Wall clock time and date at job start Mon Mar 30 2020 01:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00035 * 2 1 4 4 C 1.52999 * 109.47152 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47369 * 65.00188 * 4 3 2 6 6 C 1.36930 * 119.99790 * 269.72591 * 5 4 3 7 7 H 1.07999 * 120.00042 * 5.72377 * 6 5 4 8 8 C 1.38810 * 120.00011 * 185.72905 * 6 5 4 9 9 N 1.31615 * 120.00065 * 354.96336 * 8 6 5 10 10 Si 1.86799 * 120.00113 * 174.96775 * 8 6 5 11 11 H 1.48499 * 109.47200 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47519 * 120.00112 * 10 8 6 13 13 H 1.48507 * 109.46986 * 239.99943 * 10 8 6 14 14 C 1.46495 * 120.00008 * 89.99479 * 5 4 3 15 15 C 1.50709 * 109.46936 * 85.41370 * 14 5 4 16 16 C 1.38397 * 119.82614 * 275.03922 * 15 14 5 17 17 C 1.37892 * 120.17377 * 179.76270 * 16 15 14 18 18 C 1.39854 * 119.81802 * 0.53492 * 17 16 15 19 19 C 1.47168 * 120.16935 * 179.70043 * 18 17 16 20 20 C 1.50701 * 119.99657 * 0.02562 * 19 18 17 21 21 O 1.21248 * 120.00112 * 180.02562 * 19 18 17 22 22 C 1.39847 * 119.66051 * 359.72019 * 18 17 16 23 23 C 1.37885 * 119.82523 * 0.02562 * 22 18 17 24 24 H 1.08992 * 109.47313 * 300.00195 * 1 2 3 25 25 H 1.09003 * 109.46612 * 60.00438 * 1 2 3 26 26 H 1.08998 * 109.46654 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47226 * 59.99691 * 3 2 1 28 28 H 1.08997 * 109.47501 * 300.00173 * 3 2 1 29 29 H 1.08996 * 109.47681 * 304.99621 * 4 3 2 30 30 H 1.09006 * 109.46836 * 185.00152 * 4 3 2 31 31 H 0.97003 * 120.00421 * 179.97438 * 9 8 6 32 32 H 1.08999 * 109.47129 * 205.41307 * 14 5 4 33 33 H 1.08999 * 109.47739 * 325.41547 * 14 5 4 34 34 H 1.08007 * 119.91484 * 0.02562 * 16 15 14 35 35 H 1.07995 * 120.08865 * 180.23061 * 17 16 15 36 36 H 1.09005 * 109.47101 * 90.00320 * 20 19 18 37 37 H 1.09004 * 109.46728 * 209.99706 * 20 19 18 38 38 H 1.09000 * 109.47654 * 329.99840 * 20 19 18 39 39 H 1.08005 * 120.09041 * 179.97438 * 22 18 17 40 40 H 1.08004 * 119.91833 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1033 -0.7970 -1.3327 7 1 3.7904 -1.4191 -0.5071 8 6 4.6338 -1.3772 -2.4767 9 7 4.9229 -0.6293 -3.5204 10 14 4.9373 -3.2195 -2.5350 11 1 4.5318 -3.8291 -1.2431 12 1 4.1413 -3.8177 -3.6367 13 1 6.3808 -3.4761 -2.7714 14 6 4.2883 1.3998 -2.4129 15 6 5.7163 1.8730 -2.3229 16 6 6.0209 3.0067 -1.5898 17 6 7.3256 3.4433 -1.4986 18 6 8.3408 2.7436 -2.1587 19 6 9.7351 3.2066 -2.0720 20 6 10.0719 4.4371 -1.2700 21 8 10.6128 2.5979 -2.6459 22 6 8.0242 1.6021 -2.9019 23 6 6.7154 1.1752 -2.9790 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8509 0.5685 0.8427 30 1 3.9784 2.1765 0.0902 31 1 5.2940 -1.0347 -4.3198 32 1 4.1551 0.8181 -3.3251 33 1 3.6206 2.2611 -2.4306 34 1 5.2351 3.5484 -1.0842 35 1 7.5622 4.3260 -0.9231 36 1 10.2948 4.1511 -0.2420 37 1 10.9412 4.9288 -1.7068 38 1 9.2237 5.1215 -1.2809 39 1 8.8027 1.0567 -3.4147 40 1 6.4691 0.2940 -3.5529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459529377.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:52 Heat of formation + Delta-G solvation = -15.199064 kcal Electronic energy + Delta-G solvation = -21704.485553 eV Core-core repulsion = 18486.208130 eV Total energy + Delta-G solvation = -3218.277422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.39809 -37.92868 -37.26061 -35.43173 -31.94060 -31.54570 -30.30636 -29.20182 -28.33448 -25.84879 -25.76885 -23.45730 -22.07251 -21.50919 -20.18712 -19.00869 -17.20316 -16.32793 -15.90175 -15.52612 -15.10241 -14.79733 -14.67223 -14.51479 -14.26604 -13.67852 -13.47621 -13.26999 -13.05613 -12.80028 -12.24218 -12.12696 -11.95201 -11.65787 -11.52295 -11.20578 -11.15904 -10.87888 -10.71589 -10.41387 -10.32656 -10.06527 -10.03260 -9.52795 -9.29914 -9.07885 -8.72333 -8.13073 -7.81415 -6.91463 -5.52719 -3.23681 1.34681 2.27463 3.02000 3.39019 3.46644 3.47875 4.39239 4.44215 4.48056 4.67512 5.21925 5.28230 5.35730 5.44072 5.48933 5.58841 5.63158 5.67371 5.76180 5.88561 5.96896 5.97244 5.99046 6.10964 6.16245 6.31041 6.34636 6.46835 6.66658 6.71004 6.79836 7.02550 7.11459 7.49331 7.68905 7.75322 7.81848 7.89918 7.92143 8.09888 8.57210 9.28365 9.80411 10.15372 11.19267 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016912 B = 0.005680 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.230497 B = 4928.460091 C = 6206.100237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.366 6.366 3 C 0.044 3.956 4 C 0.143 3.857 5 N -0.583 5.583 6 C -0.180 4.180 7 H 0.082 0.918 8 C -0.033 4.033 9 N -0.916 5.916 10 Si 0.920 3.080 11 H -0.282 1.282 12 H -0.292 1.292 13 H -0.291 1.291 14 C 0.132 3.868 15 C -0.018 4.018 16 C -0.152 4.152 17 C -0.092 4.092 18 C -0.205 4.205 19 C 0.397 3.603 20 C -0.199 4.199 21 O -0.478 6.478 22 C -0.083 4.083 23 C -0.111 4.111 24 H 0.028 0.972 25 H 0.033 0.967 26 H 0.077 0.923 27 H 0.029 0.971 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.251 0.749 32 H 0.181 0.819 33 H 0.006 0.994 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.414 8.494 4.711 9.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.016 3.984 5 N -0.301 5.301 6 C -0.309 4.309 7 H 0.100 0.900 8 C -0.223 4.223 9 N -0.572 5.572 10 Si 0.752 3.248 11 H -0.207 1.207 12 H -0.219 1.219 13 H -0.218 1.218 14 C 0.007 3.993 15 C -0.021 4.021 16 C -0.171 4.171 17 C -0.110 4.110 18 C -0.207 4.207 19 C 0.277 3.723 20 C -0.256 4.256 21 O -0.356 6.356 22 C -0.101 4.101 23 C -0.129 4.129 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.196 0.804 33 H 0.024 0.976 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.133 0.867 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.825 7.878 4.330 9.027 hybrid contribution -0.077 -0.282 0.359 0.463 sum -0.902 7.596 4.689 8.972 Atomic orbital electron populations 1.22633 0.83262 1.01812 0.98736 1.88079 1.17581 1.27767 1.94987 1.23387 0.97859 0.84466 0.97877 1.20909 0.89804 0.97225 0.90489 1.44140 1.75251 1.03216 1.07475 1.19696 1.28790 0.82031 1.00374 0.90029 1.24657 1.02417 0.98581 0.96612 1.68888 1.52060 1.31267 1.04940 0.85855 0.77504 0.84118 0.77324 1.20700 1.21904 1.21785 1.21787 0.86307 0.93474 0.97699 1.21346 1.00446 0.90272 0.90007 1.21126 0.95435 0.98809 1.01740 1.21156 0.92900 0.98665 0.98317 1.20263 0.93878 1.00383 1.06143 1.22536 0.88174 0.84406 0.77157 1.22219 1.03584 0.98016 1.01794 1.90475 1.50259 1.55430 1.39459 1.21614 0.97765 0.94270 0.96464 1.23059 0.89928 1.01589 0.98342 0.95369 0.94830 0.90438 0.95264 0.94194 0.92780 0.92528 0.93533 0.80378 0.97632 0.87373 0.86863 0.88997 0.90138 0.89722 0.86745 0.80036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.07 10.19 -35.23 -0.36 -7.43 16 3 C 0.04 0.76 6.28 37.16 0.23 0.99 16 4 C 0.14 2.77 6.11 -4.04 -0.02 2.75 16 5 N -0.58 -13.41 2.49 -174.61 -0.44 -13.85 16 6 C -0.18 -4.59 9.33 -15.06 -0.14 -4.73 16 7 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 8 C -0.03 -0.85 5.45 -17.43 -0.09 -0.95 16 9 N -0.92 -23.05 5.73 55.49 0.32 -22.73 16 10 Si 0.92 21.26 29.56 -169.99 -5.02 16.23 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.13 2.96 5.29 -5.19 -0.03 2.93 16 15 C -0.02 -0.38 5.47 -104.50 -0.57 -0.95 16 16 C -0.15 -2.79 9.32 -39.65 -0.37 -3.16 16 17 C -0.09 -1.53 9.37 -39.10 -0.37 -1.90 16 18 C -0.21 -3.77 5.87 -105.07 -0.62 -4.39 16 19 C 0.40 6.62 7.23 -30.68 -0.22 6.40 16 20 C -0.20 -2.30 9.75 36.01 0.35 -1.94 16 21 O -0.48 -9.47 17.09 5.58 0.10 -9.38 16 22 C -0.08 -1.70 9.60 -39.11 -0.38 -2.08 16 23 C -0.11 -2.47 9.19 -39.65 -0.36 -2.83 16 24 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 30 H 0.06 0.99 7.02 -51.93 -0.36 0.62 16 31 H 0.25 6.19 8.08 -40.82 -0.33 5.86 16 32 H 0.18 4.50 4.55 -82.46 -0.37 4.13 16 33 H 0.01 0.12 8.08 -51.93 -0.42 -0.30 16 34 H 0.11 1.77 7.41 -52.48 -0.39 1.38 16 35 H 0.11 1.47 6.36 -52.49 -0.33 1.13 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.82 6.47 -51.93 -0.34 0.49 16 39 H 0.11 2.33 7.65 -52.48 -0.40 1.93 16 40 H 0.18 4.36 4.53 -52.78 -0.24 4.12 16 LS Contribution 328.64 15.07 4.95 4.95 Total: -1.00 -28.21 328.64 -7.70 -35.91 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.77 Total: 4.55 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.48 Total: -8.26 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.12 Total: -36.58 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.26 Total: -16.81 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.21 -7.70 -35.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459529377.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.712 kcal (2) G-P(sol) polarization free energy of solvation -28.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds