Wall clock time and date at job start Mon Mar 30 2020 02:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99628 * 2 1 4 4 C 1.53003 * 109.46884 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47188 * 65.00236 * 4 3 2 6 6 C 1.36945 * 119.99727 * 269.99964 * 5 4 3 7 7 H 1.07993 * 119.99907 * 141.46263 * 6 5 4 8 8 C 1.38808 * 119.99741 * 321.45386 * 6 5 4 9 9 N 1.31621 * 120.00527 * 338.83944 * 8 6 5 10 10 Si 1.86805 * 119.99867 * 158.83398 * 8 6 5 11 11 H 1.48497 * 109.47089 * 90.00110 * 10 8 6 12 12 H 1.48495 * 109.47289 * 210.00090 * 10 8 6 13 13 H 1.48499 * 109.47046 * 330.00414 * 10 8 6 14 14 C 1.46501 * 120.00489 * 89.99901 * 5 4 3 15 15 C 1.52996 * 109.46928 * 264.71016 * 14 5 4 16 16 C 1.50705 * 109.47065 * 179.97438 * 15 14 5 17 17 O 1.21254 * 119.99874 * 359.97438 * 16 15 14 18 18 C 1.47161 * 120.00225 * 180.02562 * 16 15 14 19 19 C 1.39854 * 120.17392 * 180.02562 * 18 16 15 20 20 C 1.37879 * 119.82707 * 179.97438 * 19 18 16 21 21 C 1.38408 * 120.17219 * 359.97286 * 20 19 18 22 22 C 1.38396 * 120.34980 * 0.04530 * 21 20 19 23 23 C 1.37890 * 120.17102 * 359.95458 * 22 21 20 24 24 H 1.09005 * 109.47290 * 299.99463 * 1 2 3 25 25 H 1.08989 * 109.47648 * 60.00140 * 1 2 3 26 26 H 1.09007 * 109.46900 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47025 * 60.00382 * 3 2 1 28 28 H 1.09000 * 109.47112 * 300.00343 * 3 2 1 29 29 H 1.09002 * 109.46929 * 304.99692 * 4 3 2 30 30 H 1.09005 * 109.46749 * 184.99988 * 4 3 2 31 31 H 0.96995 * 120.00470 * 180.02562 * 9 8 6 32 32 H 1.09003 * 109.47316 * 144.70616 * 14 5 4 33 33 H 1.09003 * 109.46480 * 24.70774 * 14 5 4 34 34 H 1.08997 * 109.47683 * 60.00045 * 15 14 5 35 35 H 1.08994 * 109.47457 * 299.99330 * 15 14 5 36 36 H 1.08005 * 120.08717 * 359.69410 * 19 18 16 37 37 H 1.07997 * 119.91734 * 180.02562 * 20 19 18 38 38 H 1.08004 * 119.82539 * 180.02562 * 21 20 19 39 39 H 1.07996 * 119.91670 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.08756 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2527 6 6 4.0967 -0.7969 -1.3369 7 1 3.8068 -1.3098 -2.2419 8 6 4.5924 -1.5174 -0.2590 9 7 5.3199 -0.9144 0.6573 10 14 4.2267 -3.3432 -0.1086 11 1 5.2892 -4.1191 -0.7971 12 1 4.1870 -3.7235 1.3263 13 1 2.9132 -3.6382 -0.7355 14 6 4.2863 1.4008 -2.4148 15 6 3.0582 1.4883 -3.3230 16 6 3.3776 2.3490 -4.5182 17 8 4.4786 2.8440 -4.6320 18 6 2.3528 2.5897 -5.5466 19 6 2.6455 3.3874 -6.6574 20 6 1.6801 3.6078 -7.6169 21 6 0.4243 3.0414 -7.4832 22 6 0.1268 2.2511 -6.3867 23 6 1.0814 2.0213 -5.4186 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6884 1.8465 -0.8900 29 1 3.8514 0.5684 0.8410 30 1 3.9784 2.1767 0.0889 31 1 5.6665 -1.4180 1.4103 32 1 5.1165 0.9609 -2.9675 33 1 4.5623 2.4006 -2.0795 34 1 2.2281 1.9283 -2.7704 35 1 2.7822 0.4886 -3.6583 36 1 3.6237 3.8334 -6.7611 37 1 1.9047 4.2232 -8.4755 38 1 -0.3275 3.2174 -8.2383 39 1 -0.8555 1.8130 -6.2892 40 1 0.8477 1.4047 -4.5632 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459538386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:25 Heat of formation + Delta-G solvation = -35.025752 kcal Electronic energy + Delta-G solvation = -21494.375066 eV Core-core repulsion = 18275.237894 eV Total energy + Delta-G solvation = -3219.137172 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.87572 -38.08706 -37.19799 -35.33510 -32.21386 -31.35630 -31.03649 -30.03990 -28.12810 -25.65591 -24.96999 -23.54157 -22.63063 -21.75784 -20.19468 -19.29109 -17.30125 -16.65599 -15.85924 -15.56879 -15.40791 -15.03101 -14.81010 -14.62229 -14.27734 -14.02022 -13.74583 -13.59254 -13.41352 -12.99055 -12.67474 -12.15206 -11.87638 -11.78170 -11.74064 -11.20612 -11.02590 -10.85963 -10.72184 -10.62646 -10.47795 -9.93003 -9.84615 -9.66649 -9.38342 -9.10515 -9.02945 -8.78965 -8.32246 -6.46720 -5.66437 -3.23818 0.69410 1.26707 2.60444 3.46545 3.53275 3.58960 3.78367 4.23169 4.62609 4.68907 4.73632 4.80874 4.94327 5.25391 5.32367 5.43918 5.49232 5.67460 5.72717 5.73886 5.79069 5.81661 5.87358 5.99458 6.05893 6.14170 6.24484 6.30274 6.31457 6.36422 6.50215 6.61941 6.74917 6.78111 6.80604 7.11886 7.67942 7.83159 7.94047 8.07988 8.65370 9.29785 9.93203 10.49428 11.35732 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019231 B = 0.004678 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.636181 B = 5984.463214 C = 6395.080470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.045 3.955 4 C 0.143 3.857 5 N -0.576 5.576 6 C -0.244 4.244 7 H 0.055 0.945 8 C 0.020 3.980 9 N -0.892 5.892 10 Si 0.897 3.103 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.157 3.843 15 C -0.183 4.183 16 C 0.395 3.605 17 O -0.455 6.455 18 C -0.163 4.163 19 C -0.067 4.067 20 C -0.137 4.137 21 C -0.097 4.097 22 C -0.135 4.135 23 C -0.071 4.071 24 H 0.026 0.974 25 H 0.028 0.972 26 H 0.074 0.926 27 H 0.024 0.976 28 H 0.027 0.973 29 H 0.101 0.899 30 H 0.041 0.959 31 H 0.252 0.748 32 H 0.052 0.948 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.743 7.968 -10.798 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.034 4.034 4 C 0.016 3.984 5 N -0.295 5.295 6 C -0.373 4.373 7 H 0.073 0.927 8 C -0.179 4.179 9 N -0.535 5.535 10 Si 0.727 3.273 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.030 3.970 15 C -0.223 4.223 16 C 0.272 3.728 17 O -0.331 6.331 18 C -0.164 4.164 19 C -0.086 4.086 20 C -0.155 4.155 21 C -0.115 4.115 22 C -0.153 4.153 23 C -0.089 4.089 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.093 0.907 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.119 0.881 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.924 7.983 -10.678 17.236 hybrid contribution -0.821 -0.717 0.074 1.093 sum -11.745 7.265 -10.604 17.412 Atomic orbital electron populations 1.22636 0.84390 1.01450 0.98352 1.88236 1.16403 1.27675 1.94795 1.23511 0.99049 0.84064 0.96760 1.21035 0.87373 0.96692 0.93313 1.43657 1.75512 1.02878 1.07407 1.18775 1.36060 0.81559 1.00922 0.92710 1.25061 0.96170 0.97613 0.99082 1.69986 1.33790 1.35819 1.13914 0.86409 0.78262 0.85827 0.76830 1.21727 1.21725 1.20310 1.20642 0.92602 0.94660 0.89101 1.22801 1.04051 0.99994 0.95414 1.22908 0.85946 0.78102 0.85852 1.90479 1.23717 1.42767 1.76089 1.20855 0.96201 1.01503 0.97830 1.21476 0.99585 0.95151 0.92341 1.21130 0.93667 1.01167 0.99515 1.21376 0.96645 0.96039 0.97470 1.21158 0.99721 0.99702 0.94742 1.21589 0.91997 0.96700 0.98583 0.95568 0.95376 0.90750 0.95815 0.95442 0.88121 0.94123 0.93767 0.92974 0.94169 0.89459 0.88522 0.85031 0.85699 0.85892 0.85558 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.35 -7.59 10.18 -35.23 -0.36 -7.95 16 3 C 0.05 0.90 6.28 37.16 0.23 1.13 16 4 C 0.14 3.32 5.76 -4.04 -0.02 3.29 16 5 N -0.58 -14.18 2.41 -173.24 -0.42 -14.59 16 6 C -0.24 -6.65 8.95 -15.06 -0.13 -6.78 16 7 H 0.06 1.50 7.91 -52.49 -0.42 1.09 16 8 C 0.02 0.57 4.95 -17.43 -0.09 0.49 16 9 N -0.89 -26.06 11.53 55.49 0.64 -25.42 16 10 Si 0.90 22.29 29.60 -169.99 -5.03 17.26 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.16 3.39 5.01 -4.04 -0.02 3.37 16 15 C -0.18 -3.20 4.61 -27.88 -0.13 -3.33 16 16 C 0.39 6.54 7.12 -30.69 -0.22 6.32 16 17 O -0.46 -8.72 15.98 5.58 0.09 -8.63 16 18 C -0.16 -2.26 5.87 -105.07 -0.62 -2.88 16 19 C -0.07 -0.84 9.60 -39.11 -0.38 -1.22 16 20 C -0.14 -1.38 10.03 -39.65 -0.40 -1.78 16 21 C -0.10 -0.90 10.04 -39.46 -0.40 -1.30 16 22 C -0.14 -1.35 10.03 -39.65 -0.40 -1.75 16 23 C -0.07 -0.84 9.47 -39.11 -0.37 -1.21 16 24 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.03 0.40 8.14 -51.94 -0.42 -0.03 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.50 6.48 -51.93 -0.34 0.17 16 29 H 0.10 2.71 5.58 -51.93 -0.29 2.42 16 30 H 0.04 0.88 7.86 -51.93 -0.41 0.47 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.05 1.22 8.04 -51.93 -0.42 0.80 16 33 H 0.04 0.85 7.79 -51.93 -0.40 0.45 16 34 H 0.09 1.44 6.42 -51.93 -0.33 1.10 16 35 H 0.10 1.73 8.09 -51.93 -0.42 1.31 16 36 H 0.13 1.63 7.65 -52.48 -0.40 1.23 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 39 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.13 1.52 7.05 -52.48 -0.37 1.15 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -31.66 337.66 -7.70 -39.36 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.89 Total: -1.05 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -1.82 Total: -4.06 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.22 Total: -40.02 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.27 Total: -16.58 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.66 -7.70 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459538386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.335 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds