1.22753 1.27136 1.89279 1.18832 0.89854 0.85970 1.03826 1.21345 1.00735 0.91052 1.06099 1.21204 0.94798 0.97321 1.01037 1.21230 0.94082 0.98090 0.99916 1.21329 1.01222 0.90864 1.07155 1.19123 0.89509 0.87729 1.01121 1.86483 1.19634 1.27954 1.87792 1.23631 0.78175 1.00771 0.99747 1.21056 0.96181 0.89919 0.91596 1.43450 1.24503 1.51557 1.08356 1.18807 1.00950 1.17303 0.98946 0.93751 1.25469 1.00123 0.97377 0.99212 1.70092 1.33160 1.43314 1.09707 0.85842 0.83830 0.77894 0.76089 1.20992 1.22433 1.19350 1.21571 0.96253 0.94454 0.88568 1.23014 0.98676 1.05300 0.95453 1.23266 0.96021 1.00345 1.05676 0.90978 0.91090 0.88839 0.82846 0.82319 0.82622 0.84044 0.92682 0.91865 0.91456 0.90785 0.94479 0.86660 0.91322 0.87132 0.87687 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.81 113.37 1.11 1.67 16 2 O -0.34 -14.15 10.28 -79.60 -0.82 -14.97 16 3 C 0.06 2.26 6.70 22.57 0.15 2.41 16 4 C -0.17 -4.72 9.04 22.35 0.20 -4.52 16 5 C -0.13 -2.80 10.04 22.27 0.22 -2.58 16 6 C -0.12 -2.71 10.04 22.27 0.22 -2.49 16 7 C -0.19 -5.72 9.04 22.35 0.20 -5.52 16 8 C 0.07 2.84 6.70 22.57 0.15 2.99 16 9 O -0.31 -14.43 9.40 -79.66 -0.75 -15.17 16 10 C 0.05 2.17 5.08 71.98 0.37 2.53 16 11 C 0.14 6.52 5.76 86.38 0.50 7.01 16 12 N -0.56 -28.37 2.75 -678.04 -1.87 -30.24 16 13 C -0.23 -13.13 8.11 84.03 0.68 -12.45 16 14 H 0.04 2.64 6.58 -2.91 -0.02 2.62 16 15 C -0.03 -1.50 4.99 84.86 0.42 -1.07 16 16 N -0.92 -55.68 11.30 21.65 0.24 -55.44 16 17 Si 0.93 48.45 29.60 68.60 2.03 50.48 16 18 H -0.28 -14.30 7.11 99.48 0.71 -13.60 16 19 H -0.30 -15.39 7.11 99.48 0.71 -14.68 16 20 H -0.27 -13.92 7.11 99.48 0.71 -13.21 16 21 C 0.10 4.20 6.56 44.99 0.30 4.50 16 22 C -0.19 -7.36 9.80 30.62 0.30 -7.06 16 23 C -0.21 -8.55 10.36 30.62 0.32 -8.23 16 24 H 0.07 1.62 7.66 -2.39 -0.02 1.60 16 25 H 0.07 1.63 7.67 -2.39 -0.02 1.61 16 26 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.15 3.20 6.30 -2.91 -0.02 3.18 16 28 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 30 H 0.14 3.84 6.30 -2.91 -0.02 3.82 16 31 H 0.06 2.02 7.66 -2.39 -0.02 2.00 16 32 H 0.06 2.18 7.66 -2.38 -0.02 2.16 16 33 H 0.07 2.82 8.07 -2.39 -0.02 2.80 16 34 H 0.07 4.12 5.36 -2.39 -0.01 4.11 16 35 H 0.25 14.67 8.32 -92.71 -0.77 13.90 16 36 H 0.12 4.12 8.14 -2.39 -0.02 4.10 16 37 H 0.07 3.12 6.39 -2.38 -0.02 3.10 16 38 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 39 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 40 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -72.87 331.49 5.02 -67.85 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 1.03 Total: 20.29 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 5.15 Total: -22.80 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -1.62 Total: -85.68 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -1.57 Total: -30.15 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.48 kcal Total: -72.87 5.02 -67.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355969760.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.275 kcal (2) G-P(sol) polarization free energy of solvation -72.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds