Wall clock time and date at job start Mon Mar 30 2020 02:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99825 * 2 1 4 4 H 1.09001 * 110.64213 * 26.85168 * 3 2 1 5 5 C 1.54933 * 110.72335 * 263.50374 * 3 2 1 6 6 N 1.48528 * 103.22694 * 204.23089 * 5 3 2 7 7 C 1.46900 * 111.00491 * 159.72059 * 6 5 3 8 8 C 1.50694 * 109.47084 * 312.47790 * 7 6 5 9 9 C 1.38638 * 119.74910 * 269.72545 * 8 7 6 10 10 C 1.37622 * 120.24790 * 179.76441 * 9 8 7 11 11 C 1.40718 * 119.74314 * 0.48298 * 10 9 8 12 12 C 1.41398 * 120.24135 * 179.79125 * 11 10 9 13 13 H 1.07999 * 119.99561 * 204.37253 * 12 11 10 14 14 C 1.39945 * 120.00109 * 24.38048 * 12 11 10 15 15 N 1.30824 * 120.00075 * 17.86137 * 14 12 11 16 16 Si 1.86802 * 119.99942 * 197.86987 * 14 12 11 17 17 H 1.48492 * 109.47249 * 59.99425 * 16 14 12 18 18 H 1.48497 * 109.47004 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46663 * 299.99156 * 16 14 12 20 20 C 1.40710 * 119.51386 * 359.76784 * 11 10 9 21 21 C 1.37618 * 119.74526 * 0.02562 * 20 11 10 22 22 C 1.47904 * 105.82101 * 39.20448 * 6 5 3 23 23 C 1.53992 * 107.05702 * 334.67118 * 22 6 5 24 24 H 1.09007 * 110.30270 * 120.14214 * 23 22 6 25 25 O 1.42897 * 110.30825 * 242.30696 * 23 22 6 26 26 H 1.08995 * 109.47409 * 59.99884 * 1 2 3 27 27 H 1.08997 * 109.46974 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46975 * 299.99842 * 1 2 3 29 29 H 1.09002 * 110.67093 * 85.79508 * 5 3 2 30 30 H 1.09002 * 110.67021 * 322.65888 * 5 3 2 31 31 H 1.08997 * 109.47378 * 192.47290 * 7 6 5 32 32 H 1.09000 * 109.47043 * 72.47213 * 7 6 5 33 33 H 1.07996 * 119.87396 * 359.97438 * 9 8 7 34 34 H 1.07998 * 120.12722 * 180.27867 * 10 9 8 35 35 H 0.97006 * 120.00246 * 180.02562 * 15 14 12 36 36 H 1.08000 * 120.13114 * 180.02562 * 20 11 10 37 37 H 1.08004 * 119.87929 * 180.02562 * 21 20 11 38 38 H 1.09002 * 109.91545 * 94.02645 * 22 6 5 39 39 H 1.09004 * 109.91673 * 215.32114 * 22 6 5 40 40 H 0.96704 * 114.00016 * 298.54530 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3351 2.0267 0.4607 5 6 2.3829 1.7397 -1.4398 6 7 3.4567 2.7432 -1.2249 7 6 4.2630 2.9200 -2.4400 8 6 4.6448 1.5701 -2.9903 9 6 5.8241 0.9680 -2.5791 10 6 6.1804 -0.2668 -3.0714 11 6 5.3476 -0.9137 -4.0031 12 6 5.7056 -2.1806 -4.5190 13 1 5.3231 -2.5013 -5.4767 14 6 6.5556 -3.0188 -3.7886 15 7 6.7403 -2.8099 -2.5105 16 14 7.4264 -4.4359 -4.6388 17 1 8.2906 -3.9063 -5.7241 18 1 8.2626 -5.1662 -3.6526 19 1 6.4186 -5.3616 -5.2157 20 6 4.1557 -0.2909 -4.4172 21 6 3.8173 0.9422 -3.9085 22 6 4.2806 2.2204 -0.1134 23 6 3.3766 1.2960 0.7229 24 1 3.7859 0.2859 0.7452 25 8 3.2389 1.8058 2.0507 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.5266 2.1934 -1.9387 30 1 2.7582 0.8915 -2.0124 31 1 5.1650 3.4825 -2.1989 32 1 3.6831 3.4651 -3.1848 33 1 6.4638 1.4685 -1.8673 34 1 7.0972 -0.7360 -2.7463 35 1 7.3297 -3.3907 -2.0043 36 1 3.5090 -0.7786 -5.1315 37 1 2.9028 1.4221 -4.2245 38 1 5.1240 1.6553 -0.5103 39 1 4.6396 3.0451 0.5025 40 1 4.0721 1.8640 2.5381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399002466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:05 Heat of formation + Delta-G solvation = -86.529419 kcal Electronic energy + Delta-G solvation = -22098.445649 eV Core-core repulsion = 18877.075111 eV Total energy + Delta-G solvation = -3221.370539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.06230 -39.36816 -37.93527 -37.03383 -35.42333 -32.73039 -31.36703 -30.65363 -29.15254 -28.02483 -27.05777 -25.19696 -23.05367 -22.60573 -21.79068 -21.30758 -19.24986 -18.63318 -17.66790 -17.31928 -16.93697 -16.41489 -15.99161 -15.86489 -15.69626 -15.40646 -14.82974 -14.76999 -14.61566 -14.29300 -13.89674 -13.55515 -13.35295 -13.18116 -12.90389 -12.81971 -12.69349 -12.46718 -12.32932 -12.21159 -12.08731 -11.64396 -11.54744 -11.31051 -11.09315 -11.00839 -10.61858 -9.45156 -9.31586 -9.20058 -8.66343 -6.35787 0.92196 1.11616 1.35396 1.46245 1.50725 2.18244 2.52942 2.68697 3.11914 3.40590 3.55756 3.74073 3.81597 4.02134 4.22317 4.30124 4.34004 4.46050 4.48091 4.51937 4.54667 4.59676 4.74119 4.80398 4.85518 4.91607 4.96184 5.03358 5.06616 5.12846 5.32955 5.43437 5.65534 5.75832 5.92659 6.02277 6.07828 6.21101 6.25403 6.37339 6.68081 6.77754 6.92179 7.01507 8.30113 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018931 B = 0.005176 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.695036 B = 5407.950378 C = 5700.661704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.094 3.906 4 H 0.091 0.909 5 C 0.010 3.990 6 N -0.496 5.496 7 C 0.106 3.894 8 C -0.235 4.235 9 C -0.092 4.092 10 C -0.191 4.191 11 C 0.081 3.919 12 C -0.502 4.502 13 H 0.073 0.927 14 C 0.036 3.964 15 N -0.823 5.823 16 Si 0.980 3.020 17 H -0.260 1.260 18 H -0.267 1.267 19 H -0.260 1.260 20 C -0.245 4.245 21 C -0.073 4.073 22 C 0.003 3.997 23 C 0.099 3.901 24 H 0.050 0.950 25 O -0.567 6.567 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.288 0.712 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.053 0.947 39 H 0.103 0.897 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.640 7.415 5.579 10.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C 0.035 3.965 4 H 0.109 0.891 5 C -0.119 4.119 6 N -0.220 5.220 7 C -0.021 4.021 8 C -0.238 4.238 9 C -0.110 4.110 10 C -0.211 4.211 11 C 0.079 3.921 12 C -0.532 4.532 13 H 0.091 0.909 14 C -0.179 4.179 15 N -0.449 5.449 16 Si 0.801 3.199 17 H -0.184 1.184 18 H -0.191 1.191 19 H -0.185 1.185 20 C -0.265 4.265 21 C -0.092 4.092 22 C -0.125 4.125 23 C 0.040 3.960 24 H 0.068 0.932 25 O -0.375 6.375 26 H 0.071 0.929 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.123 0.877 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.071 0.929 39 H 0.122 0.878 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -6.268 7.715 5.774 11.495 hybrid contribution 1.276 -1.688 -0.471 2.168 sum -4.992 6.027 5.303 9.453 Atomic orbital electron populations 1.22998 0.79081 1.03850 1.01042 1.87922 1.22079 1.27710 1.94958 1.22931 0.94227 0.84777 0.94537 0.89078 1.23764 0.96022 0.95620 0.96455 1.65234 1.10375 1.40737 1.05638 1.21065 0.97351 0.92528 0.91142 1.19975 0.98185 1.00361 1.05253 1.20776 0.96506 0.95016 0.98734 1.21262 1.00753 0.95630 1.03456 1.17961 0.90425 0.92766 0.90969 1.19820 1.27080 1.00931 1.05354 0.90899 1.26738 0.95102 1.01363 0.94685 1.69875 1.29825 1.37187 1.08019 0.85283 0.78639 0.77040 0.78954 1.18446 1.19110 1.18453 1.21156 0.98400 0.99014 1.07890 1.20649 0.98043 0.94431 0.96039 1.23663 0.96303 0.98419 0.94137 1.22490 0.95057 0.95603 0.82888 0.93218 1.86429 1.38150 1.87324 1.25608 0.92925 0.88651 0.92629 0.88751 0.92523 0.90010 0.89523 0.87708 0.88422 0.90189 0.88966 0.86877 0.92892 0.87845 0.75226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.85 113.37 1.23 1.86 16 2 O -0.41 -13.92 10.44 -148.98 -1.56 -15.48 16 3 C 0.09 2.96 3.30 31.80 0.10 3.07 16 4 H 0.09 2.63 7.76 -2.39 -0.02 2.61 16 5 C 0.01 0.32 5.78 86.65 0.50 0.82 16 6 N -0.50 -15.29 5.54 -887.59 -4.91 -20.20 16 7 C 0.11 3.37 5.69 85.56 0.49 3.86 16 8 C -0.24 -9.44 3.98 -19.67 -0.08 -9.52 16 9 C -0.09 -4.09 8.15 22.22 0.18 -3.91 16 10 C -0.19 -10.06 8.70 22.73 0.20 -9.87 16 11 C 0.08 4.44 5.58 -21.29 -0.12 4.32 16 12 C -0.50 -27.63 9.05 23.46 0.21 -27.42 16 13 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 14 C 0.04 1.85 5.14 85.26 0.44 2.29 16 15 N -0.82 -43.68 10.95 21.83 0.24 -43.45 16 16 Si 0.98 38.74 29.60 68.60 2.03 40.77 16 17 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 18 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 20 C -0.25 -12.12 9.80 22.73 0.22 -11.90 16 21 C -0.07 -3.10 7.45 22.22 0.17 -2.93 16 22 C 0.00 0.09 6.27 86.45 0.54 0.64 16 23 C 0.10 3.12 4.12 31.47 0.13 3.25 16 24 H 0.05 1.81 8.07 -2.38 -0.02 1.79 16 25 O -0.57 -15.11 13.26 -148.98 -1.97 -17.08 16 26 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.06 1.15 8.11 -2.39 -0.02 1.13 16 29 H 0.09 2.69 8.14 -2.39 -0.02 2.68 16 30 H 0.06 2.27 4.85 -2.39 -0.01 2.25 16 31 H 0.08 2.38 8.02 -2.39 -0.02 2.36 16 32 H 0.09 2.50 8.08 -2.39 -0.02 2.48 16 33 H 0.10 4.17 7.18 -2.91 -0.02 4.15 16 34 H 0.10 5.42 6.15 -2.91 -0.02 5.40 16 35 H 0.29 13.83 8.30 -92.70 -0.77 13.06 16 36 H 0.09 4.39 8.06 -2.91 -0.02 4.36 16 37 H 0.11 4.14 8.05 -2.91 -0.02 4.11 16 38 H 0.05 1.81 4.86 -2.39 -0.01 1.80 16 39 H 0.10 2.60 7.96 -2.39 -0.02 2.58 16 40 H 0.40 6.88 9.11 -74.05 -0.67 6.21 16 Total: -1.00 -63.17 321.85 -1.59 -64.76 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: 0.37 Total: 36.13 kcal Atomic # 6 Polarization: -49.66 SS G_CDS: 4.21 Total: -45.45 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -4.67 Total: -63.65 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -3.53 Total: -32.56 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -63.17 -1.59 -64.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399002466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.774 kcal (2) G-P(sol) polarization free energy of solvation -63.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds