Wall clock time and date at job start Mon Mar 30 2020 01:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42908 * 113.99866 * 2 1 4 4 C 1.53004 * 109.46971 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46736 * 175.24735 * 4 3 2 6 6 C 1.53000 * 109.47317 * 55.23971 * 4 3 2 7 7 C 1.50700 * 109.46924 * 175.00137 * 6 4 3 8 8 C 1.38236 * 120.00035 * 90.00209 * 7 6 4 9 9 C 1.38227 * 119.99988 * 180.02562 * 8 7 6 10 10 C 1.38230 * 120.00267 * 0.02562 * 9 8 7 11 11 C 1.38233 * 120.00069 * 0.25476 * 10 9 8 12 12 C 1.38238 * 119.99947 * 270.02371 * 7 6 4 13 13 N 1.46507 * 109.46745 * 295.24051 * 4 3 2 14 14 C 1.46507 * 119.99808 * 65.91401 * 13 4 3 15 15 C 1.34773 * 119.99926 * 245.91656 * 13 4 3 16 16 O 1.21687 * 120.00317 * 359.97438 * 15 13 4 17 17 C 1.46375 * 120.00002 * 180.02562 * 15 13 4 18 18 H 1.08007 * 120.00000 * 354.95984 * 17 15 13 19 19 C 1.40047 * 120.00125 * 174.95373 * 17 15 13 20 20 N 1.30672 * 120.00058 * 5.25641 * 19 17 15 21 21 Si 1.86794 * 120.00030 * 185.24845 * 19 17 15 22 22 H 1.48504 * 109.47051 * 95.00118 * 21 19 17 23 23 H 1.48504 * 109.47404 * 214.99819 * 21 19 17 24 24 H 1.48501 * 109.47463 * 335.00662 * 21 19 17 25 25 H 1.08998 * 109.47427 * 60.00017 * 1 2 3 26 26 H 1.09000 * 109.47206 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47282 * 299.99919 * 1 2 3 28 28 H 1.08995 * 109.47070 * 60.00081 * 3 2 1 29 29 H 1.08999 * 109.46895 * 299.99792 * 3 2 1 30 30 H 1.08993 * 109.46704 * 55.00004 * 6 4 3 31 31 H 1.09001 * 109.47055 * 295.00262 * 6 4 3 32 32 H 1.08001 * 119.99887 * 0.02562 * 8 7 6 33 33 H 1.08008 * 119.99880 * 179.97438 * 9 8 7 34 34 H 1.08006 * 120.00752 * 179.97438 * 10 9 8 35 35 H 1.08005 * 120.00530 * 179.72639 * 11 10 9 36 36 H 1.08000 * 119.99775 * 0.02562 * 12 7 6 37 37 H 1.08999 * 109.46750 * 95.66462 * 14 13 4 38 38 H 1.08997 * 109.46804 * 215.65836 * 14 13 4 39 39 H 1.08992 * 109.46787 * 335.66195 * 14 13 4 40 40 H 0.97000 * 120.00164 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9784 2.1770 -0.0858 6 6 3.9785 0.3248 -1.1860 7 6 5.4836 0.3067 -1.2586 8 6 6.1965 -0.6665 -0.5836 9 6 7.5771 -0.6829 -0.6498 10 6 8.2449 0.2742 -1.3905 11 6 7.5324 1.2509 -2.0608 12 6 6.1515 1.2635 -1.9999 13 7 3.9762 0.5588 1.2485 14 6 3.6212 -0.8334 1.5352 15 6 4.7081 1.2637 2.1338 16 8 5.0034 2.4199 1.8955 17 6 5.1490 0.6381 3.3816 18 1 4.8204 -0.3601 3.6307 19 6 5.9969 1.3339 4.2523 20 7 6.3121 2.5772 4.0027 21 14 6.6773 0.4847 5.7706 22 1 8.0228 -0.0663 5.4685 23 1 6.7817 1.4650 6.8812 24 1 5.7683 -0.6200 6.1691 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.5752 0.7424 -2.1085 31 1 3.6087 -0.6922 -1.0554 32 1 5.6747 -1.4141 -0.0046 33 1 8.1341 -1.4430 -0.1221 34 1 9.3237 0.2618 -1.4419 35 1 8.0544 2.0014 -2.6359 36 1 5.5945 2.0243 -2.5266 37 1 4.4406 -1.4865 1.2349 38 1 3.4374 -0.9488 2.6034 39 1 2.7217 -1.1005 0.9807 40 1 6.8991 3.0593 4.6060 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356673104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:15 Heat of formation + Delta-G solvation = -53.601488 kcal Electronic energy + Delta-G solvation = -22443.888629 eV Core-core repulsion = 19223.945953 eV Total energy + Delta-G solvation = -3219.942677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.23215 -38.02105 -36.89181 -34.46058 -32.39426 -31.99539 -30.38137 -29.81852 -26.70414 -26.03295 -25.66964 -24.77305 -22.05105 -21.67369 -20.50602 -18.61521 -16.80876 -16.31786 -15.95916 -15.65336 -15.32734 -15.09203 -14.68549 -14.57450 -14.01713 -13.91069 -13.41281 -12.90441 -12.72631 -12.34849 -12.17447 -11.95357 -11.77987 -11.63429 -11.50536 -11.25608 -10.99305 -10.90601 -10.77986 -10.67088 -10.37498 -10.19822 -10.17204 -10.02754 -9.35430 -8.79002 -8.36703 -8.14328 -7.47849 -7.05902 -6.13063 -4.55745 1.90248 1.95779 3.16286 3.23645 3.26711 4.04536 4.14514 4.30852 4.61331 4.67566 5.20609 5.32571 5.38712 5.45781 5.46333 5.55282 5.59461 5.70221 5.74446 5.75021 5.81112 5.92917 6.01665 6.10912 6.18671 6.24492 6.41365 6.50839 6.53186 6.67711 6.74974 6.86554 6.96433 7.04447 7.20184 7.40567 7.51588 7.55465 7.75987 8.24219 8.47184 9.09929 9.54065 10.65421 10.85326 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011759 B = 0.008285 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.642414 B = 3378.889454 C = 4956.984082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.054 3.946 4 C 0.157 3.843 5 H 0.105 0.895 6 C -0.084 4.084 7 C -0.064 4.064 8 C -0.098 4.098 9 C -0.118 4.118 10 C -0.130 4.130 11 C -0.123 4.123 12 C -0.119 4.119 13 N -0.631 5.631 14 C 0.095 3.905 15 C 0.561 3.439 16 O -0.580 6.580 17 C -0.540 4.540 18 H 0.070 0.930 19 C 0.088 3.912 20 N -0.767 5.767 21 Si 0.902 3.098 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.265 1.265 25 H 0.034 0.966 26 H 0.080 0.920 27 H 0.037 0.963 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.026 0.974 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.897 -6.273 -9.876 12.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.299 6.299 3 C -0.024 4.024 4 C 0.052 3.948 5 H 0.122 0.878 6 C -0.123 4.123 7 C -0.064 4.064 8 C -0.116 4.116 9 C -0.136 4.136 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.137 4.137 13 N -0.368 5.368 14 C -0.048 4.048 15 C 0.367 3.633 16 O -0.463 6.463 17 C -0.577 4.577 18 H 0.088 0.912 19 C -0.131 4.131 20 N -0.396 5.396 21 Si 0.727 3.273 22 H -0.199 1.199 23 H -0.206 1.206 24 H -0.189 1.189 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.521 -5.627 -9.930 12.276 hybrid contribution 0.176 -0.171 0.936 0.968 sum -4.344 -5.798 -8.994 11.549 Atomic orbital electron populations 1.22681 0.82469 1.02043 0.99502 1.87908 1.18524 1.28274 1.95172 1.23163 0.95173 0.84325 0.99722 1.20710 0.89762 0.98753 0.85619 0.87759 1.20923 0.91181 1.01977 0.98187 1.19763 0.95617 0.94882 0.96150 1.21096 0.93901 0.98866 0.97741 1.21062 0.94669 0.99088 0.98791 1.20992 0.99216 0.95932 0.98702 1.20974 0.94246 0.98492 1.00377 1.20931 0.94349 0.98306 1.00085 1.47817 1.57864 1.12435 1.18681 1.21612 0.98689 0.83545 1.00990 1.18197 0.76672 0.85249 0.83203 1.90577 1.59560 1.17985 1.78204 1.20983 1.30922 1.02304 1.03462 0.91157 1.25707 0.95034 0.94189 0.98166 1.70032 1.26913 1.08645 1.34043 0.86453 0.79727 0.79792 0.81364 1.19874 1.20556 1.18900 0.94722 0.90191 0.94422 0.92914 0.93663 0.91472 0.90362 0.86043 0.86700 0.86932 0.86858 0.86798 0.95588 0.92399 0.91048 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.75 7.03 -35.23 -0.25 -6.00 16 3 C 0.05 0.88 5.73 37.16 0.21 1.10 16 4 C 0.16 3.05 2.53 -67.92 -0.17 2.87 16 5 H 0.10 2.33 6.92 -51.93 -0.36 1.97 16 6 C -0.08 -1.39 4.42 -27.88 -0.12 -1.51 16 7 C -0.06 -1.16 4.95 -104.62 -0.52 -1.68 16 8 C -0.10 -1.81 9.19 -39.59 -0.36 -2.18 16 9 C -0.12 -2.07 10.05 -39.59 -0.40 -2.47 16 10 C -0.13 -2.17 10.05 -39.59 -0.40 -2.57 16 11 C -0.12 -2.03 10.05 -39.58 -0.40 -2.43 16 12 C -0.12 -2.04 9.70 -39.58 -0.38 -2.43 16 13 N -0.63 -14.17 2.14 -175.59 -0.38 -14.54 16 14 C 0.10 1.85 8.62 59.85 0.52 2.36 16 15 C 0.56 15.88 7.61 -12.99 -0.10 15.78 16 16 O -0.58 -18.68 14.37 5.20 0.07 -18.60 16 17 C -0.54 -15.31 8.76 -35.63 -0.31 -15.62 16 18 H 0.07 1.85 6.08 -52.48 -0.32 1.53 16 19 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 20 N -0.77 -23.25 11.85 55.55 0.66 -22.59 16 21 Si 0.90 20.50 29.56 -169.99 -5.03 15.48 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.26 -5.81 7.11 56.52 0.40 -5.40 16 25 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 31 H 0.08 1.25 6.72 -51.93 -0.35 0.91 16 32 H 0.12 2.18 5.59 -52.49 -0.29 1.89 16 33 H 0.11 1.78 8.06 -52.48 -0.42 1.35 16 34 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 35 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 36 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.03 0.48 5.75 -51.93 -0.30 0.18 16 38 H 0.06 1.17 6.37 -51.93 -0.33 0.84 16 39 H 0.07 1.24 4.92 -51.93 -0.26 0.98 16 40 H 0.27 7.35 8.29 -40.82 -0.34 7.02 16 LS Contribution 326.10 15.07 4.91 4.91 Total: -1.00 -34.42 326.10 -6.99 -41.40 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.56 Total: 4.85 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -1.42 Total: -4.91 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.28 Total: -37.14 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.17 Total: -24.60 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.42 -6.99 -41.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356673104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.198 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds