Wall clock time and date at job start Mon Mar 30 2020 01:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99719 * 2 1 4 4 O 1.20823 * 120.00576 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99682 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.47235 * 60.00441 * 5 3 2 7 7 C 1.53005 * 109.46990 * 180.02562 * 5 3 2 8 8 C 1.52996 * 109.47358 * 295.00349 * 7 5 3 9 9 N 1.46500 * 109.47263 * 180.02562 * 8 7 5 10 10 C 1.46498 * 120.00154 * 89.99773 * 9 8 7 11 11 C 1.36933 * 119.99645 * 270.00025 * 9 8 7 12 12 H 1.07999 * 120.00173 * 23.04197 * 11 9 8 13 13 C 1.38820 * 119.99945 * 203.05016 * 11 9 8 14 14 N 1.31623 * 119.99723 * 12.93255 * 13 11 9 15 15 Si 1.86794 * 119.99996 * 192.93219 * 13 11 9 16 16 H 1.48499 * 109.47568 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47095 * 119.99721 * 15 13 11 18 18 H 1.48501 * 109.47114 * 239.99618 * 15 13 11 19 19 C 1.50698 * 109.47397 * 300.00210 * 5 3 2 20 20 C 1.38231 * 120.00159 * 299.72815 * 19 5 3 21 21 C 1.38235 * 120.00105 * 179.80744 * 20 19 5 22 22 C 1.38233 * 119.99967 * 0.39831 * 21 20 19 23 23 C 1.38233 * 120.00051 * 359.85795 * 22 21 20 24 24 C 1.38234 * 120.00077 * 119.99986 * 19 5 3 25 25 H 1.09003 * 109.46794 * 299.99514 * 1 2 3 26 26 H 1.08991 * 109.47020 * 59.99740 * 1 2 3 27 27 H 1.08996 * 109.47020 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46984 * 175.00190 * 7 5 3 29 29 H 1.08999 * 109.46941 * 55.00362 * 7 5 3 30 30 H 1.08994 * 109.47161 * 59.99838 * 8 7 5 31 31 H 1.09000 * 109.46747 * 300.00315 * 8 7 5 32 32 H 1.09001 * 109.46998 * 95.12035 * 10 9 8 33 33 H 1.08995 * 109.46888 * 215.12269 * 10 9 8 34 34 H 1.09005 * 109.47020 * 335.12382 * 10 9 8 35 35 H 0.96993 * 119.99410 * 180.02562 * 14 13 11 36 36 H 1.08001 * 120.00038 * 359.97438 * 20 19 5 37 37 H 1.08001 * 119.99771 * 180.22641 * 21 20 19 38 38 H 1.07999 * 120.00287 * 179.82664 * 22 21 20 39 39 H 1.07996 * 120.00217 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.99959 * 359.97438 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8892 7 6 4.0001 2.7422 0.0011 8 6 3.5605 3.4044 -1.3062 9 7 3.9764 4.8092 -1.3059 10 6 5.2870 5.1852 -1.8418 11 6 3.1401 5.7707 -0.8047 12 1 2.3731 5.5018 -0.0935 13 6 3.2782 7.0909 -1.2108 14 7 4.0278 7.3842 -2.2521 15 14 2.4001 8.4513 -0.2793 16 1 1.6261 7.8629 0.8432 17 1 3.4000 9.4093 0.2570 18 1 1.4755 9.1631 -1.1978 19 6 4.1047 0.5920 1.2313 20 6 3.7505 1.0498 2.4866 21 6 4.2412 0.4209 3.6156 22 6 5.0927 -0.6608 3.4892 23 6 5.4511 -1.1153 2.2340 24 6 4.9572 -0.4888 1.1050 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 5.0849 2.8003 0.0911 29 1 3.5376 3.2574 0.8429 30 1 2.4759 3.3463 -1.3961 31 1 4.0230 2.8891 -2.1479 32 1 5.1801 5.4894 -2.8830 33 1 5.6929 6.0135 -1.2611 34 1 5.9631 4.3324 -1.7800 35 1 4.1245 8.3067 -2.5356 36 1 3.0883 1.8972 2.5854 37 1 3.9616 0.7764 4.5963 38 1 5.4783 -1.1504 4.3712 39 1 6.1166 -1.9601 2.1352 40 1 5.2371 -0.8441 0.1243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425395450.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:09 Heat of formation + Delta-G solvation = -58.453988 kcal Electronic energy + Delta-G solvation = -21671.078157 eV Core-core repulsion = 18450.925060 eV Total energy + Delta-G solvation = -3220.153097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.84620 -39.99882 -38.12650 -37.27690 -35.39739 -33.26613 -31.78537 -30.83302 -29.14185 -27.94277 -27.28806 -24.66095 -23.57172 -23.17516 -22.14115 -21.00798 -18.95468 -18.55973 -17.96639 -17.66844 -17.05948 -16.87172 -16.11188 -15.69648 -15.58374 -15.26291 -14.80587 -14.62711 -14.38194 -14.19559 -13.97322 -13.78465 -13.38596 -13.13309 -12.93525 -12.87419 -12.75257 -12.51274 -12.34418 -12.15241 -12.04749 -11.89486 -11.82429 -11.77626 -11.68481 -11.15509 -10.63945 -9.79743 -9.66598 -8.74970 -7.82705 -5.31118 0.38493 0.52289 1.18421 1.42198 1.42560 1.54499 1.76869 2.49856 2.87599 3.28863 3.56996 3.65167 3.79888 3.96324 4.16145 4.22511 4.30506 4.31413 4.31928 4.34801 4.47796 4.61596 4.67201 4.73503 4.77897 4.82971 4.86548 5.07257 5.17608 5.20058 5.26481 5.35937 5.55521 5.58621 5.63917 5.64411 5.67403 5.71239 6.12536 6.34660 6.76065 7.17030 7.89597 8.31489 9.20273 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017873 B = 0.004833 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.195276 B = 5792.391687 C = 6285.176156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.465 3.535 4 O -0.525 6.525 5 C -0.029 4.029 6 H 0.139 0.861 7 C -0.100 4.100 8 C 0.143 3.857 9 N -0.619 5.619 10 C 0.176 3.824 11 C -0.254 4.254 12 H 0.058 0.942 13 C -0.054 4.054 14 N -0.939 5.939 15 Si 0.965 3.035 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.289 1.289 19 C -0.086 4.086 20 C -0.132 4.132 21 C -0.127 4.127 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.107 4.107 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.136 0.864 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.005 0.995 33 H 0.014 0.986 34 H 0.036 0.964 35 H 0.248 0.752 36 H 0.098 0.902 37 H 0.134 0.866 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.953 -22.065 8.804 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.309 3.691 4 O -0.413 6.413 5 C -0.049 4.049 6 H 0.156 0.844 7 C -0.140 4.140 8 C 0.018 3.982 9 N -0.343 5.343 10 C 0.031 3.969 11 C -0.384 4.384 12 H 0.075 0.925 13 C -0.249 4.249 14 N -0.587 5.587 15 Si 0.793 3.207 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.216 1.216 19 C -0.086 4.086 20 C -0.150 4.150 21 C -0.144 4.144 22 C -0.138 4.138 23 C -0.136 4.136 24 C -0.125 4.125 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.154 0.846 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.023 0.977 33 H 0.032 0.968 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.116 0.884 37 H 0.152 0.848 38 H 0.166 0.834 39 H 0.171 0.829 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.745 -21.623 8.725 23.329 hybrid contribution -0.917 1.555 0.231 1.820 sum -0.171 -20.067 8.957 21.976 Atomic orbital electron populations 1.23516 0.75278 1.05614 1.02156 1.86504 1.24560 1.32517 1.83803 1.24002 0.92405 0.81207 0.71473 1.90731 1.67678 1.37331 1.45608 1.20089 0.86306 0.98343 1.00152 0.84351 1.21928 1.00943 0.90979 1.00171 1.21051 0.98277 0.84051 0.94867 1.44123 1.15464 1.02474 1.72191 1.20557 0.84566 0.95324 0.96407 1.19434 1.12320 0.88740 1.17956 0.92465 1.25740 1.01102 1.00117 0.97893 1.70231 1.44523 1.17656 1.26247 0.85231 0.77885 0.79413 0.78136 1.19851 1.21174 1.21587 1.19405 0.99544 0.97212 0.92440 1.21092 1.00802 0.99771 0.93339 1.21334 0.98086 0.96689 0.98335 1.21527 0.97172 0.96247 0.98844 1.21511 0.99809 1.00396 0.91906 1.21338 0.96229 0.94239 1.00718 0.92608 0.92361 0.84592 0.90610 0.93841 0.93939 0.93106 0.97688 0.96759 0.94588 0.94255 0.88386 0.84788 0.83384 0.82896 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.36 -9.62 10.48 -51.42 -0.54 -10.16 16 3 C 0.47 15.06 6.61 71.24 0.47 15.53 16 4 O -0.53 -21.38 13.72 21.97 0.30 -21.08 16 5 C -0.03 -0.84 2.48 -12.28 -0.03 -0.87 16 6 H 0.14 3.17 7.88 -2.38 -0.02 3.15 16 7 C -0.10 -3.69 4.39 30.59 0.13 -3.55 16 8 C 0.14 6.34 5.38 86.38 0.47 6.80 16 9 N -0.62 -33.53 2.92 -726.95 -2.12 -35.66 16 10 C 0.18 9.14 8.98 127.77 1.15 10.28 16 11 C -0.25 -15.22 9.65 84.04 0.81 -14.41 16 12 H 0.06 3.50 7.86 -2.91 -0.02 3.48 16 13 C -0.05 -3.23 5.10 84.86 0.43 -2.79 16 14 N -0.94 -58.30 10.71 21.65 0.23 -58.07 16 15 Si 0.97 48.15 29.57 68.60 2.03 50.18 16 16 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 17 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 18 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 19 C -0.09 -2.18 4.71 -19.87 -0.09 -2.27 16 20 C -0.13 -3.54 8.87 22.27 0.20 -3.34 16 21 C -0.13 -2.71 10.05 22.27 0.22 -2.48 16 22 C -0.12 -2.04 10.05 22.27 0.22 -1.82 16 23 C -0.12 -1.93 10.05 22.27 0.22 -1.70 16 24 C -0.11 -2.10 9.67 22.27 0.22 -1.88 16 25 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 26 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 27 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 29 H 0.04 1.84 7.36 -2.39 -0.02 1.83 16 30 H 0.04 2.06 5.86 -2.39 -0.01 2.05 16 31 H 0.05 2.00 8.07 -2.39 -0.02 1.98 16 32 H 0.00 0.27 7.34 -2.39 -0.02 0.26 16 33 H 0.01 0.77 7.34 -2.39 -0.02 0.75 16 34 H 0.04 1.54 8.03 -2.38 -0.02 1.52 16 35 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 36 H 0.10 3.02 7.62 -2.91 -0.02 2.99 16 37 H 0.13 2.38 8.06 -2.91 -0.02 2.35 16 38 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 39 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.15 2.14 7.95 -2.91 -0.02 2.11 16 Total: -1.00 -74.86 335.62 6.53 -68.34 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.01 Total: 7.20 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 5.62 Total: -0.74 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -1.89 Total: -93.72 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.24 Total: -31.24 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.18 kcal Total: -74.86 6.53 -68.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425395450.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.882 kcal (2) G-P(sol) polarization free energy of solvation -74.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds