Wall clock time and date at job start Mon Mar 30 2020 02:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 114.00219 * 2 1 4 4 H 1.09007 * 110.45231 * 27.39385 * 3 2 1 5 5 C 1.54473 * 110.51255 * 264.64523 * 3 2 1 6 6 O 1.44430 * 104.80275 * 217.37617 * 5 3 2 7 7 C 1.44422 * 105.27369 * 40.50984 * 6 5 3 8 8 C 1.54479 * 104.80346 * 319.49141 * 7 6 5 9 9 H 1.09010 * 110.50865 * 265.19583 * 8 7 6 10 10 N 1.46902 * 110.51276 * 142.62556 * 8 7 6 11 11 C 1.46901 * 111.00034 * 86.45284 * 10 8 7 12 12 C 1.50697 * 109.47283 * 180.02562 * 11 10 8 13 13 C 1.38633 * 119.74857 * 269.72875 * 12 11 10 14 14 C 1.37617 * 120.24879 * 179.76348 * 13 12 11 15 15 C 1.40713 * 119.74565 * 0.47997 * 14 13 12 16 16 C 1.41396 * 120.24926 * 179.79271 * 15 14 13 17 17 H 1.08004 * 120.00382 * 204.37928 * 16 15 14 18 18 C 1.39945 * 119.99895 * 24.36985 * 16 15 14 19 19 N 1.30834 * 119.99832 * 17.87562 * 18 16 15 20 20 Si 1.86796 * 120.00632 * 197.87094 * 18 16 15 21 21 H 1.48498 * 109.47157 * 89.99756 * 20 18 16 22 22 H 1.48498 * 109.47844 * 210.00461 * 20 18 16 23 23 H 1.48504 * 109.46668 * 330.00638 * 20 18 16 24 24 C 1.40723 * 119.51052 * 359.76893 * 15 14 13 25 25 C 1.37617 * 119.74384 * 0.02562 * 24 15 14 26 26 H 1.09001 * 109.47017 * 59.99612 * 1 2 3 27 27 H 1.08994 * 109.47295 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47003 * 300.00058 * 1 2 3 29 29 H 1.08999 * 110.37653 * 98.54606 * 5 3 2 30 30 H 1.09004 * 110.37684 * 336.20527 * 5 3 2 31 31 H 1.08996 * 110.37473 * 78.32280 * 7 6 5 32 32 H 1.09000 * 110.37366 * 200.54618 * 7 6 5 33 33 H 1.00898 * 110.99728 * 322.49839 * 10 8 7 34 34 H 1.09010 * 109.47010 * 300.00039 * 11 10 8 35 35 H 1.09001 * 109.47598 * 59.99642 * 11 10 8 36 36 H 1.08000 * 119.87725 * 359.97438 * 13 12 11 37 37 H 1.08005 * 120.13138 * 180.27540 * 14 13 12 38 38 H 0.96997 * 119.99963 * 179.97438 * 19 18 16 39 39 H 1.07996 * 120.12499 * 179.97438 * 24 15 14 40 40 H 1.07994 * 119.87420 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3369 2.0223 0.4699 5 6 2.3539 1.7450 -1.4405 6 8 3.5965 2.4709 -1.3183 7 6 4.3822 1.7224 -0.3654 8 6 3.3754 1.2902 0.7235 9 1 3.3794 2.0000 1.5509 10 7 3.6874 -0.0620 1.2056 11 6 4.6790 -0.0190 2.2886 12 6 4.9737 -1.4210 2.7559 13 6 4.2246 -1.9758 3.7821 14 6 4.4817 -3.2570 4.2136 15 6 5.5159 -4.0007 3.6159 16 6 5.7921 -5.3164 4.0540 17 1 6.7752 -5.7391 3.9080 18 6 4.7915 -6.0710 4.6768 19 7 3.5363 -5.7246 4.5499 20 14 5.2480 -7.5729 5.6894 21 1 5.4750 -7.1684 7.1001 22 1 4.1439 -8.5642 5.6302 23 1 6.4882 -8.1800 5.1430 24 6 6.2732 -3.4255 2.5786 25 6 5.9956 -2.1442 2.1603 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.5725 2.3941 -1.8357 30 1 2.4850 0.8736 -2.0821 31 1 4.8244 0.8476 -0.8420 32 1 5.1603 2.3536 0.0639 33 1 4.0026 -0.6515 0.4499 34 1 5.5966 0.4421 1.9230 35 1 4.2846 0.5660 3.1195 36 1 3.4342 -1.4016 4.2423 37 1 3.8940 -3.6889 5.0103 38 1 2.8428 -6.2478 4.9813 39 1 7.0695 -3.9872 2.1131 40 1 6.5757 -1.7005 1.3647 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459833774.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:22 Heat of formation + Delta-G solvation = -64.883510 kcal Electronic energy + Delta-G solvation = -21193.177931 eV Core-core repulsion = 17972.746029 eV Total energy + Delta-G solvation = -3220.431902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.93154 -37.67304 -36.97649 -35.28527 -33.52818 -30.87851 -29.47393 -29.17524 -28.07119 -26.39373 -25.77873 -23.26144 -22.75814 -20.94417 -20.63076 -19.85563 -17.26294 -17.02457 -16.80978 -15.91334 -15.31667 -15.27301 -14.77837 -14.42904 -14.18457 -14.01613 -13.85229 -13.66643 -13.08303 -12.56423 -12.35692 -12.23675 -11.96247 -11.85523 -11.53032 -11.49120 -11.37366 -11.07370 -10.88965 -10.83172 -10.43155 -10.35447 -10.04393 -9.60280 -9.45408 -9.32985 -9.10282 -7.94997 -7.40082 -7.26692 -6.72707 -4.32005 2.76691 3.08472 3.11787 3.12324 3.19437 3.56473 3.95157 4.03249 4.42203 4.52742 4.64549 4.75093 5.02030 5.09908 5.18620 5.28210 5.39515 5.55740 5.58941 5.61034 5.70882 5.74631 5.79570 5.87833 5.91958 6.25713 6.38086 6.47648 6.54822 6.99481 7.10388 7.15880 7.33548 7.39714 7.49506 7.65200 7.76121 7.93195 8.09345 8.18772 8.33929 8.68476 8.93009 9.01751 10.21493 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028140 B = 0.003667 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.768726 B = 7634.851403 C = 8251.077325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.345 6.345 3 C 0.063 3.937 4 H 0.074 0.926 5 C 0.021 3.979 6 O -0.373 6.373 7 C 0.015 3.985 8 C 0.056 3.944 9 H 0.095 0.905 10 N -0.652 5.652 11 C 0.123 3.877 12 C -0.212 4.212 13 C -0.077 4.077 14 C -0.168 4.168 15 C 0.113 3.887 16 C -0.464 4.464 17 H 0.077 0.923 18 C 0.076 3.924 19 N -0.791 5.791 20 Si 0.907 3.093 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.228 4.228 25 C -0.085 4.085 26 H 0.033 0.967 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.346 0.654 34 H 0.017 0.983 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.280 0.720 39 H 0.090 0.910 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.363 11.509 -6.633 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.262 6.262 3 C 0.003 3.997 4 H 0.092 0.908 5 C -0.056 4.056 6 O -0.291 6.291 7 C -0.064 4.064 8 C -0.056 4.056 9 H 0.113 0.887 10 N -0.284 5.284 11 C -0.004 4.004 12 C -0.214 4.214 13 C -0.096 4.096 14 C -0.187 4.187 15 C 0.110 3.890 16 C -0.494 4.494 17 H 0.095 0.905 18 C -0.142 4.142 19 N -0.416 5.416 20 Si 0.732 3.268 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.247 4.247 25 C -0.104 4.104 26 H 0.052 0.948 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.166 0.834 34 H 0.035 0.965 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.134 0.866 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.975 11.425 -6.258 13.945 hybrid contribution 0.571 -0.489 -0.034 0.753 sum -4.404 10.936 -6.292 13.364 Atomic orbital electron populations 1.22807 0.81792 1.02927 0.99187 1.88136 1.18638 1.24968 1.94449 1.23488 0.95355 0.86249 0.94641 0.90773 1.23984 0.87185 0.97021 0.97445 1.89114 1.28077 1.48470 1.63417 1.24353 0.95262 0.96810 0.89983 1.23070 0.92772 0.93437 0.96349 0.88722 1.60455 1.47185 1.07316 1.13455 1.20645 0.91320 0.95636 0.92827 1.18859 1.02581 0.95843 1.04125 1.20483 0.97164 0.95394 0.96545 1.21308 1.01874 0.93003 1.02525 1.17620 0.90305 0.92453 0.88601 1.19607 0.98101 0.98114 1.33565 0.90529 1.25906 0.94340 0.99125 0.94790 1.69845 1.00440 1.37492 1.33819 0.86335 0.79300 0.80569 0.80635 1.19309 1.20345 1.18663 1.20923 1.05511 0.96286 1.01995 1.20345 0.97009 0.94793 0.98242 0.94822 0.89459 0.94160 0.89135 0.91201 0.91851 0.88956 0.83412 0.96456 0.92012 0.89537 0.86559 0.90914 0.89210 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.85 101.05 1.10 1.42 16 2 O -0.34 -4.88 9.44 -35.23 -0.33 -5.21 16 3 C 0.06 0.76 3.61 -25.17 -0.09 0.67 16 4 H 0.07 0.79 7.82 -51.92 -0.41 0.38 16 5 C 0.02 0.24 7.38 37.93 0.28 0.52 16 6 O -0.37 -4.82 11.65 -35.23 -0.41 -5.23 16 7 C 0.01 0.18 7.24 37.93 0.27 0.45 16 8 C 0.06 0.73 3.42 -66.15 -0.23 0.50 16 9 H 0.09 1.17 7.88 -51.92 -0.41 0.76 16 10 N -0.65 -10.55 5.37 -106.33 -0.57 -11.12 16 11 C 0.12 2.12 5.65 -4.98 -0.03 2.09 16 12 C -0.21 -4.58 5.41 -104.33 -0.56 -5.14 16 13 C -0.08 -1.82 9.67 -39.66 -0.38 -2.20 16 14 C -0.17 -4.41 8.70 -38.87 -0.34 -4.74 16 15 C 0.11 3.03 5.58 -106.82 -0.60 2.44 16 16 C -0.46 -12.45 9.05 -37.74 -0.34 -12.79 16 17 H 0.08 1.98 7.91 -52.48 -0.42 1.56 16 18 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 19 N -0.79 -20.69 10.95 55.55 0.61 -20.08 16 20 Si 0.91 18.79 29.60 -169.99 -5.03 13.76 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 24 C -0.23 -5.62 9.80 -38.87 -0.38 -6.01 16 25 C -0.09 -1.89 9.67 -39.66 -0.38 -2.27 16 26 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.04 0.40 8.11 -51.93 -0.42 -0.02 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 31 H 0.06 0.79 7.61 -51.93 -0.40 0.40 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.35 5.85 8.16 -39.29 -0.32 5.53 16 34 H 0.02 0.27 8.06 -51.92 -0.42 -0.14 16 35 H 0.06 1.03 8.02 -51.93 -0.42 0.61 16 36 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.12 3.16 6.15 -52.48 -0.32 2.84 16 38 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 39 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 40 H 0.08 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 332.32 15.07 5.01 5.01 Total: -1.00 -28.54 332.32 -8.54 -37.07 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.04 Total: 9.02 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -1.77 Total: -23.22 kcal Atomic # 7 Polarization: -31.24 SS G_CDS: 0.04 Total: -31.20 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.74 Total: -10.44 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.54 -8.54 -37.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459833774.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.809 kcal (2) G-P(sol) polarization free energy of solvation -28.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds