Wall clock time and date at job start Mon Mar 30 2020 02:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99825 * 2 1 4 4 H 1.09001 * 110.64213 * 26.85168 * 3 2 1 5 5 C 1.54933 * 110.72335 * 263.50374 * 3 2 1 6 6 N 1.48528 * 103.22694 * 204.23089 * 5 3 2 7 7 C 1.46900 * 111.00491 * 159.72059 * 6 5 3 8 8 C 1.50694 * 109.47084 * 312.47790 * 7 6 5 9 9 C 1.38638 * 119.74910 * 269.72545 * 8 7 6 10 10 C 1.37622 * 120.24790 * 179.76441 * 9 8 7 11 11 C 1.40718 * 119.74314 * 0.48298 * 10 9 8 12 12 C 1.41398 * 120.24135 * 179.79125 * 11 10 9 13 13 H 1.07999 * 119.99561 * 204.37253 * 12 11 10 14 14 C 1.39945 * 120.00109 * 24.38048 * 12 11 10 15 15 N 1.30824 * 120.00075 * 17.86137 * 14 12 11 16 16 Si 1.86802 * 119.99942 * 197.86987 * 14 12 11 17 17 H 1.48492 * 109.47249 * 59.99425 * 16 14 12 18 18 H 1.48497 * 109.47004 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46663 * 299.99156 * 16 14 12 20 20 C 1.40710 * 119.51386 * 359.76784 * 11 10 9 21 21 C 1.37618 * 119.74526 * 0.02562 * 20 11 10 22 22 C 1.47904 * 105.82101 * 39.20448 * 6 5 3 23 23 C 1.53992 * 107.05702 * 334.67118 * 22 6 5 24 24 H 1.09007 * 110.30270 * 120.14214 * 23 22 6 25 25 O 1.42897 * 110.30825 * 242.30696 * 23 22 6 26 26 H 1.08995 * 109.47409 * 59.99884 * 1 2 3 27 27 H 1.08997 * 109.46974 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46975 * 299.99842 * 1 2 3 29 29 H 1.09002 * 110.67093 * 85.79508 * 5 3 2 30 30 H 1.09002 * 110.67021 * 322.65888 * 5 3 2 31 31 H 1.08997 * 109.47378 * 192.47290 * 7 6 5 32 32 H 1.09000 * 109.47043 * 72.47213 * 7 6 5 33 33 H 1.07996 * 119.87396 * 359.97438 * 9 8 7 34 34 H 1.07998 * 120.12722 * 180.27867 * 10 9 8 35 35 H 0.97006 * 120.00246 * 180.02562 * 15 14 12 36 36 H 1.08000 * 120.13114 * 180.02562 * 20 11 10 37 37 H 1.08004 * 119.87929 * 180.02562 * 21 20 11 38 38 H 1.09002 * 109.91545 * 94.02645 * 22 6 5 39 39 H 1.09004 * 109.91673 * 215.32114 * 22 6 5 40 40 H 0.96704 * 114.00016 * 298.54530 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3351 2.0267 0.4607 5 6 2.3829 1.7397 -1.4398 6 7 3.4567 2.7432 -1.2249 7 6 4.2630 2.9200 -2.4400 8 6 4.6448 1.5701 -2.9903 9 6 5.8241 0.9680 -2.5791 10 6 6.1804 -0.2668 -3.0714 11 6 5.3476 -0.9137 -4.0031 12 6 5.7056 -2.1806 -4.5190 13 1 5.3231 -2.5013 -5.4767 14 6 6.5556 -3.0188 -3.7886 15 7 6.7403 -2.8099 -2.5105 16 14 7.4264 -4.4359 -4.6388 17 1 8.2906 -3.9063 -5.7241 18 1 8.2626 -5.1662 -3.6526 19 1 6.4186 -5.3616 -5.2157 20 6 4.1557 -0.2909 -4.4172 21 6 3.8173 0.9422 -3.9085 22 6 4.2806 2.2204 -0.1134 23 6 3.3766 1.2960 0.7229 24 1 3.7859 0.2859 0.7452 25 8 3.2389 1.8058 2.0507 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.5266 2.1934 -1.9387 30 1 2.7582 0.8915 -2.0124 31 1 5.1650 3.4825 -2.1989 32 1 3.6831 3.4651 -3.1848 33 1 6.4638 1.4685 -1.8673 34 1 7.0972 -0.7360 -2.7463 35 1 7.3297 -3.3907 -2.0043 36 1 3.5090 -0.7786 -5.1315 37 1 2.9028 1.4221 -4.2245 38 1 5.1240 1.6553 -0.5103 39 1 4.6396 3.0451 0.5025 40 1 4.0721 1.8640 2.5381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399002466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:06 Heat of formation + Delta-G solvation = -65.579586 kcal Electronic energy + Delta-G solvation = -22097.537196 eV Core-core repulsion = 18877.075111 eV Total energy + Delta-G solvation = -3220.462086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.67362 -37.75951 -36.63824 -35.65720 -33.65374 -31.15641 -29.57375 -29.08307 -27.78824 -26.66169 -25.62218 -23.64595 -21.32581 -21.07253 -20.39867 -19.68512 -17.41182 -17.36960 -16.38935 -15.80565 -15.39766 -14.99601 -14.68822 -14.45639 -13.97522 -13.85861 -13.45435 -13.30136 -13.26616 -12.67220 -12.29393 -11.94104 -11.86779 -11.75478 -11.41701 -11.31549 -11.22000 -11.03787 -10.80127 -10.67355 -10.45550 -10.27348 -9.92346 -9.79496 -9.45440 -9.39254 -9.16812 -7.96749 -7.52053 -7.35436 -6.82141 -4.41059 2.69232 2.98263 3.03132 3.05262 3.14788 3.71073 3.88492 4.33247 4.51506 4.72551 4.85613 5.05529 5.29485 5.39094 5.48376 5.62351 5.62746 5.72711 5.75980 5.81561 5.93363 6.01986 6.13981 6.17525 6.23850 6.30895 6.38801 6.47835 6.87007 6.98281 7.07464 7.21146 7.31149 7.38905 7.42895 7.53873 7.74242 7.78987 7.98462 8.03176 8.23264 8.57230 8.83313 8.90746 10.12129 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018931 B = 0.005176 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.695036 B = 5407.950378 C = 5700.661704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.376 6.376 3 C 0.093 3.907 4 H 0.079 0.921 5 C 0.008 3.992 6 N -0.506 5.506 7 C 0.103 3.897 8 C -0.253 4.253 9 C -0.091 4.091 10 C -0.166 4.166 11 C 0.114 3.886 12 C -0.461 4.461 13 H 0.077 0.923 14 C 0.077 3.923 15 N -0.790 5.790 16 Si 0.908 3.092 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.226 4.226 21 C -0.076 4.076 22 C 0.001 3.999 23 C 0.096 3.904 24 H 0.076 0.924 25 O -0.565 6.565 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.281 0.719 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.934 5.903 5.029 9.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.294 6.294 3 C 0.034 3.966 4 H 0.097 0.903 5 C -0.120 4.120 6 N -0.230 5.230 7 C -0.024 4.024 8 C -0.256 4.256 9 C -0.110 4.110 10 C -0.185 4.185 11 C 0.112 3.888 12 C -0.491 4.491 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.415 5.415 16 Si 0.732 3.268 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.190 1.190 20 C -0.246 4.246 21 C -0.095 4.095 22 C -0.127 4.127 23 C 0.037 3.963 24 H 0.094 0.906 25 O -0.370 6.370 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.558 6.185 5.207 9.811 hybrid contribution 1.170 -1.357 -0.399 1.836 sum -4.388 4.828 4.808 8.105 Atomic orbital electron populations 1.22761 0.81216 1.02590 0.99725 1.87955 1.19559 1.27053 1.94809 1.22911 0.93963 0.84696 0.94995 0.90318 1.23804 0.95419 0.96684 0.96124 1.65182 1.10645 1.41184 1.05978 1.20982 0.96183 0.94640 0.90590 1.19554 0.99725 0.99204 1.07102 1.20525 0.95597 0.95957 0.98958 1.21301 1.00913 0.94147 1.02178 1.17619 0.89292 0.92023 0.89911 1.19586 1.24757 0.99876 1.04837 0.90465 1.25918 0.95042 0.98930 0.94284 1.69816 1.29066 1.35789 1.06796 0.86368 0.79873 0.80472 0.80048 1.18796 1.20293 1.18954 1.20965 0.98673 0.97724 1.07226 1.20355 0.97166 0.95356 0.96608 1.23634 0.97138 0.97867 0.94107 1.22673 0.95090 0.96748 0.81832 0.90634 1.86466 1.36399 1.87730 1.26417 0.94050 0.89720 0.94230 0.90591 0.89143 0.91612 0.91341 0.89711 0.86525 0.90765 0.89075 0.89612 0.91015 0.90341 0.77523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.85 101.05 1.10 1.53 16 2 O -0.38 -6.56 10.44 -35.23 -0.37 -6.93 16 3 C 0.09 1.55 3.30 -24.87 -0.08 1.47 16 4 H 0.08 1.24 7.76 -51.93 -0.40 0.84 16 5 C 0.01 0.13 5.78 -1.90 -0.01 0.12 16 6 N -0.51 -8.55 5.54 -231.90 -1.28 -9.83 16 7 C 0.10 1.80 5.69 -4.98 -0.03 1.77 16 8 C -0.25 -5.26 3.98 -104.33 -0.41 -5.67 16 9 C -0.09 -2.04 8.15 -39.66 -0.32 -2.37 16 10 C -0.17 -4.21 8.70 -38.87 -0.34 -4.55 16 11 C 0.11 3.00 5.58 -106.82 -0.60 2.40 16 12 C -0.46 -12.12 9.05 -37.74 -0.34 -12.46 16 13 H 0.08 1.95 7.91 -52.49 -0.42 1.54 16 14 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 15 N -0.79 -20.17 10.95 55.55 0.61 -19.56 16 16 Si 0.91 18.48 29.60 -169.99 -5.03 13.45 16 17 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 18 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 20 C -0.23 -5.47 9.80 -38.87 -0.38 -5.85 16 21 C -0.08 -1.64 7.45 -39.66 -0.30 -1.94 16 22 C 0.00 0.02 6.27 -2.75 -0.02 0.00 16 23 C 0.10 1.57 4.12 -25.38 -0.10 1.46 16 24 H 0.08 1.35 8.07 -51.92 -0.42 0.94 16 25 O -0.56 -8.16 13.26 -35.23 -0.47 -8.63 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.04 0.45 8.11 -51.93 -0.42 0.03 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.09 1.85 4.85 -51.93 -0.25 1.60 16 31 H 0.07 1.08 8.02 -51.93 -0.42 0.67 16 32 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 33 H 0.08 1.72 7.18 -52.49 -0.38 1.34 16 34 H 0.12 3.07 6.15 -52.49 -0.32 2.75 16 35 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 36 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 37 H 0.09 1.66 8.05 -52.48 -0.42 1.24 16 38 H 0.07 1.27 4.86 -51.93 -0.25 1.02 16 39 H 0.08 1.12 7.96 -51.93 -0.41 0.71 16 40 H 0.38 3.72 9.11 45.56 0.41 4.14 16 LS Contribution 321.85 15.07 4.85 4.85 Total: -1.00 -28.50 321.85 -8.56 -37.06 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -4.95 Total: 11.86 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -1.93 Total: -22.27 kcal Atomic # 7 Polarization: -28.72 SS G_CDS: -0.68 Total: -29.40 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.83 Total: -15.56 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.50 -8.56 -37.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399002466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.516 kcal (2) G-P(sol) polarization free energy of solvation -28.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds