Wall clock time and date at job start Mon Mar 30 2020 02:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35992 * 117.00180 * 2 1 4 4 C 1.39197 * 120.07162 * 270.24932 * 3 2 1 5 5 O 1.35994 * 120.07388 * 359.97438 * 4 3 2 6 6 C 1.38528 * 119.85560 * 180.26919 * 4 3 2 7 7 C 1.38295 * 119.99542 * 359.72833 * 6 4 3 8 8 C 1.38202 * 120.14513 * 0.02562 * 7 6 4 9 9 C 1.38282 * 120.15174 * 359.97438 * 8 7 6 10 10 C 1.50704 * 120.00354 * 180.02562 * 9 8 7 11 11 N 1.46901 * 109.46959 * 260.00311 * 10 9 8 12 12 C 1.46908 * 110.99920 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47216 * 174.69783 * 12 11 10 14 14 C 1.50709 * 115.54570 * 65.16842 * 13 12 11 15 15 H 1.08001 * 119.99623 * 264.95687 * 14 13 12 16 16 C 1.37877 * 119.99914 * 84.96544 * 14 13 12 17 17 N 1.31510 * 120.00024 * 353.06093 * 16 14 13 18 18 Si 1.86801 * 119.99594 * 173.05890 * 16 14 13 19 19 H 1.48494 * 109.47492 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46807 * 120.00236 * 18 16 14 21 21 H 1.48501 * 109.46975 * 239.99600 * 18 16 14 22 22 C 1.52993 * 117.50056 * 279.50017 * 13 12 11 23 23 C 1.53000 * 117.50084 * 210.83540 * 13 12 11 24 24 H 1.09004 * 109.47584 * 300.00664 * 1 2 3 25 25 H 1.08998 * 109.47333 * 60.00275 * 1 2 3 26 26 H 1.09004 * 109.47390 * 179.97438 * 1 2 3 27 27 H 0.96703 * 113.99752 * 270.27287 * 5 4 3 28 28 H 1.07999 * 120.00422 * 179.74832 * 6 4 3 29 29 H 1.07999 * 119.92443 * 179.97438 * 7 6 4 30 30 H 1.08008 * 119.92711 * 179.97438 * 8 7 6 31 31 H 1.08996 * 109.47402 * 139.99895 * 10 9 8 32 32 H 1.09002 * 109.46844 * 19.99830 * 10 9 8 33 33 H 1.00896 * 111.00661 * 56.04702 * 11 10 9 34 34 H 1.09002 * 109.46474 * 294.69987 * 12 11 10 35 35 H 1.09000 * 109.46919 * 54.69279 * 12 11 10 36 36 H 0.96997 * 119.99658 * 185.03427 * 17 16 14 37 37 H 1.08999 * 117.49896 * 359.97438 * 22 13 12 38 38 H 1.08995 * 117.50183 * 145.02307 * 22 13 12 39 39 H 1.08992 * 117.50013 * 214.98421 * 23 13 12 40 40 H 1.08995 * 117.49435 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 2.3584 1.8355 -1.2046 5 8 2.0469 1.2344 -2.3841 6 6 2.9923 3.0672 -1.1994 7 6 3.3088 3.6768 0.0009 8 6 2.9944 3.0597 1.1969 9 6 2.3615 1.8302 1.1987 10 6 2.0198 1.1606 2.5048 11 7 3.0259 0.1336 2.8066 12 6 2.7241 -0.5423 4.0755 13 6 3.7136 -1.6893 4.2904 14 6 5.1519 -1.2802 4.4778 15 1 5.8243 -1.2680 3.6327 16 6 5.6094 -0.9219 5.7281 17 7 4.7642 -0.8046 6.7289 18 14 7.4297 -0.6029 6.0005 19 1 8.1632 -0.8000 4.7245 20 1 7.6227 0.7921 6.4715 21 1 7.9501 -1.5467 7.0222 22 6 3.4428 -3.0030 3.5544 23 6 3.2200 -2.9121 5.0662 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 2.7424 0.6566 -2.7267 28 1 3.2392 3.5515 -2.1326 29 1 3.8034 4.6369 0.0036 30 1 3.2435 3.5389 2.1322 31 1 1.0371 0.6952 2.4283 32 1 2.0087 1.9038 3.3022 33 1 3.9540 0.5292 2.8191 34 1 2.8100 0.1703 4.8960 35 1 1.7093 -0.9389 4.0436 36 1 5.0737 -0.4822 7.5897 37 1 2.5596 -3.0503 2.9175 38 1 4.3050 -3.5717 3.2062 39 1 3.9356 -3.4210 5.7118 40 1 2.1905 -2.8992 5.4239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430761283.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:32 Heat of formation + Delta-G solvation = -27.785073 kcal Electronic energy + Delta-G solvation = -21604.061559 eV Core-core repulsion = 18385.238366 eV Total energy + Delta-G solvation = -3218.823193 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.28449 -37.40132 -37.08965 -36.54108 -34.24642 -31.88491 -30.63669 -29.49813 -27.01404 -26.12026 -25.20107 -23.12932 -22.29223 -21.22006 -20.83641 -19.04365 -18.11607 -17.45546 -16.54107 -15.97092 -15.56157 -15.24644 -14.66014 -14.58430 -14.29761 -14.12513 -13.85233 -13.65123 -13.08251 -12.85647 -12.41236 -12.06654 -11.98473 -11.58112 -11.40834 -11.32666 -11.14093 -10.96218 -10.80238 -10.66419 -10.40092 -10.06946 -9.65649 -9.38067 -8.70645 -8.68756 -8.47731 -8.38876 -7.99377 -7.41912 -6.00081 -4.05505 1.16796 1.25126 3.27822 3.37104 3.40416 3.41688 3.94863 4.26639 4.41987 4.81170 4.91358 5.17223 5.28251 5.30664 5.31845 5.39103 5.46307 5.50160 5.66038 5.69869 5.73165 5.89761 6.08919 6.22540 6.28737 6.38713 6.53960 6.57987 6.64305 6.67092 6.88615 6.91214 6.97613 7.22422 7.43180 7.57878 7.60796 7.80324 7.91294 8.03069 8.32082 8.54761 8.98306 9.59916 11.07960 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.004903 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.960316 B = 5709.580564 C = 6484.371158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.315 6.315 3 C 0.096 3.904 4 C 0.080 3.920 5 O -0.496 6.496 6 C -0.140 4.140 7 C -0.112 4.112 8 C -0.110 4.110 9 C -0.078 4.078 10 C 0.101 3.899 11 N -0.667 5.667 12 C 0.108 3.892 13 C 0.051 3.949 14 C -0.490 4.490 15 H 0.060 0.940 16 C 0.069 3.931 17 N -0.881 5.881 18 Si 0.886 3.114 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.284 1.284 22 C -0.198 4.198 23 C -0.163 4.163 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.092 0.908 27 H 0.390 0.610 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.071 0.929 32 H 0.031 0.969 33 H 0.347 0.653 34 H 0.034 0.966 35 H 0.036 0.964 36 H 0.258 0.742 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 7.372 -12.905 16.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.231 6.231 3 C 0.051 3.949 4 C 0.035 3.965 5 O -0.306 6.306 6 C -0.159 4.159 7 C -0.130 4.130 8 C -0.129 4.129 9 C -0.079 4.079 10 C -0.028 4.028 11 N -0.298 5.298 12 C -0.021 4.021 13 C 0.050 3.950 14 C -0.528 4.528 15 H 0.078 0.922 16 C -0.133 4.133 17 N -0.518 5.518 18 Si 0.714 3.286 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.210 1.210 22 C -0.235 4.235 23 C -0.201 4.201 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.110 0.890 27 H 0.246 0.754 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.166 0.834 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.306 6.987 -12.995 16.464 hybrid contribution 1.519 0.788 0.884 1.927 sum -5.787 7.775 -12.111 15.511 Atomic orbital electron populations 1.22918 0.79392 1.03006 1.00034 1.86102 1.19182 1.23752 1.94107 1.18881 0.98666 0.86277 0.91035 1.18850 1.00166 0.92691 0.84792 1.84757 1.45773 1.64634 1.35391 1.21286 1.00042 0.95639 0.98927 1.20989 1.00163 1.00150 0.91742 1.21085 0.98436 0.94777 0.98580 1.20281 0.98607 0.93879 0.95152 1.20749 0.97577 0.93380 0.91103 1.60441 1.04896 1.28602 1.35859 1.21433 0.96269 0.96424 0.87943 1.18713 0.94269 0.84796 0.97227 1.20521 0.93034 1.45766 0.93498 0.92170 1.25000 0.97126 0.95206 0.95979 1.70003 1.33982 1.45518 1.02327 0.86637 0.86077 0.77625 0.78285 1.19677 1.21216 1.21038 1.22854 1.00730 1.05819 0.94130 1.22532 0.98872 1.06134 0.92566 0.93948 0.93840 0.89002 0.75372 0.85390 0.85517 0.85396 0.91088 0.95127 0.83440 0.94751 0.94510 0.93226 0.91597 0.90990 0.90404 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.85 101.05 1.10 1.61 16 2 O -0.32 -5.07 9.53 -34.19 -0.33 -5.40 16 3 C 0.10 1.48 5.71 -39.12 -0.22 1.26 16 4 C 0.08 1.09 6.72 -39.12 -0.26 0.82 16 5 O -0.50 -6.05 13.29 -34.20 -0.45 -6.50 16 6 C -0.14 -1.65 9.98 -39.45 -0.39 -2.04 16 7 C -0.11 -1.29 10.04 -39.57 -0.40 -1.68 16 8 C -0.11 -1.45 9.66 -39.58 -0.38 -1.84 16 9 C -0.08 -1.19 5.40 -104.50 -0.56 -1.76 16 10 C 0.10 1.70 5.46 -4.97 -0.03 1.67 16 11 N -0.67 -13.44 6.46 -115.05 -0.74 -14.18 16 12 C 0.11 2.44 5.54 -3.82 -0.02 2.42 16 13 C 0.05 1.26 1.56 -155.66 -0.24 1.02 16 14 C -0.49 -13.22 8.33 -34.44 -0.29 -13.51 16 15 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 16 C 0.07 1.88 5.39 -17.82 -0.10 1.79 16 17 N -0.88 -24.76 12.95 55.43 0.72 -24.04 16 18 Si 0.89 20.98 29.55 -169.99 -5.02 15.96 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C -0.20 -4.56 9.96 -26.69 -0.27 -4.82 16 23 C -0.16 -3.94 9.46 -26.69 -0.25 -4.19 16 24 H 0.04 0.51 7.12 -51.93 -0.37 0.14 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.39 3.25 9.06 45.56 0.41 3.66 16 28 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.13 1.53 8.04 -52.48 -0.42 1.10 16 31 H 0.07 1.17 6.56 -51.93 -0.34 0.83 16 32 H 0.03 0.50 8.00 -51.93 -0.42 0.08 16 33 H 0.35 7.36 8.29 -39.29 -0.33 7.03 16 34 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.04 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 39 H 0.08 2.00 8.14 -51.93 -0.42 1.57 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 341.55 15.07 5.15 5.15 Total: -1.00 -30.36 341.55 -8.23 -38.59 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.23 Total: 9.69 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -2.32 Total: -19.26 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: -0.03 Total: -38.23 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -0.78 Total: -11.90 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.36 -8.23 -38.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430761283.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.809 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds