Wall clock time and date at job start Mon Mar 30 2020 01:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47066 * 2 1 4 4 C 1.42897 * 114.00017 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47059 * 59.99923 * 4 3 2 6 6 C 1.52992 * 109.47040 * 299.99678 * 4 3 2 7 7 C 1.50705 * 109.46907 * 179.97438 * 4 3 2 8 8 O 1.21278 * 120.00072 * 0.02562 * 7 4 3 9 9 N 1.34770 * 119.99743 * 180.02562 * 7 4 3 10 10 C 1.39239 * 119.99959 * 184.29333 * 9 7 4 11 11 C 1.39478 * 119.83238 * 324.70825 * 10 9 7 12 12 C 1.36370 * 120.16952 * 180.30006 * 11 10 9 13 13 C 1.40874 * 119.82617 * 359.47617 * 12 11 10 14 14 C 1.41158 * 120.15960 * 180.25165 * 13 12 11 15 15 H 1.08009 * 119.99522 * 215.01433 * 14 13 12 16 16 C 1.39900 * 120.00488 * 35.02062 * 14 13 12 17 17 N 1.30870 * 119.99788 * 355.54235 * 16 14 13 18 18 Si 1.86801 * 120.00301 * 175.54079 * 16 14 13 19 19 H 1.48501 * 109.47101 * 89.99930 * 18 16 14 20 20 H 1.48502 * 109.47060 * 210.00161 * 18 16 14 21 21 H 1.48503 * 109.46930 * 329.99985 * 18 16 14 22 22 C 1.40864 * 119.67253 * 0.52485 * 13 12 11 23 23 C 1.36374 * 119.82668 * 359.72773 * 22 13 12 24 24 H 1.09001 * 109.47045 * 60.00474 * 1 2 3 25 25 H 1.09003 * 109.47036 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47458 * 300.00312 * 1 2 3 27 27 H 1.08996 * 109.47214 * 240.00060 * 2 1 3 28 28 H 1.09001 * 109.47045 * 119.99526 * 2 1 3 29 29 H 1.09001 * 109.47027 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47064 * 299.99764 * 5 4 3 31 31 H 1.08995 * 109.47325 * 59.99867 * 5 4 3 32 32 H 1.09007 * 109.47267 * 300.00245 * 6 4 3 33 33 H 1.08998 * 109.47184 * 60.00174 * 6 4 3 34 34 H 1.09000 * 109.47457 * 180.02562 * 6 4 3 35 35 H 0.96999 * 120.00349 * 4.28675 * 9 7 4 36 36 H 1.07999 * 119.91803 * 0.02562 * 11 10 9 37 37 H 1.08002 * 120.08608 * 179.70227 * 12 11 10 38 38 H 0.97002 * 120.00233 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.08494 * 179.70872 * 22 13 12 40 40 H 1.08008 * 119.91390 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.9967 0.7813 -1.2483 6 6 3.9956 0.7817 1.2501 7 6 3.8193 2.9163 -0.0001 8 8 2.9609 3.7730 -0.0005 9 7 5.1208 3.2664 -0.0002 10 6 5.4807 4.6085 0.0894 11 6 4.6926 5.5808 -0.5262 12 6 5.0420 6.8967 -0.4480 13 6 6.1962 7.2739 0.2663 14 6 6.5614 8.6344 0.3562 15 1 7.6047 8.9140 0.3643 16 6 5.5723 9.6206 0.4351 17 7 4.3097 9.2902 0.3377 18 14 6.0536 11.4089 0.6794 19 1 6.2430 12.0558 -0.6438 20 1 4.9799 12.1130 1.4255 21 1 7.3206 11.4795 1.4509 22 6 6.9870 6.2861 0.8853 23 6 6.6277 4.9738 0.7939 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.0833 0.8677 -1.2481 30 1 3.7157 -0.2719 -1.2482 31 1 3.5943 1.2646 -2.1385 32 1 3.5924 1.2654 2.1399 33 1 3.7146 -0.2714 1.2502 34 1 5.0822 0.8682 1.2509 35 1 5.8068 2.5835 -0.0627 36 1 3.8058 5.2905 -1.0700 37 1 4.4334 7.6480 -0.9292 38 1 3.6238 9.9739 0.3927 39 1 7.8759 6.5675 1.4305 40 1 7.2328 4.2153 1.2683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383956739.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:31 Heat of formation + Delta-G solvation = -63.473239 kcal Electronic energy + Delta-G solvation = -21379.423050 eV Core-core repulsion = 18159.052302 eV Total energy + Delta-G solvation = -3220.370748 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.22853 -38.35336 -36.95382 -34.46887 -33.48874 -32.49814 -30.67496 -29.48754 -28.80619 -27.64262 -25.30206 -23.96821 -22.12294 -21.25410 -20.68439 -19.22386 -17.58743 -17.25270 -16.46142 -15.80819 -15.79415 -15.18876 -14.76358 -14.49912 -13.91553 -13.69421 -13.43707 -12.89770 -12.74661 -12.65525 -12.47643 -12.42260 -12.16572 -12.00599 -11.96976 -11.70272 -11.43597 -11.27451 -11.13696 -11.01751 -10.87514 -10.47597 -9.88809 -9.84142 -9.63203 -9.34451 -8.93578 -8.68011 -7.50147 -6.86812 -6.56584 -4.30807 2.59063 3.02058 3.10638 3.12186 3.12756 3.16898 3.40193 4.00314 4.02971 4.58258 4.73235 4.80716 4.88988 4.96198 5.09356 5.20076 5.26037 5.28314 5.48726 5.57203 5.66822 5.71114 5.77680 5.85754 6.01704 6.03155 6.14502 6.40809 6.80730 6.97824 7.06293 7.12861 7.24447 7.31953 7.66136 7.70830 7.99619 8.11815 8.22121 8.36034 8.69634 8.79007 8.95979 9.03948 10.34392 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033767 B = 0.003693 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.023724 B = 7579.656736 C = 8123.882124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.351 6.351 4 C 0.100 3.900 5 C -0.177 4.177 6 C -0.175 4.175 7 C 0.511 3.489 8 O -0.504 6.504 9 N -0.649 5.649 10 C 0.006 3.994 11 C -0.094 4.094 12 C -0.143 4.143 13 C 0.100 3.900 14 C -0.463 4.463 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.807 5.807 18 Si 0.915 3.085 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.204 4.204 23 C -0.113 4.113 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.393 0.607 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.278 0.722 39 H 0.097 0.903 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.134 -17.036 -1.011 17.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.270 6.270 4 C 0.056 3.944 5 C -0.234 4.234 6 C -0.233 4.233 7 C 0.296 3.704 8 O -0.377 6.377 9 N -0.294 5.294 10 C -0.086 4.086 11 C -0.114 4.114 12 C -0.163 4.163 13 C 0.098 3.902 14 C -0.494 4.494 15 H 0.093 0.907 16 C -0.147 4.147 17 N -0.434 5.434 18 Si 0.740 3.260 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.224 4.224 23 C -0.133 4.133 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.227 0.773 36 H 0.125 0.875 37 H 0.148 0.852 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.156 -16.153 -0.991 16.326 hybrid contribution 0.623 0.148 0.267 0.694 sum -1.532 -16.005 -0.724 16.094 Atomic orbital electron populations 1.21723 0.93640 1.01903 1.03486 1.22560 0.95627 0.84458 1.00077 1.88131 1.18243 1.25694 1.94937 1.21322 0.83199 0.93894 0.95949 1.22420 1.01962 1.01207 0.97853 1.22399 1.02008 1.01066 0.97837 1.19890 0.83185 0.89257 0.78073 1.90733 1.49251 1.50869 1.46886 1.42866 1.06180 1.07598 1.72772 1.17264 1.00412 0.81602 1.09330 1.20658 0.98450 0.93143 0.99110 1.21307 0.99913 0.93923 1.01203 1.17727 0.91275 0.92845 0.88361 1.19475 0.94031 0.90801 1.45109 0.90655 1.25895 0.94590 1.01234 0.92944 1.69790 1.00613 1.35378 1.37585 0.86207 0.79181 0.81534 0.79081 1.19539 1.20305 1.18785 1.20683 1.03219 0.92303 1.06197 1.20059 0.97088 0.96083 1.00066 0.91739 0.91256 0.91734 0.93154 0.93150 0.90860 0.91217 0.90971 0.90982 0.91262 0.90843 0.77323 0.87477 0.85195 0.91056 0.88518 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 37.16 0.38 -1.04 16 2 C 0.05 0.52 5.86 37.16 0.22 0.74 16 3 O -0.35 -5.40 9.52 -55.14 -0.52 -5.93 16 4 C 0.10 1.38 0.98 -91.77 -0.09 1.29 16 5 C -0.18 -1.86 8.14 37.16 0.30 -1.56 16 6 C -0.18 -1.91 8.15 37.15 0.30 -1.60 16 7 C 0.51 9.63 6.39 -10.99 -0.07 9.56 16 8 O -0.50 -12.17 13.92 -14.35 -0.20 -12.37 16 9 N -0.65 -11.57 5.08 -9.74 -0.05 -11.62 16 10 C 0.01 0.13 6.31 -83.57 -0.53 -0.40 16 11 C -0.09 -2.39 8.61 -39.79 -0.34 -2.73 16 12 C -0.14 -3.92 8.61 -39.26 -0.34 -4.26 16 13 C 0.10 2.72 5.55 -106.80 -0.59 2.13 16 14 C -0.46 -12.49 9.02 -37.85 -0.34 -12.83 16 15 H 0.08 1.93 7.85 -52.48 -0.41 1.52 16 16 C 0.07 1.79 5.42 -17.34 -0.09 1.69 16 17 N -0.81 -21.87 10.61 55.55 0.59 -21.29 16 18 Si 0.92 19.33 29.56 -169.99 -5.03 14.31 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 21 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 22 C -0.20 -4.96 9.74 -39.26 -0.38 -5.34 16 23 C -0.11 -2.47 9.90 -39.79 -0.39 -2.86 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.45 6.42 -51.93 -0.33 0.12 16 28 H 0.05 0.46 6.42 -51.93 -0.33 0.12 16 29 H 0.07 0.65 7.47 -51.93 -0.39 0.26 16 30 H 0.07 0.57 6.54 -51.93 -0.34 0.23 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.58 6.54 -51.93 -0.34 0.24 16 34 H 0.07 0.68 7.67 -51.93 -0.40 0.28 16 35 H 0.39 5.33 7.67 -40.82 -0.31 5.02 16 36 H 0.11 2.78 6.22 -52.49 -0.33 2.46 16 37 H 0.13 3.72 6.15 -52.49 -0.32 3.39 16 38 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 39 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 40 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 327.05 15.07 4.93 4.93 Total: -1.00 -32.37 327.05 -7.85 -40.22 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -5.60 Total: 8.96 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -1.97 Total: -17.21 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.54 Total: -32.90 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.72 Total: -18.30 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.37 -7.85 -40.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383956739.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.258 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds