Wall clock time and date at job start Mon Mar 30 2020 02:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00545 * 2 1 4 4 C 1.52996 * 109.47711 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47218 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.46937 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.46887 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99917 * 0.02562 * 7 6 5 9 9 N 1.34769 * 119.99630 * 180.02562 * 7 6 5 10 10 C 1.39941 * 119.99795 * 174.89203 * 9 7 6 11 11 C 1.39292 * 119.94690 * 145.78387 * 10 9 7 12 12 C 1.38484 * 120.43010 * 179.97438 * 11 10 9 13 13 C 1.37694 * 120.31840 * 359.97438 * 12 11 10 14 14 C 1.40738 * 119.88391 * 0.02562 * 13 12 11 15 15 C 1.41409 * 120.20349 * 179.97438 * 14 13 12 16 16 H 1.08008 * 119.99538 * 205.17748 * 15 14 13 17 17 C 1.39928 * 120.00795 * 25.17607 * 15 14 13 18 18 N 1.30837 * 119.99653 * 16.78957 * 17 15 14 19 19 Si 1.86796 * 120.00405 * 196.79614 * 17 15 14 20 20 H 1.48495 * 109.47309 * 89.99690 * 19 17 15 21 21 H 1.48500 * 109.47271 * 209.99627 * 19 17 15 22 22 H 1.48498 * 109.46980 * 329.99690 * 19 17 15 23 23 C 1.38236 * 119.94544 * 325.51040 * 10 9 7 24 24 H 1.09004 * 109.46707 * 60.00104 * 1 2 3 25 25 H 1.09000 * 109.47432 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47088 * 300.00640 * 1 2 3 27 27 H 1.09002 * 109.47526 * 59.99221 * 3 2 1 28 28 H 1.09010 * 109.46764 * 299.99913 * 3 2 1 29 29 H 1.09005 * 109.47095 * 59.99668 * 4 3 2 30 30 H 1.08997 * 109.46772 * 299.99729 * 4 3 2 31 31 H 1.09005 * 109.46983 * 60.00059 * 5 4 3 32 32 H 1.08997 * 109.47403 * 299.99803 * 5 4 3 33 33 H 1.08997 * 109.47149 * 300.00248 * 6 5 4 34 34 H 1.09002 * 109.46517 * 60.00396 * 6 5 4 35 35 H 0.97002 * 120.00209 * 354.88726 * 9 7 6 36 36 H 1.08004 * 119.78598 * 359.97438 * 11 10 9 37 37 H 1.07997 * 119.84624 * 179.97438 * 12 11 10 38 38 H 1.07998 * 120.05402 * 179.97438 * 13 12 11 39 39 H 0.97000 * 119.99997 * 180.02562 * 18 17 15 40 40 H 1.07999 * 120.16765 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6831 2.4614 0.0013 7 6 6.2960 3.8382 0.0013 8 8 5.5831 4.8194 0.0008 9 7 7.6364 3.9789 0.0018 10 6 8.2061 5.2526 -0.1061 11 6 9.3942 5.5416 0.5611 12 6 9.9671 6.7984 0.4609 13 6 9.3679 7.7767 -0.3007 14 6 8.1673 7.4991 -0.9805 15 6 7.5459 8.4989 -1.7641 16 1 6.4820 8.4590 -1.9457 17 6 8.3093 9.5398 -2.3041 18 7 9.6110 9.4285 -2.3735 19 14 7.4699 11.0885 -2.9257 20 1 7.3644 12.0727 -1.8188 21 1 8.2674 11.6731 -4.0336 22 1 6.1105 10.7507 -3.4190 23 6 7.5920 6.2200 -0.8792 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6887 1.8464 0.8899 28 1 1.6887 1.8463 -0.8901 29 1 3.8575 0.6434 -0.8891 30 1 3.8567 0.6439 0.8909 31 1 3.8358 3.1238 0.8896 32 1 3.8366 3.1227 -0.8904 33 1 6.0040 1.9212 0.8919 34 1 6.0053 1.9198 -0.8881 35 1 8.2061 3.1975 0.0770 36 1 9.8717 4.7806 1.1606 37 1 10.8881 7.0124 0.9826 38 1 9.8182 8.7555 -0.3755 39 1 10.1403 10.1502 -2.7475 40 1 6.6734 5.9955 -1.4009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456742167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:03 Heat of formation + Delta-G solvation = -102.604797 kcal Electronic energy + Delta-G solvation = -20316.611145 eV Core-core repulsion = 17094.543526 eV Total energy + Delta-G solvation = -3222.067620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.22067 -39.13922 -38.83986 -36.27359 -35.64326 -34.81200 -31.76145 -31.33313 -29.59862 -27.42674 -27.22858 -25.11693 -23.17742 -22.69802 -21.98899 -20.98978 -19.50727 -18.02612 -17.46423 -17.34007 -17.19073 -16.82258 -16.54878 -16.38974 -15.95174 -15.37060 -15.12165 -14.81257 -14.59771 -14.04130 -13.67823 -13.51249 -13.43564 -13.01117 -12.92873 -12.78326 -12.64126 -12.40923 -12.31050 -12.18992 -11.95946 -11.88873 -11.60028 -11.51005 -11.15707 -10.86658 -10.62507 -10.60214 -9.40867 -8.75351 -8.60983 -6.38361 0.87458 0.99416 1.35188 1.47897 1.48812 1.85298 2.19686 2.27706 2.72620 2.85364 3.69692 3.79658 3.97912 3.99891 4.31484 4.34226 4.41824 4.46608 4.52652 4.54845 4.62934 4.72816 4.78340 4.83053 4.85758 4.99084 5.05610 5.09268 5.12974 5.26526 5.29341 5.32593 5.40170 5.76812 5.86569 6.07228 6.10685 6.21420 6.34409 6.67270 6.69794 6.92824 7.00511 7.39344 8.32258 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021258 B = 0.003142 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.827134 B = 8909.038141 C =10083.497720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.055 3.945 4 C -0.107 4.107 5 C -0.099 4.099 6 C -0.122 4.122 7 C 0.495 3.505 8 O -0.573 6.573 9 N -0.661 5.661 10 C 0.158 3.842 11 C -0.252 4.252 12 C -0.092 4.092 13 C -0.200 4.200 14 C 0.087 3.913 15 C -0.503 4.503 16 H 0.062 0.938 17 C 0.037 3.963 18 N -0.822 5.822 19 Si 0.983 3.017 20 H -0.260 1.260 21 H -0.261 1.261 22 H -0.265 1.265 23 C -0.239 4.239 24 H 0.046 0.954 25 H 0.099 0.901 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.422 0.578 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.289 0.711 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.524 -15.920 4.091 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C -0.021 4.021 4 C -0.144 4.144 5 C -0.137 4.137 6 C -0.162 4.162 7 C 0.285 3.715 8 O -0.452 6.452 9 N -0.307 5.307 10 C 0.064 3.936 11 C -0.273 4.273 12 C -0.111 4.111 13 C -0.220 4.220 14 C 0.084 3.916 15 C -0.532 4.532 16 H 0.080 0.920 17 C -0.178 4.178 18 N -0.448 5.448 19 Si 0.803 3.197 20 H -0.185 1.185 21 H -0.185 1.185 22 H -0.189 1.189 23 C -0.260 4.260 24 H 0.064 0.936 25 H 0.117 0.883 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.261 0.739 36 H 0.151 0.849 37 H 0.141 0.859 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.737 -15.345 3.985 18.102 hybrid contribution -0.253 0.952 -0.433 1.076 sum -8.990 -14.393 3.553 17.338 Atomic orbital electron populations 1.22921 0.79736 1.03843 1.00668 1.87807 1.21301 1.28734 1.95590 1.22618 0.94655 0.84261 1.00571 1.21416 0.92551 0.96266 1.04215 1.21171 0.93367 0.96673 1.02516 1.21683 0.95989 0.91163 1.07323 1.21840 0.81710 0.93333 0.74626 1.90739 1.61789 1.42995 1.49640 1.43476 1.07345 1.07512 1.72382 1.17552 0.94323 0.85568 0.96134 1.20503 0.99388 0.98572 1.08866 1.20856 0.98942 0.93262 0.98015 1.21312 0.99243 0.99626 1.01803 1.17856 0.92167 0.91377 0.90157 1.19731 0.95536 1.08237 1.29715 0.91995 1.26711 0.95259 1.02037 0.93783 1.69861 1.07386 1.33232 1.34317 0.85209 0.79038 0.76767 0.78686 1.18473 1.18512 1.18884 1.20937 1.03421 0.94477 1.07196 0.93555 0.88263 0.93394 0.92990 0.93287 0.90271 0.89888 0.92303 0.92835 0.85402 0.86029 0.73928 0.84944 0.85912 0.87809 0.89985 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -8.19 10.70 -148.98 -1.59 -9.79 16 3 C 0.06 1.01 5.94 71.98 0.43 1.44 16 4 C -0.11 -1.78 5.58 30.59 0.17 -1.61 16 5 C -0.10 -2.12 4.50 30.60 0.14 -1.99 16 6 C -0.12 -2.42 5.70 29.85 0.17 -2.25 16 7 C 0.50 16.62 7.56 87.66 0.66 17.28 16 8 O -0.57 -25.97 13.74 -3.04 -0.04 -26.01 16 9 N -0.66 -22.07 5.34 -303.66 -1.62 -23.69 16 10 C 0.16 7.12 6.25 38.10 0.24 7.35 16 11 C -0.25 -10.64 9.97 22.58 0.23 -10.42 16 12 C -0.09 -4.25 10.02 22.20 0.22 -4.03 16 13 C -0.20 -10.93 8.69 22.75 0.20 -10.73 16 14 C 0.09 5.10 5.57 -21.31 -0.12 4.98 16 15 C -0.50 -29.57 9.05 23.46 0.21 -29.36 16 16 H 0.06 3.67 7.90 -2.91 -0.02 3.65 16 17 C 0.04 1.97 5.16 85.25 0.44 2.41 16 18 N -0.82 -44.35 10.94 21.82 0.24 -44.11 16 19 Si 0.98 40.49 29.59 68.60 2.03 42.52 16 20 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 21 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 23 C -0.24 -13.05 8.39 22.85 0.19 -12.86 16 24 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 25 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.42 8.10 -2.38 -0.02 1.40 16 32 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 33 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.42 9.81 8.82 -92.71 -0.82 8.99 16 36 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 37 H 0.12 4.81 8.06 -2.91 -0.02 4.78 16 38 H 0.10 5.87 6.17 -2.91 -0.02 5.85 16 39 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 40 H 0.08 4.80 6.48 -2.91 -0.02 4.78 16 Total: -1.00 -73.85 338.27 3.65 -70.20 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.21 Total: 29.09 kcal Atomic # 6 Polarization: -42.63 SS G_CDS: 4.43 Total: -38.21 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -1.38 Total: -67.80 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -1.64 Total: -35.80 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -73.85 3.65 -70.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456742167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.408 kcal (2) G-P(sol) polarization free energy of solvation -73.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds