Wall clock time and date at job start Mon Mar 30 2020 02:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99628 * 2 1 4 4 C 1.53003 * 109.46884 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47188 * 65.00236 * 4 3 2 6 6 C 1.36945 * 119.99727 * 269.99964 * 5 4 3 7 7 H 1.07993 * 119.99907 * 141.46263 * 6 5 4 8 8 C 1.38808 * 119.99741 * 321.45386 * 6 5 4 9 9 N 1.31621 * 120.00527 * 338.83944 * 8 6 5 10 10 Si 1.86805 * 119.99867 * 158.83398 * 8 6 5 11 11 H 1.48497 * 109.47089 * 90.00110 * 10 8 6 12 12 H 1.48495 * 109.47289 * 210.00090 * 10 8 6 13 13 H 1.48499 * 109.47046 * 330.00414 * 10 8 6 14 14 C 1.46501 * 120.00489 * 89.99901 * 5 4 3 15 15 C 1.52996 * 109.46928 * 264.71016 * 14 5 4 16 16 C 1.50705 * 109.47065 * 179.97438 * 15 14 5 17 17 O 1.21254 * 119.99874 * 359.97438 * 16 15 14 18 18 C 1.47161 * 120.00225 * 180.02562 * 16 15 14 19 19 C 1.39854 * 120.17392 * 180.02562 * 18 16 15 20 20 C 1.37879 * 119.82707 * 179.97438 * 19 18 16 21 21 C 1.38408 * 120.17219 * 359.97286 * 20 19 18 22 22 C 1.38396 * 120.34980 * 0.04530 * 21 20 19 23 23 C 1.37890 * 120.17102 * 359.95458 * 22 21 20 24 24 H 1.09005 * 109.47290 * 299.99463 * 1 2 3 25 25 H 1.08989 * 109.47648 * 60.00140 * 1 2 3 26 26 H 1.09007 * 109.46900 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47025 * 60.00382 * 3 2 1 28 28 H 1.09000 * 109.47112 * 300.00343 * 3 2 1 29 29 H 1.09002 * 109.46929 * 304.99692 * 4 3 2 30 30 H 1.09005 * 109.46749 * 184.99988 * 4 3 2 31 31 H 0.96995 * 120.00470 * 180.02562 * 9 8 6 32 32 H 1.09003 * 109.47316 * 144.70616 * 14 5 4 33 33 H 1.09003 * 109.46480 * 24.70774 * 14 5 4 34 34 H 1.08997 * 109.47683 * 60.00045 * 15 14 5 35 35 H 1.08994 * 109.47457 * 299.99330 * 15 14 5 36 36 H 1.08005 * 120.08717 * 359.69410 * 19 18 16 37 37 H 1.07997 * 119.91734 * 180.02562 * 20 19 18 38 38 H 1.08004 * 119.82539 * 180.02562 * 21 20 19 39 39 H 1.07996 * 119.91670 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.08756 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2527 6 6 4.0967 -0.7969 -1.3369 7 1 3.8068 -1.3098 -2.2419 8 6 4.5924 -1.5174 -0.2590 9 7 5.3199 -0.9144 0.6573 10 14 4.2267 -3.3432 -0.1086 11 1 5.2892 -4.1191 -0.7971 12 1 4.1870 -3.7235 1.3263 13 1 2.9132 -3.6382 -0.7355 14 6 4.2863 1.4008 -2.4148 15 6 3.0582 1.4883 -3.3230 16 6 3.3776 2.3490 -4.5182 17 8 4.4786 2.8440 -4.6320 18 6 2.3528 2.5897 -5.5466 19 6 2.6455 3.3874 -6.6574 20 6 1.6801 3.6078 -7.6169 21 6 0.4243 3.0414 -7.4832 22 6 0.1268 2.2511 -6.3867 23 6 1.0814 2.0213 -5.4186 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6884 1.8465 -0.8900 29 1 3.8514 0.5684 0.8410 30 1 3.9784 2.1767 0.0889 31 1 5.6665 -1.4180 1.4103 32 1 5.1165 0.9609 -2.9675 33 1 4.5623 2.4006 -2.0795 34 1 2.2281 1.9283 -2.7704 35 1 2.7822 0.4886 -3.6583 36 1 3.6237 3.8334 -6.7611 37 1 1.9047 4.2232 -8.4755 38 1 -0.3275 3.2174 -8.2383 39 1 -0.8555 1.8130 -6.2892 40 1 0.8477 1.4047 -4.5632 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459538386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:25 Heat of formation + Delta-G solvation = -53.345566 kcal Electronic energy + Delta-G solvation = -21495.169473 eV Core-core repulsion = 18275.237894 eV Total energy + Delta-G solvation = -3219.931579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.02727 -39.19825 -38.75625 -37.10473 -33.91979 -32.75254 -31.90213 -31.50878 -29.79713 -27.11860 -26.56551 -24.96500 -23.68568 -23.00838 -21.98445 -20.52991 -18.74740 -18.20737 -17.31865 -16.80972 -16.66143 -16.45625 -16.34737 -16.17409 -15.56189 -15.41765 -15.15497 -14.89923 -14.66243 -14.36519 -13.94858 -13.57804 -13.39854 -13.33669 -12.91054 -12.66549 -12.57524 -12.38439 -12.36382 -12.30524 -11.97499 -11.89967 -11.57578 -11.49571 -10.75807 -10.38860 -10.26175 -9.93166 -9.91571 -8.48676 -7.74546 -5.36240 -0.29064 0.44593 1.47308 1.47634 1.50649 1.60708 2.56602 2.88518 3.02421 3.23919 3.39120 3.74942 3.92706 4.06293 4.18387 4.22882 4.27041 4.40286 4.44925 4.50834 4.58126 4.60462 4.67854 4.76087 4.84000 4.88394 4.92464 4.96255 4.98226 5.09809 5.11504 5.36643 5.42492 5.50300 5.51730 5.72707 5.80010 5.98503 6.48908 6.56071 6.69836 7.25720 7.91971 8.44667 9.23200 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019231 B = 0.004678 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.636181 B = 5984.463214 C = 6395.080470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.056 3.944 4 C 0.140 3.860 5 N -0.589 5.589 6 C -0.241 4.241 7 H 0.049 0.951 8 C -0.029 4.029 9 N -0.924 5.924 10 Si 0.952 3.048 11 H -0.288 1.288 12 H -0.295 1.295 13 H -0.272 1.272 14 C 0.159 3.841 15 C -0.165 4.165 16 C 0.400 3.600 17 O -0.493 6.493 18 C -0.189 4.189 19 C -0.082 4.082 20 C -0.136 4.136 21 C -0.085 4.085 22 C -0.135 4.135 23 C -0.076 4.076 24 H 0.044 0.956 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.248 0.752 32 H 0.023 0.977 33 H 0.039 0.961 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.152 0.848 38 H 0.160 0.840 39 H 0.155 0.845 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.983 8.413 -12.613 21.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.314 6.314 3 C -0.022 4.022 4 C 0.014 3.986 5 N -0.309 5.309 6 C -0.372 4.372 7 H 0.067 0.933 8 C -0.225 4.225 9 N -0.569 5.569 10 Si 0.781 3.219 11 H -0.215 1.215 12 H -0.221 1.221 13 H -0.197 1.197 14 C 0.033 3.967 15 C -0.205 4.205 16 C 0.280 3.720 17 O -0.372 6.372 18 C -0.190 4.190 19 C -0.100 4.100 20 C -0.154 4.154 21 C -0.103 4.103 22 C -0.152 4.152 23 C -0.094 4.094 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.100 0.900 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.140 0.860 37 H 0.170 0.830 38 H 0.177 0.823 39 H 0.173 0.827 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.198 8.438 -12.513 20.721 hybrid contribution 0.115 -0.789 0.547 0.967 sum -14.083 7.649 -11.966 20.000 Atomic orbital electron populations 1.22839 0.81529 1.02640 1.00184 1.88154 1.19622 1.28482 1.95188 1.23236 0.96201 0.84145 0.98629 1.20972 0.90292 0.95997 0.91373 1.43813 1.76191 1.02426 1.08514 1.18934 1.34734 0.82980 1.00542 0.93288 1.25685 0.96569 1.01003 0.99246 1.70114 1.35328 1.36962 1.14478 0.85533 0.78154 0.81840 0.76373 1.21474 1.22091 1.19693 1.20601 0.93736 0.93707 0.88665 1.22496 1.02147 1.00481 0.95347 1.22988 0.86098 0.76901 0.85982 1.90466 1.25298 1.44484 1.76924 1.20605 0.96344 1.04079 0.97965 1.21561 1.00144 0.95439 0.92898 1.21460 0.93431 1.01053 0.99438 1.21853 0.96799 0.94064 0.97576 1.21532 1.00357 0.99271 0.94071 1.21715 0.91589 0.96619 0.99520 0.93740 0.93384 0.90009 0.93555 0.93641 0.91776 0.93450 0.94277 0.95803 0.94260 0.87817 0.88717 0.85998 0.83042 0.82279 0.82696 0.84403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 11.01 113.37 1.25 1.97 16 2 O -0.40 -16.49 10.18 -148.98 -1.52 -18.01 16 3 C 0.06 2.16 6.28 71.98 0.45 2.62 16 4 C 0.14 6.59 5.76 86.38 0.50 7.09 16 5 N -0.59 -29.61 2.41 -702.00 -1.69 -31.30 16 6 C -0.24 -13.43 8.95 84.03 0.75 -12.68 16 7 H 0.05 2.74 7.91 -2.91 -0.02 2.71 16 8 C -0.03 -1.63 4.95 84.86 0.42 -1.21 16 9 N -0.92 -55.63 11.53 21.65 0.25 -55.38 16 10 Si 0.95 46.51 29.60 68.60 2.03 48.54 16 11 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 12 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 13 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 14 C 0.16 7.09 5.01 86.38 0.43 7.52 16 15 C -0.17 -5.80 4.61 29.85 0.14 -5.66 16 16 C 0.40 13.47 7.12 28.03 0.20 13.67 16 17 O -0.49 -19.68 15.98 -2.95 -0.05 -19.72 16 18 C -0.19 -5.11 5.87 -20.15 -0.12 -5.23 16 19 C -0.08 -1.98 9.60 22.58 0.22 -1.76 16 20 C -0.14 -2.32 10.03 22.23 0.22 -2.10 16 21 C -0.09 -1.20 10.04 22.35 0.22 -0.97 16 22 C -0.13 -2.15 10.03 22.22 0.22 -1.93 16 23 C -0.08 -1.65 9.47 22.58 0.21 -1.44 16 24 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 1.56 6.48 -2.39 -0.02 1.55 16 29 H 0.06 3.55 5.58 -2.39 -0.01 3.54 16 30 H 0.05 2.09 7.86 -2.38 -0.02 2.07 16 31 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 32 H 0.02 1.16 8.04 -2.39 -0.02 1.15 16 33 H 0.04 1.72 7.79 -2.39 -0.02 1.70 16 34 H 0.10 3.29 6.42 -2.39 -0.02 3.27 16 35 H 0.09 3.38 8.09 -2.39 -0.02 3.36 16 36 H 0.12 3.07 7.65 -2.91 -0.02 3.05 16 37 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 38 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 40 H 0.14 2.81 7.05 -2.91 -0.02 2.79 16 Total: -1.00 -70.78 337.66 5.17 -65.61 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 1.02 Total: 10.36 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 5.12 Total: -0.12 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -1.44 Total: -86.68 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -1.56 Total: -37.73 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -70.78 5.17 -65.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459538386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.269 kcal (2) G-P(sol) polarization free energy of solvation -70.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds