Wall clock time and date at job start Mon Mar 30 2020 01:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 119.99679 * 2 1 4 4 C 1.52997 * 109.47473 * 90.00212 * 3 2 1 5 5 C 1.50701 * 109.47212 * 179.97438 * 4 3 2 6 6 C 1.38159 * 120.03133 * 265.00010 * 5 4 3 7 7 C 1.38236 * 120.05848 * 179.97438 * 6 5 4 8 8 C 1.38294 * 120.11395 * 0.02562 * 7 6 5 9 9 C 1.38124 * 120.04986 * 0.02562 * 8 7 6 10 10 C 1.38717 * 120.02546 * 84.72533 * 5 4 3 11 11 O 1.35899 * 120.05527 * 359.97438 * 10 5 4 12 12 C 1.34774 * 120.00048 * 179.97438 * 2 1 3 13 13 O 1.21286 * 119.99764 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00258 * 0.02562 * 12 2 1 15 15 C 1.53002 * 109.47440 * 180.02562 * 14 12 2 16 16 C 1.50689 * 109.47440 * 179.97438 * 15 14 12 17 17 H 1.08008 * 119.99935 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00294 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99920 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99687 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.46821 * 90.00208 * 20 18 16 22 22 H 1.48504 * 109.47131 * 210.00148 * 20 18 16 23 23 H 1.48499 * 109.47418 * 330.00064 * 20 18 16 24 24 H 1.08996 * 109.47220 * 90.00398 * 1 2 3 25 25 H 1.09001 * 109.46688 * 210.00173 * 1 2 3 26 26 H 1.08998 * 109.47230 * 329.99640 * 1 2 3 27 27 H 1.09002 * 109.47129 * 329.99954 * 3 2 1 28 28 H 1.08998 * 109.46845 * 210.00761 * 3 2 1 29 29 H 1.09002 * 109.47153 * 59.99757 * 4 3 2 30 30 H 1.09001 * 109.46832 * 299.99948 * 4 3 2 31 31 H 1.08003 * 119.96941 * 359.97438 * 6 5 4 32 32 H 1.08004 * 119.94507 * 180.02562 * 7 6 5 33 33 H 1.07994 * 119.97278 * 180.02562 * 8 7 6 34 34 H 1.08002 * 120.02306 * 179.97438 * 9 8 7 35 35 H 0.96702 * 114.00001 * 90.00472 * 11 10 5 36 36 H 1.09002 * 109.46816 * 299.99717 * 14 12 2 37 37 H 1.08991 * 109.47311 * 59.99425 * 14 12 2 38 38 H 1.09000 * 109.46639 * 300.00125 * 15 14 12 39 39 H 1.08998 * 109.47182 * 59.99154 * 15 14 12 40 40 H 0.97000 * 119.99356 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4424 5 6 3.2065 3.0153 1.4424 6 6 4.5841 3.0179 1.5467 7 6 5.2764 4.2144 1.5462 8 6 4.5922 5.4117 1.4418 9 6 3.2149 5.4146 1.3383 10 6 2.5183 4.2147 1.3318 11 8 1.1637 4.2145 1.2229 12 6 2.1389 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0001 14 6 1.3855 -2.4723 0.0005 15 6 2.3797 -3.6352 0.0018 16 6 1.6264 -4.9403 0.0024 17 1 0.5463 -4.9403 0.0024 18 6 2.3158 -6.1343 0.0031 19 7 1.6582 -7.2733 0.0031 20 14 4.1837 -6.1342 0.0025 21 1 4.6791 -6.1332 1.4023 22 1 4.6786 -7.3472 -0.6969 23 1 4.6785 -4.9222 -0.6986 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.6083 2.0284 -0.5138 28 1 3.1498 1.1385 -0.5139 29 1 3.0416 0.9509 1.9563 30 1 1.5001 1.8408 1.9563 31 1 5.1207 2.0842 1.6288 32 1 6.3533 4.2143 1.6274 33 1 5.1353 6.3452 1.4412 34 1 2.6810 6.3499 1.2572 35 1 0.7009 4.2551 2.0710 36 1 0.7585 -2.5298 0.8903 37 1 0.7591 -2.5302 -0.8896 38 1 3.0071 -3.5778 -0.8877 39 1 3.0058 -3.5770 0.8922 40 1 2.1433 -8.1133 0.0032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360760363.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:44 Heat of formation + Delta-G solvation = -89.123291 kcal Electronic energy + Delta-G solvation = -20850.001735 eV Core-core repulsion = 17628.518718 eV Total energy + Delta-G solvation = -3221.483018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16111 -40.58403 -37.52517 -36.96561 -35.59189 -34.26444 -33.17811 -30.96617 -29.84230 -28.10866 -27.28201 -24.94237 -23.53385 -22.82912 -21.94875 -20.05895 -19.25522 -19.08335 -17.76950 -17.32622 -16.94087 -16.76705 -16.60209 -16.23199 -15.98311 -15.05955 -14.84811 -14.75217 -14.59633 -14.32659 -13.96985 -13.77572 -13.59787 -13.44488 -13.07456 -12.98820 -12.92214 -12.82015 -12.50530 -12.09181 -11.98029 -11.86328 -11.76351 -11.40069 -11.34197 -10.78796 -10.71068 -9.97050 -9.68385 -9.40453 -8.32355 -6.35031 0.28789 0.35552 1.31981 1.33952 1.49389 1.65206 2.06367 2.34282 2.70267 3.03233 3.33116 3.69184 3.83422 3.90343 4.12022 4.18989 4.25947 4.34564 4.35425 4.44195 4.46821 4.50744 4.59698 4.73471 4.81102 4.89321 4.94102 5.03397 5.05006 5.14676 5.32105 5.41867 5.42964 5.52872 5.58965 5.59943 5.61659 5.92772 6.22591 6.38020 6.70985 6.87344 7.21758 7.30364 8.83310 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029414 B = 0.003391 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.683003 B = 8254.401805 C = 9057.279479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.616 5.616 3 C 0.128 3.872 4 C -0.078 4.078 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.133 4.133 8 C -0.107 4.107 9 C -0.151 4.151 10 C 0.105 3.895 11 O -0.502 6.502 12 C 0.509 3.491 13 O -0.586 6.586 14 C -0.113 4.113 15 C 0.006 3.994 16 C -0.528 4.528 17 H 0.052 0.948 18 C 0.014 3.986 19 N -0.943 5.943 20 Si 0.937 3.063 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.264 1.264 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.141 0.859 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.407 0.593 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.007 0.993 39 H 0.007 0.993 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.309 29.571 4.474 29.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.349 5.349 3 C 0.006 3.994 4 C -0.117 4.117 5 C -0.121 4.121 6 C -0.136 4.136 7 C -0.151 4.151 8 C -0.125 4.125 9 C -0.169 4.169 10 C 0.061 3.939 11 O -0.314 6.314 12 C 0.299 3.701 13 O -0.466 6.466 14 C -0.153 4.153 15 C -0.032 4.032 16 C -0.566 4.566 17 H 0.070 0.930 18 C -0.183 4.183 19 N -0.583 5.583 20 Si 0.762 3.238 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.188 1.188 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.134 0.866 32 H 0.159 0.841 33 H 0.169 0.831 34 H 0.164 0.836 35 H 0.266 0.734 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.412 29.361 3.867 29.617 hybrid contribution 0.691 -0.729 0.466 1.108 sum 1.103 28.631 4.334 28.978 Atomic orbital electron populations 1.22086 0.76851 1.04814 1.03273 1.48032 1.08633 1.04988 1.73224 1.21349 0.97031 0.84540 0.96503 1.20675 1.00493 0.93207 0.97299 1.20172 0.94418 0.94756 1.02741 1.21189 0.93525 0.99085 0.99778 1.21437 1.01170 0.92103 1.00429 1.21382 0.93857 0.98956 0.98334 1.21689 0.95223 0.98019 1.01975 1.18368 0.83805 0.91564 1.00186 1.84778 1.14266 1.96230 1.36167 1.21314 0.87695 0.86649 0.74470 1.90618 1.16236 1.88143 1.51593 1.21508 0.99143 0.89897 1.04707 1.19218 0.94997 0.92799 0.96194 1.21417 0.94367 0.90528 1.50299 0.93022 1.25786 1.03018 0.95254 0.94273 1.70021 1.37676 0.98132 1.52501 0.85847 0.80906 0.77898 0.79176 1.19287 1.20221 1.18826 0.91379 0.90164 0.88467 0.88577 0.92813 0.93087 0.89147 0.86573 0.84138 0.83061 0.83556 0.73441 0.87916 0.88230 0.97442 0.97428 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 10.24 127.77 1.31 2.65 16 2 N -0.62 -17.08 2.87 -846.76 -2.43 -19.51 16 3 C 0.13 3.28 5.39 86.38 0.47 3.75 16 4 C -0.08 -1.79 5.39 29.85 0.16 -1.63 16 5 C -0.12 -2.53 5.15 -19.77 -0.10 -2.63 16 6 C -0.12 -2.53 9.68 22.25 0.22 -2.32 16 7 C -0.13 -2.26 10.04 22.28 0.22 -2.04 16 8 C -0.11 -1.51 10.04 22.26 0.22 -1.29 16 9 C -0.15 -2.24 9.99 22.36 0.22 -2.02 16 10 C 0.11 1.86 6.68 22.51 0.15 2.01 16 11 O -0.50 -7.11 12.65 -92.42 -1.17 -8.28 16 12 C 0.51 19.16 7.67 87.66 0.67 19.83 16 13 O -0.59 -27.01 15.56 -3.05 -0.05 -27.06 16 14 C -0.11 -4.43 4.19 29.85 0.13 -4.31 16 15 C 0.01 0.30 3.33 29.85 0.10 0.40 16 16 C -0.53 -30.87 9.66 25.60 0.25 -30.62 16 17 H 0.05 3.16 7.99 -2.91 -0.02 3.13 16 18 C 0.01 0.87 5.47 84.65 0.46 1.33 16 19 N -0.94 -59.43 13.96 21.45 0.30 -59.13 16 20 Si 0.94 47.44 27.47 68.60 1.88 49.32 16 21 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 23 H -0.26 -13.39 6.54 99.48 0.65 -12.74 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.08 1.50 6.44 -2.39 -0.02 1.49 16 26 H 0.10 1.28 8.07 -2.39 -0.02 1.26 16 27 H 0.10 2.09 8.07 -2.39 -0.02 2.07 16 28 H 0.05 1.68 7.42 -2.39 -0.02 1.66 16 29 H 0.05 1.43 8.05 -2.39 -0.02 1.41 16 30 H 0.09 1.68 7.70 -2.39 -0.02 1.67 16 31 H 0.12 2.69 8.06 -2.91 -0.02 2.66 16 32 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 34 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.41 2.15 9.06 -74.06 -0.67 1.48 16 36 H 0.10 3.64 7.40 -2.39 -0.02 3.62 16 37 H 0.10 3.59 8.11 -2.39 -0.02 3.57 16 38 H 0.01 0.39 7.15 -2.39 -0.02 0.37 16 39 H 0.01 0.39 7.53 -2.39 -0.02 0.37 16 40 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -77.26 337.86 3.32 -73.94 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 0.31 Total: 7.60 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 4.48 Total: -16.88 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -2.13 Total: -78.64 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -1.22 Total: -35.34 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.88 Total: 49.32 kcal Total: -77.26 3.32 -73.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360760363.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.179 kcal (2) G-P(sol) polarization free energy of solvation -77.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds