Wall clock time and date at job start Mon Mar 30 2020 01:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47248 * 2 1 4 4 C 1.42896 * 113.99957 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.47018 * 179.97438 * 4 3 2 6 6 C 1.38303 * 119.96525 * 269.97366 * 5 4 3 7 7 C 1.38262 * 120.14327 * 180.02562 * 6 5 4 8 8 C 1.38136 * 120.07025 * 359.67748 * 7 6 5 9 9 C 1.38856 * 119.92641 * 0.59942 * 8 7 6 10 10 N 1.39917 * 120.07116 * 179.69994 * 9 8 7 11 11 C 1.34779 * 120.00199 * 326.54865 * 10 9 8 12 12 O 1.21292 * 119.99752 * 354.72752 * 11 10 9 13 13 C 1.50697 * 120.00499 * 174.73002 * 11 10 9 14 14 C 1.53003 * 109.47280 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.46942 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99917 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99728 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00203 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47216 * 89.99386 * 19 17 15 21 21 H 1.48497 * 109.47285 * 210.00336 * 19 17 15 22 22 H 1.48509 * 109.46854 * 329.99869 * 19 17 15 23 23 C 1.38090 * 119.96719 * 89.99700 * 5 4 3 24 24 H 1.09000 * 109.47250 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46832 * 300.00063 * 1 2 3 26 26 H 1.08999 * 109.47266 * 60.00160 * 1 2 3 27 27 H 1.08998 * 109.46832 * 239.99937 * 2 1 3 28 28 H 1.08999 * 109.47266 * 119.99840 * 2 1 3 29 29 H 1.09000 * 109.47619 * 59.99806 * 4 3 2 30 30 H 1.09005 * 109.46904 * 299.99389 * 4 3 2 31 31 H 1.08003 * 119.92801 * 0.02647 * 6 5 4 32 32 H 1.07992 * 119.96523 * 179.97438 * 7 6 5 33 33 H 1.07988 * 120.04058 * 180.31809 * 8 7 6 34 34 H 0.97006 * 120.00500 * 146.55272 * 10 9 8 35 35 H 1.09001 * 109.47394 * 59.99674 * 13 11 10 36 36 H 1.09005 * 109.47037 * 299.99959 * 13 11 10 37 37 H 1.08999 * 109.46583 * 299.99484 * 14 13 11 38 38 H 1.08996 * 109.47091 * 59.99776 * 14 13 11 39 39 H 0.96998 * 120.00391 * 180.02562 * 18 17 15 40 40 H 1.08002 * 120.03489 * 359.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9161 -0.0012 6 6 3.9977 3.5831 -1.1996 7 6 4.3547 4.9188 -1.2044 8 6 4.5281 5.5932 -0.0114 9 6 4.3556 4.9250 1.1935 10 7 4.5366 5.6036 2.4037 11 6 5.4588 6.5820 2.4963 12 8 6.1970 6.8100 1.5613 13 6 5.5728 7.3928 3.7614 14 6 6.6878 8.4288 3.6045 15 6 6.8013 9.2400 4.8695 16 1 6.1443 9.0367 5.7022 17 6 7.7447 10.2410 4.9641 18 7 8.5458 10.4876 3.9506 19 14 7.8861 11.2461 6.5323 20 1 8.8491 10.5922 7.4543 21 1 8.3656 12.6124 6.2031 22 1 6.5555 11.3327 7.1863 23 6 3.9977 3.5829 1.1949 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8333 0.9766 -0.8908 30 1 3.8340 0.9764 0.8893 31 1 3.8576 3.0593 -2.1337 32 1 4.4935 5.4366 -2.1419 33 1 4.8019 6.6378 -0.0158 34 1 3.9983 5.3698 3.1761 35 1 5.8051 6.7322 4.5967 36 1 4.6284 7.9022 3.9529 37 1 7.6323 7.9197 3.4129 38 1 6.4550 9.0894 2.7693 39 1 9.2097 11.1916 4.0173 40 1 3.8584 3.0616 2.1304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360153442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:15 Heat of formation + Delta-G solvation = -72.631860 kcal Electronic energy + Delta-G solvation = -20188.945227 eV Core-core repulsion = 16968.177332 eV Total energy + Delta-G solvation = -3220.767895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.30133 -38.83138 -37.73255 -34.60500 -33.52397 -32.49508 -31.17640 -30.80185 -29.45491 -26.09868 -25.78404 -23.09832 -22.82015 -22.26029 -20.85333 -19.55782 -17.48316 -16.97903 -16.80886 -16.41889 -16.08728 -15.73957 -15.23825 -14.78775 -14.53112 -14.40738 -13.80231 -13.38005 -13.31002 -13.12070 -12.75884 -12.59074 -12.22650 -12.18944 -11.76537 -11.63807 -11.47802 -11.22055 -11.13268 -10.95459 -10.62660 -10.14329 -10.01317 -9.91173 -9.72315 -9.26522 -9.09809 -8.82583 -8.35456 -7.97505 -5.98870 -4.03618 1.28687 1.37008 3.02936 3.31941 3.33354 3.38687 3.41344 3.46257 3.99962 4.45260 4.63655 4.67840 4.77685 4.91234 5.00146 5.02649 5.10352 5.21171 5.30282 5.36201 5.36528 5.45972 5.55748 5.61801 5.75812 5.77464 5.97116 6.13310 6.14455 6.39018 6.42495 6.57536 6.63258 6.81678 6.90128 7.12935 7.67925 7.71005 7.80376 8.02682 8.33527 8.58534 9.04308 9.60191 11.12016 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039521 B = 0.002642 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.314839 B =10594.668489 C =11106.433228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.383 6.383 4 C 0.107 3.893 5 C -0.077 4.077 6 C -0.123 4.123 7 C -0.102 4.102 8 C -0.115 4.115 9 C 0.157 3.843 10 N -0.687 5.687 11 C 0.509 3.491 12 O -0.513 6.513 13 C -0.129 4.129 14 C 0.036 3.964 15 C -0.528 4.528 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.132 4.132 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.138 0.862 34 H 0.409 0.591 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.261 0.739 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.316 -20.571 -8.004 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.302 6.302 4 C 0.031 3.969 5 C -0.078 4.078 6 C -0.142 4.142 7 C -0.121 4.121 8 C -0.136 4.136 9 C 0.062 3.938 10 N -0.333 5.333 11 C 0.299 3.701 12 O -0.386 6.386 13 C -0.169 4.169 14 C -0.001 4.001 15 C -0.567 4.567 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.722 3.278 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.153 4.153 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.155 0.845 34 H 0.244 0.756 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.719 -20.042 -8.679 25.792 hybrid contribution 0.081 0.187 1.250 1.266 sum -13.638 -19.856 -7.429 25.208 Atomic orbital electron populations 1.21741 0.93721 1.02147 1.03268 1.22469 0.95668 0.83964 1.00019 1.87996 1.20645 1.26192 1.95402 1.21269 0.81603 0.93210 1.00790 1.19233 1.00987 0.94507 0.93081 1.20924 1.01286 0.94803 0.97147 1.21019 0.98893 0.94305 0.97859 1.21307 1.00047 1.01298 0.90926 1.17803 0.98523 0.90835 0.86601 1.43972 1.39933 1.37544 1.11854 1.21846 0.77977 0.78876 0.91425 1.90688 1.41233 1.66369 1.40289 1.21916 1.03978 0.98638 0.92366 1.18920 0.91906 0.91982 0.97300 1.21197 1.18209 1.17178 1.00072 0.92536 1.25030 0.95690 0.97283 0.96402 1.69993 1.20616 1.31701 1.30448 0.86573 0.78296 0.79533 0.83439 1.20657 1.21204 1.19870 1.20724 1.04218 0.92275 0.98096 0.91167 0.91791 0.91822 0.93450 0.93417 0.92429 0.92505 0.86206 0.85623 0.84457 0.75589 0.89883 0.89732 0.95726 0.95713 0.92900 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.06 0.41 6.66 37.16 0.25 0.66 16 3 O -0.38 -4.05 10.33 -35.23 -0.36 -4.41 16 4 C 0.11 1.03 6.06 36.01 0.22 1.25 16 5 C -0.08 -0.92 5.51 -104.65 -0.58 -1.50 16 6 C -0.12 -1.45 9.70 -39.55 -0.38 -1.83 16 7 C -0.10 -1.33 10.04 -39.61 -0.40 -1.73 16 8 C -0.12 -1.81 8.66 -39.39 -0.34 -2.15 16 9 C 0.16 2.35 6.28 -83.70 -0.53 1.83 16 10 N -0.69 -10.12 5.34 -9.86 -0.05 -10.18 16 11 C 0.51 9.67 7.57 -10.99 -0.08 9.59 16 12 O -0.51 -11.78 13.68 5.55 0.08 -11.70 16 13 C -0.13 -2.55 5.64 -27.88 -0.16 -2.70 16 14 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 15 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 16 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.25 13.29 55.43 0.74 -26.52 16 19 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.13 -1.68 9.62 -39.39 -0.38 -2.06 16 24 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 32 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.14 2.42 6.43 -52.49 -0.34 2.08 16 34 H 0.41 4.55 8.82 -40.82 -0.36 4.19 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 36 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 40 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 343.15 15.07 5.17 5.17 Total: -1.00 -34.08 343.15 -8.13 -42.21 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.15 Total: 0.86 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -2.53 Total: -11.97 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.68 Total: -36.69 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.29 Total: -16.11 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.08 -8.13 -42.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360153442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.422 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds