Wall clock time and date at job start Mon Mar 30 2020 01:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47066 * 2 1 4 4 C 1.42897 * 114.00017 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47059 * 59.99923 * 4 3 2 6 6 C 1.52992 * 109.47040 * 299.99678 * 4 3 2 7 7 C 1.50705 * 109.46907 * 179.97438 * 4 3 2 8 8 O 1.21278 * 120.00072 * 0.02562 * 7 4 3 9 9 N 1.34770 * 119.99743 * 180.02562 * 7 4 3 10 10 C 1.39239 * 119.99959 * 184.29333 * 9 7 4 11 11 C 1.39478 * 119.83238 * 324.70825 * 10 9 7 12 12 C 1.36370 * 120.16952 * 180.30006 * 11 10 9 13 13 C 1.40874 * 119.82617 * 359.47617 * 12 11 10 14 14 C 1.41158 * 120.15960 * 180.25165 * 13 12 11 15 15 H 1.08009 * 119.99522 * 215.01433 * 14 13 12 16 16 C 1.39900 * 120.00488 * 35.02062 * 14 13 12 17 17 N 1.30870 * 119.99788 * 355.54235 * 16 14 13 18 18 Si 1.86801 * 120.00301 * 175.54079 * 16 14 13 19 19 H 1.48501 * 109.47101 * 89.99930 * 18 16 14 20 20 H 1.48502 * 109.47060 * 210.00161 * 18 16 14 21 21 H 1.48503 * 109.46930 * 329.99985 * 18 16 14 22 22 C 1.40864 * 119.67253 * 0.52485 * 13 12 11 23 23 C 1.36374 * 119.82668 * 359.72773 * 22 13 12 24 24 H 1.09001 * 109.47045 * 60.00474 * 1 2 3 25 25 H 1.09003 * 109.47036 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47458 * 300.00312 * 1 2 3 27 27 H 1.08996 * 109.47214 * 240.00060 * 2 1 3 28 28 H 1.09001 * 109.47045 * 119.99526 * 2 1 3 29 29 H 1.09001 * 109.47027 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47064 * 299.99764 * 5 4 3 31 31 H 1.08995 * 109.47325 * 59.99867 * 5 4 3 32 32 H 1.09007 * 109.47267 * 300.00245 * 6 4 3 33 33 H 1.08998 * 109.47184 * 60.00174 * 6 4 3 34 34 H 1.09000 * 109.47457 * 180.02562 * 6 4 3 35 35 H 0.96999 * 120.00349 * 4.28675 * 9 7 4 36 36 H 1.07999 * 119.91803 * 0.02562 * 11 10 9 37 37 H 1.08002 * 120.08608 * 179.70227 * 12 11 10 38 38 H 0.97002 * 120.00233 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.08494 * 179.70872 * 22 13 12 40 40 H 1.08008 * 119.91390 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.9967 0.7813 -1.2483 6 6 3.9956 0.7817 1.2501 7 6 3.8193 2.9163 -0.0001 8 8 2.9609 3.7730 -0.0005 9 7 5.1208 3.2664 -0.0002 10 6 5.4807 4.6085 0.0894 11 6 4.6926 5.5808 -0.5262 12 6 5.0420 6.8967 -0.4480 13 6 6.1962 7.2739 0.2663 14 6 6.5614 8.6344 0.3562 15 1 7.6047 8.9140 0.3643 16 6 5.5723 9.6206 0.4351 17 7 4.3097 9.2902 0.3377 18 14 6.0536 11.4089 0.6794 19 1 6.2430 12.0558 -0.6438 20 1 4.9799 12.1130 1.4255 21 1 7.3206 11.4795 1.4509 22 6 6.9870 6.2861 0.8853 23 6 6.6277 4.9738 0.7939 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.0833 0.8677 -1.2481 30 1 3.7157 -0.2719 -1.2482 31 1 3.5943 1.2646 -2.1385 32 1 3.5924 1.2654 2.1399 33 1 3.7146 -0.2714 1.2502 34 1 5.0822 0.8682 1.2509 35 1 5.8068 2.5835 -0.0627 36 1 3.8058 5.2905 -1.0700 37 1 4.4334 7.6480 -0.9292 38 1 3.6238 9.9739 0.3927 39 1 7.8759 6.5675 1.4305 40 1 7.2328 4.2153 1.2683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383956739.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:31 Heat of formation + Delta-G solvation = -83.885402 kcal Electronic energy + Delta-G solvation = -21380.308188 eV Core-core repulsion = 18159.052302 eV Total energy + Delta-G solvation = -3221.255886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.63805 -39.75870 -38.61671 -36.22764 -35.00653 -33.84655 -31.60331 -31.42732 -30.63064 -28.45338 -27.05366 -25.18376 -23.47440 -23.04584 -22.22018 -20.67545 -19.25169 -18.97677 -17.73554 -17.28784 -16.98093 -16.69527 -16.09234 -15.90384 -15.71683 -14.96571 -14.64051 -14.53929 -14.22423 -14.00670 -13.61920 -13.46103 -13.44788 -13.27729 -13.26057 -12.91795 -12.85994 -12.82469 -12.67275 -12.30848 -12.09884 -11.97724 -11.75683 -11.67197 -11.15122 -10.70385 -10.53731 -10.39935 -9.46427 -8.76679 -8.49873 -6.33635 0.78573 1.12328 1.38554 1.43392 1.53705 1.71781 1.95074 2.23625 2.80850 2.95337 3.58023 3.68324 3.74535 3.89568 4.17914 4.32191 4.42538 4.43280 4.46404 4.52525 4.57699 4.71793 4.76515 4.90782 4.97216 5.00864 5.08633 5.11480 5.15922 5.21968 5.26720 5.33274 5.40806 5.70305 5.84456 6.06599 6.13599 6.21324 6.35328 6.69341 6.70569 6.95442 7.01488 7.36363 8.43103 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033767 B = 0.003693 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.023724 B = 7579.656736 C = 8123.882124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.042 3.958 3 O -0.395 6.395 4 C 0.105 3.895 5 C -0.173 4.173 6 C -0.172 4.172 7 C 0.503 3.497 8 O -0.568 6.568 9 N -0.635 5.635 10 C 0.019 3.981 11 C -0.111 4.111 12 C -0.169 4.169 13 C 0.067 3.933 14 C -0.496 4.496 15 H 0.082 0.918 16 C 0.021 3.979 17 N -0.848 5.848 18 Si 0.992 3.008 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.254 1.254 22 C -0.208 4.208 23 C -0.103 4.103 24 H 0.050 0.950 25 H 0.100 0.900 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.419 0.581 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.282 0.718 39 H 0.116 0.884 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.761 -19.866 -0.195 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.034 4.034 3 O -0.315 6.315 4 C 0.062 3.938 5 C -0.230 4.230 6 C -0.229 4.229 7 C 0.291 3.709 8 O -0.445 6.445 9 N -0.282 5.282 10 C -0.075 4.075 11 C -0.131 4.131 12 C -0.189 4.189 13 C 0.064 3.936 14 C -0.526 4.526 15 H 0.100 0.900 16 C -0.191 4.191 17 N -0.476 5.476 18 Si 0.813 3.187 19 H -0.187 1.187 20 H -0.199 1.199 21 H -0.177 1.177 22 C -0.228 4.228 23 C -0.123 4.123 24 H 0.069 0.931 25 H 0.119 0.881 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.258 0.742 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.134 0.866 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.221 -19.054 -0.183 19.056 hybrid contribution -0.031 0.834 -0.006 0.835 sum -0.253 -18.220 -0.189 18.222 Atomic orbital electron populations 1.21786 0.93473 1.03512 1.02111 1.22865 0.95907 0.82594 1.01986 1.88088 1.19193 1.28864 1.95379 1.21351 0.83270 0.90034 0.99152 1.22446 1.03074 1.02444 0.95048 1.22429 1.03119 1.02332 0.95015 1.21060 0.82485 0.91489 0.75854 1.90711 1.50983 1.53338 1.49514 1.42729 1.07040 1.06296 1.72084 1.17346 0.99573 0.83252 1.07285 1.20650 0.98734 0.93536 1.00177 1.21156 1.00791 0.94188 1.02773 1.18068 0.91942 0.94123 0.89428 1.19784 0.94655 0.91507 1.46692 0.90015 1.26886 0.94195 1.05962 0.92007 1.69925 1.01862 1.36959 1.38884 0.85055 0.79046 0.75329 0.79310 1.18673 1.19870 1.17729 1.20980 1.03284 0.92888 1.05644 1.20449 0.96707 0.96359 0.98810 0.93104 0.88094 0.93174 0.91041 0.91119 0.88647 0.87916 0.92860 0.93052 0.87940 0.88624 0.74240 0.89137 0.87962 0.90799 0.86614 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 10.28 71.98 0.74 -1.93 16 2 C 0.04 0.78 5.86 71.98 0.42 1.20 16 3 O -0.40 -11.82 9.52 -129.94 -1.24 -13.05 16 4 C 0.10 2.67 0.98 -11.54 -0.01 2.66 16 5 C -0.17 -3.04 8.14 71.98 0.59 -2.45 16 6 C -0.17 -3.08 8.15 71.98 0.59 -2.50 16 7 C 0.50 18.78 6.39 87.66 0.56 19.34 16 8 O -0.57 -28.62 13.92 16.01 0.22 -28.40 16 9 N -0.63 -21.47 5.08 -303.12 -1.54 -23.01 16 10 C 0.02 0.83 6.31 38.56 0.24 1.08 16 11 C -0.11 -5.92 8.61 22.13 0.19 -5.73 16 12 C -0.17 -9.79 8.61 22.48 0.19 -9.59 16 13 C 0.07 3.73 5.55 -21.27 -0.12 3.61 16 14 C -0.50 -27.51 9.02 23.39 0.21 -27.30 16 15 H 0.08 4.25 7.85 -2.91 -0.02 4.23 16 16 C 0.02 1.10 5.42 85.24 0.46 1.57 16 17 N -0.85 -48.47 10.61 21.82 0.23 -48.24 16 18 Si 0.99 40.40 29.56 68.60 2.03 42.42 16 19 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 20 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 22 C -0.21 -9.96 9.74 22.48 0.22 -9.74 16 23 C -0.10 -4.29 9.90 22.13 0.22 -4.07 16 24 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.01 6.42 -2.39 -0.02 0.99 16 28 H 0.07 1.01 6.42 -2.39 -0.02 0.99 16 29 H 0.09 1.24 7.47 -2.39 -0.02 1.22 16 30 H 0.10 1.16 6.54 -2.39 -0.02 1.14 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.10 1.18 6.54 -2.39 -0.02 1.17 16 34 H 0.09 1.28 7.67 -2.39 -0.02 1.26 16 35 H 0.42 9.74 7.67 -92.71 -0.71 9.03 16 36 H 0.09 5.06 6.22 -2.91 -0.02 5.04 16 37 H 0.10 6.37 6.15 -2.91 -0.02 6.36 16 38 H 0.28 14.79 8.30 -92.71 -0.77 14.02 16 39 H 0.12 5.01 8.06 -2.91 -0.02 4.98 16 40 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -77.29 327.05 4.55 -72.75 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: 0.34 Total: 31.39 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 4.50 Total: -33.86 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -1.31 Total: -71.25 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -1.01 Total: -41.45 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.42 kcal Total: -77.29 4.55 -72.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383956739.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.139 kcal (2) G-P(sol) polarization free energy of solvation -77.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds