Wall clock time and date at job start Mon Mar 30 2020 02:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35992 * 117.00180 * 2 1 4 4 C 1.39197 * 120.07162 * 270.24932 * 3 2 1 5 5 O 1.35994 * 120.07388 * 359.97438 * 4 3 2 6 6 C 1.38528 * 119.85560 * 180.26919 * 4 3 2 7 7 C 1.38295 * 119.99542 * 359.72833 * 6 4 3 8 8 C 1.38202 * 120.14513 * 0.02562 * 7 6 4 9 9 C 1.38282 * 120.15174 * 359.97438 * 8 7 6 10 10 C 1.50704 * 120.00354 * 180.02562 * 9 8 7 11 11 N 1.46901 * 109.46959 * 260.00311 * 10 9 8 12 12 C 1.46908 * 110.99920 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47216 * 174.69783 * 12 11 10 14 14 C 1.50709 * 115.54570 * 65.16842 * 13 12 11 15 15 H 1.08001 * 119.99623 * 264.95687 * 14 13 12 16 16 C 1.37877 * 119.99914 * 84.96544 * 14 13 12 17 17 N 1.31510 * 120.00024 * 353.06093 * 16 14 13 18 18 Si 1.86801 * 119.99594 * 173.05890 * 16 14 13 19 19 H 1.48494 * 109.47492 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46807 * 120.00236 * 18 16 14 21 21 H 1.48501 * 109.46975 * 239.99600 * 18 16 14 22 22 C 1.52993 * 117.50056 * 279.50017 * 13 12 11 23 23 C 1.53000 * 117.50084 * 210.83540 * 13 12 11 24 24 H 1.09004 * 109.47584 * 300.00664 * 1 2 3 25 25 H 1.08998 * 109.47333 * 60.00275 * 1 2 3 26 26 H 1.09004 * 109.47390 * 179.97438 * 1 2 3 27 27 H 0.96703 * 113.99752 * 270.27287 * 5 4 3 28 28 H 1.07999 * 120.00422 * 179.74832 * 6 4 3 29 29 H 1.07999 * 119.92443 * 179.97438 * 7 6 4 30 30 H 1.08008 * 119.92711 * 179.97438 * 8 7 6 31 31 H 1.08996 * 109.47402 * 139.99895 * 10 9 8 32 32 H 1.09002 * 109.46844 * 19.99830 * 10 9 8 33 33 H 1.00896 * 111.00661 * 56.04702 * 11 10 9 34 34 H 1.09002 * 109.46474 * 294.69987 * 12 11 10 35 35 H 1.09000 * 109.46919 * 54.69279 * 12 11 10 36 36 H 0.96997 * 119.99658 * 185.03427 * 17 16 14 37 37 H 1.08999 * 117.49896 * 359.97438 * 22 13 12 38 38 H 1.08995 * 117.50183 * 145.02307 * 22 13 12 39 39 H 1.08992 * 117.50013 * 214.98421 * 23 13 12 40 40 H 1.08995 * 117.49435 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 2.3584 1.8355 -1.2046 5 8 2.0469 1.2344 -2.3841 6 6 2.9923 3.0672 -1.1994 7 6 3.3088 3.6768 0.0009 8 6 2.9944 3.0597 1.1969 9 6 2.3615 1.8302 1.1987 10 6 2.0198 1.1606 2.5048 11 7 3.0259 0.1336 2.8066 12 6 2.7241 -0.5423 4.0755 13 6 3.7136 -1.6893 4.2904 14 6 5.1519 -1.2802 4.4778 15 1 5.8243 -1.2680 3.6327 16 6 5.6094 -0.9219 5.7281 17 7 4.7642 -0.8046 6.7289 18 14 7.4297 -0.6029 6.0005 19 1 8.1632 -0.8000 4.7245 20 1 7.6227 0.7921 6.4715 21 1 7.9501 -1.5467 7.0222 22 6 3.4428 -3.0030 3.5544 23 6 3.2200 -2.9121 5.0662 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 2.7424 0.6566 -2.7267 28 1 3.2392 3.5515 -2.1326 29 1 3.8034 4.6369 0.0036 30 1 3.2435 3.5389 2.1322 31 1 1.0371 0.6952 2.4283 32 1 2.0087 1.9038 3.3022 33 1 3.9540 0.5292 2.8191 34 1 2.8100 0.1703 4.8960 35 1 1.7093 -0.9389 4.0436 36 1 5.0737 -0.4822 7.5897 37 1 2.5596 -3.0503 2.9175 38 1 4.3050 -3.5717 3.2062 39 1 3.9356 -3.4210 5.7118 40 1 2.1905 -2.8992 5.4239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430761283.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:32 Heat of formation + Delta-G solvation = -47.765805 kcal Electronic energy + Delta-G solvation = -21604.927989 eV Core-core repulsion = 18385.238366 eV Total energy + Delta-G solvation = -3219.689622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.31076 -38.81204 -38.36226 -37.75516 -35.72675 -33.95546 -31.84404 -30.48801 -28.24695 -27.64196 -26.94611 -24.63498 -23.29452 -22.83480 -22.27159 -20.96232 -19.14231 -18.46714 -17.94499 -17.59803 -16.69923 -16.59834 -16.35268 -15.95282 -15.74337 -15.35855 -15.26092 -14.95615 -14.54441 -14.30532 -13.77016 -13.36377 -13.05705 -13.02995 -12.97169 -12.89823 -12.76057 -12.52023 -12.42855 -12.27223 -11.99080 -11.69633 -11.32567 -10.70611 -10.68242 -10.39530 -9.97988 -9.66431 -9.46895 -9.06217 -8.07396 -6.18258 0.18827 0.24060 1.39561 1.43901 1.54151 2.42692 2.44170 2.94243 3.20391 3.30104 3.40577 3.75965 3.88276 4.06749 4.26206 4.32381 4.38108 4.41268 4.47885 4.54216 4.58581 4.64721 4.68733 4.75498 4.84218 4.96902 5.00687 5.05169 5.08302 5.29101 5.32732 5.41858 5.53821 5.67332 5.69301 5.74833 5.81455 6.34803 6.49659 6.51926 6.63880 6.87732 6.90385 7.49635 9.00308 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.004903 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.960316 B = 5709.580564 C = 6484.371158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.340 6.340 3 C 0.075 3.925 4 C 0.072 3.928 5 O -0.502 6.502 6 C -0.134 4.134 7 C -0.105 4.105 8 C -0.117 4.117 9 C -0.099 4.099 10 C 0.106 3.894 11 N -0.667 5.667 12 C 0.124 3.876 13 C 0.027 3.973 14 C -0.501 4.501 15 H 0.050 0.950 16 C 0.027 3.973 17 N -0.908 5.908 18 Si 0.946 3.054 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.285 1.285 22 C -0.179 4.179 23 C -0.166 4.166 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.105 0.895 27 H 0.406 0.594 28 H 0.156 0.844 29 H 0.160 0.840 30 H 0.136 0.864 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.338 0.662 34 H 0.006 0.994 35 H 0.044 0.956 36 H 0.259 0.741 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.131 8.539 -14.370 17.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.257 6.257 3 C 0.031 3.969 4 C 0.027 3.973 5 O -0.314 6.314 6 C -0.152 4.152 7 C -0.123 4.123 8 C -0.136 4.136 9 C -0.100 4.100 10 C -0.022 4.022 11 N -0.297 5.297 12 C -0.005 4.005 13 C 0.027 3.973 14 C -0.539 4.539 15 H 0.068 0.932 16 C -0.173 4.173 17 N -0.546 5.546 18 Si 0.773 3.227 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.211 1.211 22 C -0.216 4.216 23 C -0.204 4.204 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.123 0.877 27 H 0.264 0.736 28 H 0.173 0.827 29 H 0.177 0.823 30 H 0.154 0.846 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.156 0.844 34 H 0.025 0.975 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.896 8.148 -14.482 17.991 hybrid contribution 1.359 0.432 1.256 1.900 sum -5.537 8.580 -13.226 16.709 Atomic orbital electron populations 1.23049 0.78111 1.04019 1.00378 1.86045 1.20698 1.24667 1.94305 1.19121 0.99507 0.86446 0.91849 1.18981 1.00305 0.93400 0.84586 1.84712 1.46886 1.65059 1.34758 1.21622 0.98601 0.94740 1.00259 1.21349 0.99092 1.01028 0.90784 1.21282 0.98160 0.94200 0.99936 1.20194 1.00600 0.95026 0.94189 1.20703 0.96511 0.92668 0.92360 1.60407 1.05201 1.30054 1.34056 1.21146 0.95930 0.95285 0.88182 1.18888 0.94079 0.85966 0.98390 1.20686 0.94075 1.45784 0.93339 0.93198 1.25631 1.00791 0.95143 0.95728 1.70101 1.35603 1.46312 1.02614 0.85688 0.81481 0.77547 0.78016 1.19338 1.20579 1.21091 1.22809 1.01145 1.04197 0.93447 1.22452 0.98907 1.05971 0.93075 0.93864 0.93184 0.87699 0.73558 0.82672 0.82262 0.84575 0.91147 0.94891 0.84375 0.97550 0.93775 0.93230 0.89953 0.91160 0.92493 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.94 10.85 113.37 1.23 2.17 16 2 O -0.34 -10.80 9.53 -79.61 -0.76 -11.56 16 3 C 0.08 2.26 5.71 22.57 0.13 2.39 16 4 C 0.07 1.84 6.72 22.57 0.15 1.99 16 5 O -0.50 -11.35 13.29 -79.64 -1.06 -12.41 16 6 C -0.13 -2.74 9.98 22.35 0.22 -2.52 16 7 C -0.10 -2.08 10.04 22.27 0.22 -1.86 16 8 C -0.12 -2.91 9.66 22.27 0.22 -2.69 16 9 C -0.10 -2.96 5.40 -19.78 -0.11 -3.07 16 10 C 0.11 3.57 5.46 85.56 0.47 4.03 16 11 N -0.67 -27.03 6.46 -517.91 -3.34 -30.37 16 12 C 0.12 5.64 5.54 86.30 0.48 6.12 16 13 C 0.03 1.37 1.56 -52.93 -0.08 1.29 16 14 C -0.50 -27.23 8.33 25.60 0.21 -27.02 16 15 H 0.05 2.75 7.82 -2.91 -0.02 2.73 16 16 C 0.03 1.47 5.39 84.66 0.46 1.93 16 17 N -0.91 -51.55 12.95 21.45 0.28 -51.28 16 18 Si 0.95 43.18 29.55 68.60 2.03 45.21 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 22 C -0.18 -8.12 9.96 30.62 0.30 -7.82 16 23 C -0.17 -8.04 9.46 30.62 0.29 -7.75 16 24 H 0.04 1.02 7.12 -2.38 -0.02 1.00 16 25 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.41 6.07 9.06 -74.06 -0.67 5.40 16 28 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 29 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 30 H 0.14 3.05 8.04 -2.91 -0.02 3.03 16 31 H 0.07 2.33 6.56 -2.39 -0.02 2.31 16 32 H 0.03 1.08 8.00 -2.39 -0.02 1.06 16 33 H 0.34 14.55 8.29 -89.70 -0.74 13.80 16 34 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.04 1.91 8.08 -2.39 -0.02 1.89 16 36 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 37 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 38 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 40 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -64.28 341.55 0.97 -63.31 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: -0.37 Total: 29.90 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 4.19 Total: -32.81 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -3.07 Total: -81.65 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -1.82 Total: -23.97 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -64.28 0.97 -63.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430761283.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.547 kcal (2) G-P(sol) polarization free energy of solvation -64.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds