Wall clock time and date at job start Mon Mar 30 2020 01:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99719 * 2 1 4 4 O 1.20823 * 120.00576 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99682 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.47235 * 60.00441 * 5 3 2 7 7 C 1.53005 * 109.46990 * 180.02562 * 5 3 2 8 8 C 1.52996 * 109.47358 * 295.00349 * 7 5 3 9 9 N 1.46500 * 109.47263 * 180.02562 * 8 7 5 10 10 C 1.46498 * 120.00154 * 89.99773 * 9 8 7 11 11 C 1.36933 * 119.99645 * 270.00025 * 9 8 7 12 12 H 1.07999 * 120.00173 * 23.04197 * 11 9 8 13 13 C 1.38820 * 119.99945 * 203.05016 * 11 9 8 14 14 N 1.31623 * 119.99723 * 12.93255 * 13 11 9 15 15 Si 1.86794 * 119.99996 * 192.93219 * 13 11 9 16 16 H 1.48499 * 109.47568 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47095 * 119.99721 * 15 13 11 18 18 H 1.48501 * 109.47114 * 239.99618 * 15 13 11 19 19 C 1.50698 * 109.47397 * 300.00210 * 5 3 2 20 20 C 1.38231 * 120.00159 * 299.72815 * 19 5 3 21 21 C 1.38235 * 120.00105 * 179.80744 * 20 19 5 22 22 C 1.38233 * 119.99967 * 0.39831 * 21 20 19 23 23 C 1.38233 * 120.00051 * 359.85795 * 22 21 20 24 24 C 1.38234 * 120.00077 * 119.99986 * 19 5 3 25 25 H 1.09003 * 109.46794 * 299.99514 * 1 2 3 26 26 H 1.08991 * 109.47020 * 59.99740 * 1 2 3 27 27 H 1.08996 * 109.47020 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46984 * 175.00190 * 7 5 3 29 29 H 1.08999 * 109.46941 * 55.00362 * 7 5 3 30 30 H 1.08994 * 109.47161 * 59.99838 * 8 7 5 31 31 H 1.09000 * 109.46747 * 300.00315 * 8 7 5 32 32 H 1.09001 * 109.46998 * 95.12035 * 10 9 8 33 33 H 1.08995 * 109.46888 * 215.12269 * 10 9 8 34 34 H 1.09005 * 109.47020 * 335.12382 * 10 9 8 35 35 H 0.96993 * 119.99410 * 180.02562 * 14 13 11 36 36 H 1.08001 * 120.00038 * 359.97438 * 20 19 5 37 37 H 1.08001 * 119.99771 * 180.22641 * 21 20 19 38 38 H 1.07999 * 120.00287 * 179.82664 * 22 21 20 39 39 H 1.07996 * 120.00217 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.99959 * 359.97438 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8892 7 6 4.0001 2.7422 0.0011 8 6 3.5605 3.4044 -1.3062 9 7 3.9764 4.8092 -1.3059 10 6 5.2870 5.1852 -1.8418 11 6 3.1401 5.7707 -0.8047 12 1 2.3731 5.5018 -0.0935 13 6 3.2782 7.0909 -1.2108 14 7 4.0278 7.3842 -2.2521 15 14 2.4001 8.4513 -0.2793 16 1 1.6261 7.8629 0.8432 17 1 3.4000 9.4093 0.2570 18 1 1.4755 9.1631 -1.1978 19 6 4.1047 0.5920 1.2313 20 6 3.7505 1.0498 2.4866 21 6 4.2412 0.4209 3.6156 22 6 5.0927 -0.6608 3.4892 23 6 5.4511 -1.1153 2.2340 24 6 4.9572 -0.4888 1.1050 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 5.0849 2.8003 0.0911 29 1 3.5376 3.2574 0.8429 30 1 2.4759 3.3463 -1.3961 31 1 4.0230 2.8891 -2.1479 32 1 5.1801 5.4894 -2.8830 33 1 5.6929 6.0135 -1.2611 34 1 5.9631 4.3324 -1.7800 35 1 4.1245 8.3067 -2.5356 36 1 3.0883 1.8972 2.5854 37 1 3.9616 0.7764 4.5963 38 1 5.4783 -1.1504 4.3712 39 1 6.1166 -1.9601 2.1352 40 1 5.2371 -0.8441 0.1243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425395450.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:10 Heat of formation + Delta-G solvation = -39.709980 kcal Electronic energy + Delta-G solvation = -21670.265356 eV Core-core repulsion = 18450.925060 eV Total energy + Delta-G solvation = -3219.340296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.63443 -39.05869 -36.71582 -35.57778 -33.98471 -31.34280 -30.92952 -29.41962 -28.04408 -26.09340 -25.59673 -23.03085 -22.61823 -22.12204 -20.40259 -19.75095 -17.64569 -16.95615 -16.59203 -16.43100 -15.96557 -15.19058 -14.85764 -14.59839 -13.95627 -13.70303 -13.46240 -13.36583 -13.09952 -12.92974 -12.58577 -12.37042 -12.04219 -11.98520 -11.51886 -11.23317 -11.05173 -10.92279 -10.75743 -10.66713 -10.56547 -10.43673 -10.27163 -9.97483 -9.74154 -9.51873 -8.93974 -8.75215 -8.41521 -6.60399 -5.59797 -3.05307 1.28008 1.38092 2.42898 2.86820 3.45539 3.52380 3.56015 3.76336 4.59224 4.66366 4.79026 4.94345 4.99177 5.09472 5.14154 5.19311 5.23285 5.40784 5.47894 5.54768 5.57684 5.57893 5.86581 5.99298 6.03765 6.08109 6.31286 6.43537 6.46624 6.49133 6.50195 6.57053 6.83260 6.94552 6.95863 7.13799 7.47642 7.82714 7.96838 7.98800 8.54018 9.38005 10.01314 10.50097 11.45488 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017873 B = 0.004833 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.195276 B = 5792.391687 C = 6285.176156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.462 3.538 4 O -0.480 6.480 5 C -0.037 4.037 6 H 0.111 0.889 7 C -0.120 4.120 8 C 0.145 3.855 9 N -0.601 5.601 10 C 0.162 3.838 11 C -0.243 4.243 12 H 0.070 0.930 13 C -0.003 4.003 14 N -0.912 5.912 15 Si 0.902 3.098 16 H -0.278 1.278 17 H -0.291 1.291 18 H -0.291 1.291 19 C -0.069 4.069 20 C -0.108 4.108 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.121 4.121 24 C -0.106 4.106 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.029 0.971 32 H 0.030 0.970 33 H 0.039 0.961 34 H -0.004 1.004 35 H 0.249 0.751 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.064 -19.462 7.898 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.304 3.696 4 O -0.365 6.365 5 C -0.057 4.057 6 H 0.129 0.871 7 C -0.160 4.160 8 C 0.017 3.983 9 N -0.323 5.323 10 C 0.018 3.982 11 C -0.373 4.373 12 H 0.088 0.912 13 C -0.200 4.200 14 N -0.558 5.558 15 Si 0.732 3.268 16 H -0.203 1.203 17 H -0.218 1.218 18 H -0.219 1.219 19 C -0.069 4.069 20 C -0.126 4.126 21 C -0.136 4.136 22 C -0.142 4.142 23 C -0.139 4.139 24 C -0.124 4.124 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.015 0.985 35 H 0.060 0.940 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.141 -18.962 7.806 20.507 hybrid contribution -0.612 0.891 0.475 1.181 sum -0.753 -18.071 8.282 19.893 Atomic orbital electron populations 1.23208 0.76956 1.03161 1.02590 1.86521 1.22925 1.33923 1.84488 1.23710 0.91799 0.81288 0.72828 1.90743 1.66629 1.35812 1.43284 1.20206 0.87023 1.00602 0.97871 0.87083 1.22325 1.01088 0.88842 1.03743 1.20921 0.99242 0.85840 0.92259 1.43874 1.15331 1.01004 1.72114 1.20787 0.84188 0.94674 0.98581 1.19295 1.12259 0.87606 1.18152 0.91218 1.25009 0.99930 0.98126 0.96937 1.70085 1.43222 1.17449 1.25054 0.86211 0.78924 0.82326 0.79333 1.20336 1.21758 1.21850 1.19506 0.97997 0.95839 0.93601 1.21108 0.99905 0.99548 0.92027 1.21111 0.97839 0.96220 0.98417 1.21134 0.98411 0.97185 0.97428 1.21094 1.00229 1.00054 0.92524 1.21050 0.97223 0.95178 0.98965 0.92103 0.91871 0.88543 0.91229 0.90887 0.91870 0.95270 0.95193 0.94203 0.98526 0.94030 0.85950 0.86083 0.86273 0.86068 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.04 10.48 -39.26 -0.41 -5.45 16 3 C 0.46 7.43 6.61 36.01 0.24 7.67 16 4 O -0.48 -9.36 13.72 -18.75 -0.26 -9.62 16 5 C -0.04 -0.55 2.48 -92.92 -0.23 -0.78 16 6 H 0.11 1.41 7.88 -51.93 -0.41 1.00 16 7 C -0.12 -2.18 4.39 -26.73 -0.12 -2.30 16 8 C 0.14 3.17 5.38 -4.04 -0.02 3.15 16 9 N -0.60 -15.96 2.92 -181.12 -0.53 -16.49 16 10 C 0.16 4.17 8.98 59.85 0.54 4.71 16 11 C -0.24 -7.09 9.65 -15.06 -0.15 -7.23 16 12 H 0.07 2.05 7.86 -52.49 -0.41 1.63 16 13 C 0.00 -0.08 5.10 -17.43 -0.09 -0.17 16 14 N -0.91 -27.73 10.71 55.49 0.59 -27.13 16 15 Si 0.90 22.94 29.57 -169.99 -5.03 17.92 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 18 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 19 C -0.07 -0.92 4.71 -104.63 -0.49 -1.42 16 20 C -0.11 -1.45 8.87 -39.59 -0.35 -1.80 16 21 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 22 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 23 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.11 -1.21 9.67 -39.58 -0.38 -1.59 16 25 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 26 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 27 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.48 7.36 -51.93 -0.38 1.10 16 30 H 0.06 1.48 5.86 -51.93 -0.30 1.18 16 31 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 32 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 33 H 0.04 1.09 7.34 -51.93 -0.38 0.71 16 34 H 0.00 -0.09 8.03 -51.93 -0.42 -0.50 16 35 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.12 1.75 7.62 -52.49 -0.40 1.35 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.12 1.17 7.95 -52.49 -0.42 0.75 16 LS Contribution 335.62 15.07 5.06 5.06 Total: -1.00 -33.62 335.62 -7.77 -41.40 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -6.02 Total: -2.32 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -1.18 Total: -3.35 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.07 Total: -43.63 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.67 Total: -15.07 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.03 Total: 17.92 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.62 -7.77 -41.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425395450.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.686 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds