Wall clock time and date at job start Mon Mar 30 2020 01:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47248 * 2 1 4 4 C 1.42896 * 113.99957 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.47018 * 179.97438 * 4 3 2 6 6 C 1.38303 * 119.96525 * 269.97366 * 5 4 3 7 7 C 1.38262 * 120.14327 * 180.02562 * 6 5 4 8 8 C 1.38136 * 120.07025 * 359.67748 * 7 6 5 9 9 C 1.38856 * 119.92641 * 0.59942 * 8 7 6 10 10 N 1.39917 * 120.07116 * 179.69994 * 9 8 7 11 11 C 1.34779 * 120.00199 * 326.54865 * 10 9 8 12 12 O 1.21292 * 119.99752 * 354.72752 * 11 10 9 13 13 C 1.50697 * 120.00499 * 174.73002 * 11 10 9 14 14 C 1.53003 * 109.47280 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.46942 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99917 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99728 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00203 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47216 * 89.99386 * 19 17 15 21 21 H 1.48497 * 109.47285 * 210.00336 * 19 17 15 22 22 H 1.48509 * 109.46854 * 329.99869 * 19 17 15 23 23 C 1.38090 * 119.96719 * 89.99700 * 5 4 3 24 24 H 1.09000 * 109.47250 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46832 * 300.00063 * 1 2 3 26 26 H 1.08999 * 109.47266 * 60.00160 * 1 2 3 27 27 H 1.08998 * 109.46832 * 239.99937 * 2 1 3 28 28 H 1.08999 * 109.47266 * 119.99840 * 2 1 3 29 29 H 1.09000 * 109.47619 * 59.99806 * 4 3 2 30 30 H 1.09005 * 109.46904 * 299.99389 * 4 3 2 31 31 H 1.08003 * 119.92801 * 0.02647 * 6 5 4 32 32 H 1.07992 * 119.96523 * 179.97438 * 7 6 5 33 33 H 1.07988 * 120.04058 * 180.31809 * 8 7 6 34 34 H 0.97006 * 120.00500 * 146.55272 * 10 9 8 35 35 H 1.09001 * 109.47394 * 59.99674 * 13 11 10 36 36 H 1.09005 * 109.47037 * 299.99959 * 13 11 10 37 37 H 1.08999 * 109.46583 * 299.99484 * 14 13 11 38 38 H 1.08996 * 109.47091 * 59.99776 * 14 13 11 39 39 H 0.96998 * 120.00391 * 180.02562 * 18 17 15 40 40 H 1.08002 * 120.03489 * 359.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9161 -0.0012 6 6 3.9977 3.5831 -1.1996 7 6 4.3547 4.9188 -1.2044 8 6 4.5281 5.5932 -0.0114 9 6 4.3556 4.9250 1.1935 10 7 4.5366 5.6036 2.4037 11 6 5.4588 6.5820 2.4963 12 8 6.1970 6.8100 1.5613 13 6 5.5728 7.3928 3.7614 14 6 6.6878 8.4288 3.6045 15 6 6.8013 9.2400 4.8695 16 1 6.1443 9.0367 5.7022 17 6 7.7447 10.2410 4.9641 18 7 8.5458 10.4876 3.9506 19 14 7.8861 11.2461 6.5323 20 1 8.8491 10.5922 7.4543 21 1 8.3656 12.6124 6.2031 22 1 6.5555 11.3327 7.1863 23 6 3.9977 3.5829 1.1949 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8333 0.9766 -0.8908 30 1 3.8340 0.9764 0.8893 31 1 3.8576 3.0593 -2.1337 32 1 4.4935 5.4366 -2.1419 33 1 4.8019 6.6378 -0.0158 34 1 3.9983 5.3698 3.1761 35 1 5.8051 6.7322 4.5967 36 1 4.6284 7.9022 3.9529 37 1 7.6323 7.9197 3.4129 38 1 6.4550 9.0894 2.7693 39 1 9.2097 11.1916 4.0173 40 1 3.8584 3.0616 2.1304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360153442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:14 Heat of formation + Delta-G solvation = -94.795398 kcal Electronic energy + Delta-G solvation = -20189.906311 eV Core-core repulsion = 16968.177332 eV Total energy + Delta-G solvation = -3221.728979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.57298 -39.91774 -38.60081 -35.92750 -35.56471 -33.40065 -32.98616 -31.53988 -30.69169 -27.72937 -26.92399 -24.44242 -23.61927 -23.33633 -22.35895 -20.95237 -18.92765 -18.45118 -17.61115 -17.51302 -17.21273 -17.00863 -16.55172 -16.47219 -15.73011 -15.60337 -15.02013 -14.67231 -14.37648 -14.21882 -13.99886 -13.89110 -13.40253 -13.26641 -13.21766 -12.82835 -12.63760 -12.48372 -12.31599 -12.12135 -12.03564 -11.94145 -11.66343 -11.36872 -11.31087 -10.76749 -10.57343 -10.53339 -9.86365 -9.12247 -8.18910 -6.32945 0.23242 0.33171 1.42152 1.44786 1.55674 1.61055 2.07411 2.43277 2.59955 3.12059 3.14300 3.80595 3.86545 3.94164 4.14581 4.21950 4.31903 4.33917 4.39134 4.42161 4.50859 4.51831 4.55418 4.60217 4.72599 4.90263 4.97701 5.04653 5.07357 5.30314 5.33391 5.36104 5.48355 5.53461 5.58208 5.60639 5.83655 6.03195 6.15850 6.28889 6.45213 6.85178 7.18542 7.37342 8.93696 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039521 B = 0.002642 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.314839 B =10594.668489 C =11106.433228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.407 6.407 4 C 0.108 3.892 5 C -0.080 4.080 6 C -0.117 4.117 7 C -0.108 4.108 8 C -0.144 4.144 9 C 0.132 3.868 10 N -0.665 5.665 11 C 0.512 3.488 12 O -0.564 6.564 13 C -0.117 4.117 14 C 0.041 3.959 15 C -0.543 4.543 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.937 5.937 19 Si 0.975 3.025 20 H -0.272 1.272 21 H -0.287 1.287 22 H -0.255 1.255 23 C -0.127 4.127 24 H 0.090 0.910 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.148 0.852 32 H 0.141 0.859 33 H 0.106 0.894 34 H 0.428 0.572 35 H 0.111 0.889 36 H 0.110 0.890 37 H -0.016 1.016 38 H -0.016 1.016 39 H 0.263 0.737 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.070 -22.830 -6.709 28.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.327 6.327 4 C 0.032 3.968 5 C -0.081 4.081 6 C -0.136 4.136 7 C -0.126 4.126 8 C -0.164 4.164 9 C 0.038 3.962 10 N -0.312 5.312 11 C 0.302 3.698 12 O -0.441 6.441 13 C -0.156 4.156 14 C 0.004 3.996 15 C -0.581 4.581 16 H 0.096 0.904 17 C -0.206 4.206 18 N -0.577 5.577 19 Si 0.798 3.202 20 H -0.197 1.197 21 H -0.213 1.213 22 H -0.179 1.179 23 C -0.148 4.148 24 H 0.109 0.891 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.166 0.834 32 H 0.159 0.841 33 H 0.124 0.876 34 H 0.267 0.733 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.002 0.998 38 H 0.002 0.998 39 H 0.071 0.929 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.536 -22.354 -7.361 28.200 hybrid contribution 0.569 0.778 0.737 1.213 sum -14.967 -21.576 -6.624 27.082 Atomic orbital electron populations 1.21774 0.93312 1.03278 1.02504 1.22677 0.96059 0.82773 1.01197 1.87955 1.20953 1.28170 1.95647 1.21315 0.81566 0.91416 1.02461 1.19646 0.99757 0.95976 0.92698 1.21279 0.99621 0.94120 0.98557 1.21236 0.98628 0.95176 0.97577 1.21260 1.02064 1.00380 0.92742 1.17975 1.00278 0.91962 0.85999 1.43561 1.38717 1.36066 1.12808 1.21621 0.78243 0.79504 0.90436 1.90679 1.43579 1.68105 1.41728 1.21673 1.02449 0.97754 0.93750 1.18703 0.92532 0.92754 0.95641 1.21705 1.18335 1.17163 1.00847 0.90447 1.26148 0.95248 0.98840 1.00321 1.70175 1.21625 1.32656 1.33281 0.85309 0.79146 0.77209 0.78507 1.19696 1.21275 1.17883 1.20967 1.02981 0.91141 0.99668 0.89123 0.92613 0.92512 0.92138 0.92311 0.90587 0.91078 0.83414 0.84081 0.87620 0.73324 0.87099 0.87240 0.99801 0.99805 0.92863 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.28 71.98 0.74 -0.86 16 2 C 0.05 0.58 6.66 71.98 0.48 1.06 16 3 O -0.41 -7.48 10.33 -148.98 -1.54 -9.02 16 4 C 0.11 1.72 6.06 71.24 0.43 2.15 16 5 C -0.08 -1.72 5.51 -19.88 -0.11 -1.83 16 6 C -0.12 -2.54 9.70 22.29 0.22 -2.32 16 7 C -0.11 -2.80 10.04 22.25 0.22 -2.57 16 8 C -0.14 -4.70 8.66 22.39 0.19 -4.50 16 9 C 0.13 3.92 6.28 38.16 0.24 4.16 16 10 N -0.66 -19.29 5.34 -303.50 -1.62 -20.92 16 11 C 0.51 19.97 7.57 87.66 0.66 20.63 16 12 O -0.56 -27.61 13.68 -3.07 -0.04 -27.65 16 13 C -0.12 -4.60 5.64 29.85 0.17 -4.43 16 14 C 0.04 2.29 4.26 29.85 0.13 2.42 16 15 C -0.54 -30.70 9.11 25.60 0.23 -30.47 16 16 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 17 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 18 N -0.94 -59.53 13.29 21.45 0.28 -59.25 16 19 Si 0.97 44.25 29.54 68.60 2.03 46.27 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 23 C -0.13 -3.00 9.62 22.39 0.22 -2.78 16 24 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 30 H 0.07 0.93 8.09 -2.38 -0.02 0.91 16 31 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.11 4.08 6.43 -2.92 -0.02 4.06 16 34 H 0.43 8.74 8.82 -92.70 -0.82 7.92 16 35 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 36 H 0.11 3.77 8.14 -2.38 -0.02 3.75 16 37 H -0.02 -1.03 8.10 -2.39 -0.02 -1.05 16 38 H -0.02 -1.03 8.10 -2.39 -0.02 -1.05 16 39 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 40 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -78.01 343.15 3.60 -74.41 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.21 Total: 15.50 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 4.28 Total: -19.36 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -1.34 Total: -80.16 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -1.58 Total: -36.67 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -78.01 3.60 -74.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360153442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.383 kcal (2) G-P(sol) polarization free energy of solvation -78.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds