Wall clock time and date at job start Mon Mar 30 2020 01:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.47031 * 2 1 4 4 C 1.36094 * 117.00168 * 180.02562 * 3 2 1 5 5 C 1.38560 * 120.19413 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.02333 * 180.02562 * 5 4 3 7 7 C 1.38906 * 120.93297 * 0.31658 * 6 5 4 8 8 C 1.39198 * 119.01665 * 359.25527 * 7 6 5 9 9 C 1.38497 * 120.25902 * 0.84124 * 8 7 6 10 10 N 1.39944 * 119.92405 * 179.75183 * 9 8 7 11 11 C 1.46499 * 119.99773 * 359.45227 * 10 9 8 12 12 C 1.50703 * 109.47138 * 180.27821 * 11 10 9 13 13 H 1.08001 * 120.00037 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99824 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00502 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99575 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47135 * 90.00187 * 16 14 12 18 18 H 1.48500 * 109.46751 * 210.00163 * 16 14 12 19 19 H 1.48503 * 109.47215 * 329.99996 * 16 14 12 20 20 O 1.36240 * 111.20980 * 179.30159 * 7 6 5 21 21 C 1.43765 * 109.22304 * 19.12456 * 20 7 6 22 22 H 1.08994 * 110.74919 * 90.49678 * 21 20 7 23 23 C 1.52999 * 110.74997 * 213.67446 * 21 20 7 24 24 C 1.51674 * 132.03705 * 180.90455 * 6 5 4 25 25 H 1.08996 * 109.47635 * 59.99945 * 1 2 3 26 26 H 1.09006 * 109.46783 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47162 * 299.99777 * 1 2 3 28 28 H 1.08999 * 109.47162 * 240.00223 * 2 1 3 29 29 H 1.08996 * 109.47635 * 120.00055 * 2 1 3 30 30 H 1.07998 * 119.99132 * 0.02562 * 5 4 3 31 31 H 1.08003 * 119.86888 * 180.59266 * 8 7 6 32 32 H 0.97001 * 120.00377 * 179.73274 * 10 9 8 33 33 H 1.09009 * 109.47454 * 300.27396 * 11 10 9 34 34 H 1.08998 * 109.47492 * 60.27690 * 11 10 9 35 35 H 0.96997 * 120.00009 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.47511 * 58.53872 * 23 21 20 37 37 H 1.08996 * 109.46908 * 178.54660 * 23 21 20 38 38 H 1.09000 * 109.46692 * 298.53748 * 23 21 20 39 39 H 1.09000 * 110.93295 * 282.27971 * 24 6 5 40 40 H 1.08999 * 110.93780 * 45.95256 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3555 1.5257 -0.0005 5 6 4.2033 0.4297 -0.0005 6 6 5.5697 0.6145 -0.0005 7 6 6.1176 1.8909 0.0060 8 6 5.2654 2.9916 -0.0032 9 6 3.8922 2.8111 -0.0010 10 7 3.0420 3.9226 -0.0051 11 6 3.6047 5.2752 0.0006 12 6 2.4858 6.2848 0.0016 13 1 1.4583 5.9521 -0.0021 14 6 2.7739 7.6331 0.0061 15 7 4.0251 8.0383 0.0091 16 14 1.3869 8.8844 0.0066 17 1 1.0163 9.2120 1.4067 18 1 1.8333 10.1182 -0.6890 19 1 0.2087 8.3178 -0.6978 20 8 7.4790 1.8429 0.0202 21 6 7.9114 0.5447 -0.4209 22 1 8.0579 0.5328 -1.5009 23 6 9.1927 0.1253 0.3025 24 6 6.7271 -0.3656 -0.0183 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.7938 -0.5696 -0.0005 31 1 5.6767 3.9902 -0.0079 32 1 2.0801 3.7975 -0.0075 33 1 4.2168 5.4104 0.8924 34 1 4.2206 5.4163 -0.8876 35 1 4.2277 8.9868 0.0127 36 1 9.0157 0.1138 1.3780 37 1 9.4872 -0.8707 -0.0280 38 1 9.9882 0.8343 0.0728 39 1 6.8864 -0.7980 0.9695 40 1 6.5653 -1.1459 -0.7620 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581305908.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:32 Heat of formation + Delta-G solvation = -52.996799 kcal Electronic energy + Delta-G solvation = -21242.888006 eV Core-core repulsion = 18022.971551 eV Total energy + Delta-G solvation = -3219.916455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79507 -39.11825 -36.71453 -34.50889 -32.86811 -32.45294 -31.55094 -29.67582 -28.66968 -27.30025 -25.05793 -23.71195 -22.50427 -21.59510 -21.27304 -20.34166 -17.75551 -17.49665 -16.82787 -16.01826 -15.86183 -15.41728 -14.80367 -14.49878 -13.98015 -13.86423 -13.53842 -13.36225 -13.07266 -12.83465 -12.73038 -12.55226 -12.55076 -12.22584 -11.95857 -11.81870 -11.66091 -11.25753 -11.16252 -10.97925 -10.90624 -10.83033 -10.43176 -10.05564 -9.96662 -9.35251 -9.19470 -8.50070 -7.66792 -6.32960 -6.16486 -4.21436 1.86597 2.00495 3.26215 3.32215 3.35436 3.47334 3.56664 4.21434 4.29248 4.56499 4.67998 4.72001 4.98933 5.01134 5.06507 5.20331 5.20619 5.26119 5.33198 5.43531 5.51701 5.56716 5.64176 5.81839 5.83148 5.93446 6.01287 6.05101 6.13708 6.30148 6.40432 6.57432 6.83420 6.94903 7.18556 7.46832 7.54732 7.61323 7.83977 7.99714 8.32880 8.70890 8.95262 9.44548 10.94157 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.004977 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.430321 B = 5624.419486 C = 7591.379546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.316 6.316 4 C 0.009 3.991 5 C -0.110 4.110 6 C -0.229 4.229 7 C 0.127 3.873 8 C -0.197 4.197 9 C 0.252 3.748 10 N -0.716 5.716 11 C 0.249 3.751 12 C -0.537 4.537 13 H 0.063 0.937 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.903 3.097 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.273 1.273 20 O -0.304 6.304 21 C 0.076 3.924 22 H 0.081 0.919 23 C -0.148 4.148 24 C -0.090 4.090 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.120 0.880 31 H 0.138 0.862 32 H 0.400 0.600 33 H 0.022 0.978 34 H 0.023 0.977 35 H 0.266 0.734 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.471 -18.966 -0.479 19.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.231 6.231 4 C -0.039 4.039 5 C -0.129 4.129 6 C -0.233 4.233 7 C 0.081 3.919 8 C -0.222 4.222 9 C 0.141 3.859 10 N -0.339 5.339 11 C 0.128 3.872 12 C -0.576 4.576 13 H 0.081 0.919 14 C -0.139 4.139 15 N -0.527 5.527 16 Si 0.731 3.269 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 O -0.219 6.219 21 C 0.020 3.980 22 H 0.099 0.901 23 C -0.205 4.205 24 C -0.127 4.127 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.138 0.862 31 H 0.155 0.845 32 H 0.234 0.766 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.668 -18.229 -0.427 18.428 hybrid contribution -0.934 0.323 -0.029 0.989 sum 1.734 -17.906 -0.456 17.995 Atomic orbital electron populations 1.21755 0.93309 1.02236 1.03559 1.22577 0.95340 0.82967 1.00587 1.86009 1.18668 1.27874 1.90588 1.18092 0.82280 0.92257 1.11264 1.19834 0.91665 0.97006 1.04444 1.19989 0.93651 0.93851 1.15803 1.19003 0.82425 0.93702 0.96728 1.19454 0.89441 0.98083 1.15207 1.16907 0.89598 0.85349 0.94058 1.45443 1.07521 1.04164 1.76768 1.19172 0.95074 0.76222 0.96775 1.21193 0.92845 0.90897 1.52644 0.91913 1.24922 0.95927 0.98389 0.94702 1.69948 1.17500 1.15873 1.49353 0.86414 0.81810 0.80476 0.78239 1.20461 1.21008 1.19738 1.86835 1.17933 1.34633 1.82487 1.23279 0.94841 0.81174 0.98749 0.90145 1.21858 0.95940 1.01470 1.01218 1.21611 0.91783 0.97196 1.02146 0.91584 0.90928 0.91586 0.92798 0.92789 0.86250 0.84450 0.76580 0.95968 0.95959 0.92481 0.91580 0.90749 0.91460 0.90260 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.13 16 2 C 0.06 0.74 5.47 37.16 0.20 0.94 16 3 O -0.32 -5.32 9.38 -20.04 -0.19 -5.51 16 4 C 0.01 0.16 6.71 -39.07 -0.26 -0.10 16 5 C -0.11 -1.74 9.03 -39.59 -0.36 -2.10 16 6 C -0.23 -3.70 6.27 -104.03 -0.65 -4.36 16 7 C 0.13 2.37 7.03 -38.98 -0.27 2.09 16 8 C -0.20 -4.09 9.33 -39.13 -0.36 -4.46 16 9 C 0.25 5.24 6.66 -83.67 -0.56 4.68 16 10 N -0.72 -16.20 5.72 -59.74 -0.34 -16.55 16 11 C 0.25 6.52 4.66 -5.19 -0.02 6.49 16 12 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 13 H 0.06 1.68 7.60 -52.49 -0.40 1.28 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 16 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 O -0.30 -5.26 10.81 -20.51 -0.22 -5.48 16 21 C 0.08 0.95 4.25 -25.84 -0.11 0.84 16 22 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 23 C -0.15 -1.39 9.61 37.16 0.36 -1.03 16 24 C -0.09 -1.10 6.65 -26.51 -0.18 -1.27 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.59 7.67 -51.93 -0.40 0.19 16 29 H 0.05 0.60 7.67 -51.93 -0.40 0.20 16 30 H 0.12 1.53 6.32 -52.49 -0.33 1.20 16 31 H 0.14 3.04 6.69 -52.48 -0.35 2.69 16 32 H 0.40 8.74 7.68 -40.82 -0.31 8.43 16 33 H 0.02 0.63 7.95 -51.92 -0.41 0.21 16 34 H 0.02 0.63 7.93 -51.93 -0.41 0.21 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.88 7.91 -51.93 -0.41 0.47 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 331.57 15.07 5.00 5.00 Total: -1.00 -30.58 331.57 -8.23 -38.81 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -5.94 Total: 5.71 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -2.25 Total: -12.94 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.39 Total: -41.80 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.41 Total: -10.99 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.58 -8.23 -38.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581305908.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.186 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds