Wall clock time and date at job start Mon Mar 30 2020 02:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00545 * 2 1 4 4 C 1.52996 * 109.47711 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47218 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.46937 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.46887 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99917 * 0.02562 * 7 6 5 9 9 N 1.34769 * 119.99630 * 180.02562 * 7 6 5 10 10 C 1.39941 * 119.99795 * 174.89203 * 9 7 6 11 11 C 1.39292 * 119.94690 * 145.78387 * 10 9 7 12 12 C 1.38484 * 120.43010 * 179.97438 * 11 10 9 13 13 C 1.37694 * 120.31840 * 359.97438 * 12 11 10 14 14 C 1.40738 * 119.88391 * 0.02562 * 13 12 11 15 15 C 1.41409 * 120.20349 * 179.97438 * 14 13 12 16 16 H 1.08008 * 119.99538 * 205.17748 * 15 14 13 17 17 C 1.39928 * 120.00795 * 25.17607 * 15 14 13 18 18 N 1.30837 * 119.99653 * 16.78957 * 17 15 14 19 19 Si 1.86796 * 120.00405 * 196.79614 * 17 15 14 20 20 H 1.48495 * 109.47309 * 89.99690 * 19 17 15 21 21 H 1.48500 * 109.47271 * 209.99627 * 19 17 15 22 22 H 1.48498 * 109.46980 * 329.99690 * 19 17 15 23 23 C 1.38236 * 119.94544 * 325.51040 * 10 9 7 24 24 H 1.09004 * 109.46707 * 60.00104 * 1 2 3 25 25 H 1.09000 * 109.47432 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47088 * 300.00640 * 1 2 3 27 27 H 1.09002 * 109.47526 * 59.99221 * 3 2 1 28 28 H 1.09010 * 109.46764 * 299.99913 * 3 2 1 29 29 H 1.09005 * 109.47095 * 59.99668 * 4 3 2 30 30 H 1.08997 * 109.46772 * 299.99729 * 4 3 2 31 31 H 1.09005 * 109.46983 * 60.00059 * 5 4 3 32 32 H 1.08997 * 109.47403 * 299.99803 * 5 4 3 33 33 H 1.08997 * 109.47149 * 300.00248 * 6 5 4 34 34 H 1.09002 * 109.46517 * 60.00396 * 6 5 4 35 35 H 0.97002 * 120.00209 * 354.88726 * 9 7 6 36 36 H 1.08004 * 119.78598 * 359.97438 * 11 10 9 37 37 H 1.07997 * 119.84624 * 179.97438 * 12 11 10 38 38 H 1.07998 * 120.05402 * 179.97438 * 13 12 11 39 39 H 0.97000 * 119.99997 * 180.02562 * 18 17 15 40 40 H 1.07999 * 120.16765 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6831 2.4614 0.0013 7 6 6.2960 3.8382 0.0013 8 8 5.5831 4.8194 0.0008 9 7 7.6364 3.9789 0.0018 10 6 8.2061 5.2526 -0.1061 11 6 9.3942 5.5416 0.5611 12 6 9.9671 6.7984 0.4609 13 6 9.3679 7.7767 -0.3007 14 6 8.1673 7.4991 -0.9805 15 6 7.5459 8.4989 -1.7641 16 1 6.4820 8.4590 -1.9457 17 6 8.3093 9.5398 -2.3041 18 7 9.6110 9.4285 -2.3735 19 14 7.4699 11.0885 -2.9257 20 1 7.3644 12.0727 -1.8188 21 1 8.2674 11.6731 -4.0336 22 1 6.1105 10.7507 -3.4190 23 6 7.5920 6.2200 -0.8792 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6887 1.8464 0.8899 28 1 1.6887 1.8463 -0.8901 29 1 3.8575 0.6434 -0.8891 30 1 3.8567 0.6439 0.8909 31 1 3.8358 3.1238 0.8896 32 1 3.8366 3.1227 -0.8904 33 1 6.0040 1.9212 0.8919 34 1 6.0053 1.9198 -0.8881 35 1 8.2061 3.1975 0.0770 36 1 9.8717 4.7806 1.1606 37 1 10.8881 7.0124 0.9826 38 1 9.8182 8.7555 -0.3755 39 1 10.1403 10.1502 -2.7475 40 1 6.6734 5.9955 -1.4009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456742167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:03 Heat of formation + Delta-G solvation = -82.326402 kcal Electronic energy + Delta-G solvation = -20315.731808 eV Core-core repulsion = 17094.543526 eV Total energy + Delta-G solvation = -3221.188282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.70976 -38.22329 -37.22481 -34.88092 -34.32758 -33.00465 -30.25886 -29.80469 -28.04927 -26.64157 -25.28805 -24.09045 -21.77122 -21.03505 -20.68709 -19.46612 -17.68701 -16.64625 -16.54612 -16.48107 -15.59140 -15.45374 -15.24394 -14.94652 -14.57401 -14.13742 -13.70625 -13.19738 -12.90335 -12.73863 -12.63539 -12.17170 -11.77434 -11.70530 -11.60078 -11.51363 -11.14888 -11.12728 -11.11096 -10.89247 -10.73862 -10.44682 -10.13448 -9.91511 -9.63324 -9.37365 -9.05590 -8.92244 -7.43637 -6.89680 -6.69595 -4.32295 2.62684 2.85556 3.10348 3.15187 3.21710 3.37215 3.44142 3.78388 3.97990 4.66211 4.74175 4.76035 4.91734 5.04635 5.06333 5.16994 5.22611 5.23814 5.35845 5.58189 5.61733 5.64944 5.75945 5.77435 6.12910 6.25409 6.27216 6.40862 6.80196 6.89834 7.04296 7.07511 7.09360 7.27294 7.58762 7.75170 7.99453 8.11178 8.20877 8.28909 8.65190 8.77652 8.95985 9.00602 10.23351 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021258 B = 0.003142 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.827134 B = 8909.038141 C =10083.497720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.059 3.941 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.137 4.137 7 C 0.502 3.498 8 O -0.519 6.519 9 N -0.671 5.671 10 C 0.151 3.849 11 C -0.262 4.262 12 C -0.093 4.093 13 C -0.172 4.172 14 C 0.119 3.881 15 C -0.458 4.458 16 H 0.078 0.922 17 C 0.075 3.925 18 N -0.796 5.796 19 Si 0.909 3.091 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.210 4.210 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.040 0.960 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.398 0.602 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.280 0.720 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.019 -14.007 3.346 16.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.315 6.315 3 C -0.017 4.017 4 C -0.155 4.155 5 C -0.140 4.140 6 C -0.177 4.177 7 C 0.288 3.712 8 O -0.394 6.394 9 N -0.315 5.315 10 C 0.059 3.941 11 C -0.284 4.284 12 C -0.112 4.112 13 C -0.192 4.192 14 C 0.116 3.884 15 C -0.488 4.488 16 H 0.096 0.904 17 C -0.142 4.142 18 N -0.421 5.421 19 Si 0.734 3.266 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.232 4.232 24 H 0.059 0.941 25 H 0.103 0.897 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.232 0.768 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.253 -13.367 3.229 16.575 hybrid contribution -0.094 0.503 -0.272 0.580 sum -9.347 -12.864 2.957 16.174 Atomic orbital electron populations 1.22728 0.81123 1.02599 1.00052 1.87850 1.19668 1.28471 1.95470 1.22586 0.94291 0.84322 1.00521 1.21532 0.92926 0.97762 1.03296 1.21236 0.92991 0.95702 1.04106 1.21636 0.96817 0.95003 1.04268 1.20675 0.82322 0.91519 0.76668 1.90747 1.60684 1.40483 1.47530 1.43521 1.06597 1.08580 1.72773 1.17450 0.94528 0.84125 0.97969 1.20050 1.00165 0.98227 1.09929 1.20468 0.98194 0.93373 0.99144 1.21349 0.98839 0.99133 0.99886 1.17501 0.91065 0.90500 0.89339 1.19584 0.95917 1.05912 1.27382 0.90381 1.25905 0.94659 0.99483 0.94155 1.69833 1.06254 1.32007 1.34048 0.86297 0.80359 0.81201 0.78776 1.19283 1.20368 1.18608 1.20964 1.03435 0.93540 1.05222 0.94064 0.89747 0.94089 0.93141 0.93080 0.91043 0.91096 0.90899 0.90787 0.89090 0.88902 0.76828 0.89331 0.89066 0.86321 0.90965 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.40 -4.20 10.70 -35.23 -0.38 -4.58 16 3 C 0.06 0.57 5.94 37.16 0.22 0.80 16 4 C -0.12 -1.11 5.58 -26.73 -0.15 -1.26 16 5 C -0.10 -1.16 4.50 -26.73 -0.12 -1.28 16 6 C -0.14 -1.56 5.70 -27.88 -0.16 -1.72 16 7 C 0.50 8.68 7.56 -10.99 -0.08 8.60 16 8 O -0.52 -11.44 13.74 5.55 0.08 -11.36 16 9 N -0.67 -11.88 5.34 -9.91 -0.05 -11.93 16 10 C 0.15 3.46 6.25 -83.76 -0.52 2.93 16 11 C -0.26 -5.85 9.97 -39.10 -0.39 -6.24 16 12 C -0.09 -2.20 10.02 -39.69 -0.40 -2.59 16 13 C -0.17 -4.59 8.69 -38.84 -0.34 -4.92 16 14 C 0.12 3.32 5.57 -106.85 -0.59 2.72 16 15 C -0.46 -12.71 9.05 -37.74 -0.34 -13.06 16 16 H 0.08 2.14 7.90 -52.48 -0.41 1.72 16 17 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 18 N -0.80 -20.91 10.94 55.55 0.61 -20.30 16 19 Si 0.91 19.26 29.59 -169.99 -5.03 14.23 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 21 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 23 C -0.21 -5.52 8.39 -38.69 -0.32 -5.84 16 24 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.40 5.37 8.82 -40.82 -0.36 5.01 16 36 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 37 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.12 3.23 6.17 -52.49 -0.32 2.91 16 39 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 40 H 0.11 2.83 6.48 -52.49 -0.34 2.49 16 LS Contribution 338.27 15.07 5.10 5.10 Total: -1.00 -31.85 338.27 -7.92 -39.77 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.06 Total: 7.73 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -2.18 Total: -18.66 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.55 Total: -32.23 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.30 Total: -15.94 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.85 -7.92 -39.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456742167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.552 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds