Wall clock time and date at job start Mon Mar 30 2020 01:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.47031 * 2 1 4 4 C 1.36094 * 117.00168 * 180.02562 * 3 2 1 5 5 C 1.38560 * 120.19413 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.02333 * 180.02562 * 5 4 3 7 7 C 1.38906 * 120.93297 * 0.31658 * 6 5 4 8 8 C 1.39198 * 119.01665 * 359.25527 * 7 6 5 9 9 C 1.38497 * 120.25902 * 0.84124 * 8 7 6 10 10 N 1.39944 * 119.92405 * 179.75183 * 9 8 7 11 11 C 1.46499 * 119.99773 * 359.45227 * 10 9 8 12 12 C 1.50703 * 109.47138 * 180.27821 * 11 10 9 13 13 H 1.08001 * 120.00037 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99824 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00502 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99575 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47135 * 90.00187 * 16 14 12 18 18 H 1.48500 * 109.46751 * 210.00163 * 16 14 12 19 19 H 1.48503 * 109.47215 * 329.99996 * 16 14 12 20 20 O 1.36240 * 111.20980 * 179.30159 * 7 6 5 21 21 C 1.43765 * 109.22304 * 19.12456 * 20 7 6 22 22 H 1.08994 * 110.74919 * 90.49678 * 21 20 7 23 23 C 1.52999 * 110.74997 * 213.67446 * 21 20 7 24 24 C 1.51674 * 132.03705 * 180.90455 * 6 5 4 25 25 H 1.08996 * 109.47635 * 59.99945 * 1 2 3 26 26 H 1.09006 * 109.46783 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47162 * 299.99777 * 1 2 3 28 28 H 1.08999 * 109.47162 * 240.00223 * 2 1 3 29 29 H 1.08996 * 109.47635 * 120.00055 * 2 1 3 30 30 H 1.07998 * 119.99132 * 0.02562 * 5 4 3 31 31 H 1.08003 * 119.86888 * 180.59266 * 8 7 6 32 32 H 0.97001 * 120.00377 * 179.73274 * 10 9 8 33 33 H 1.09009 * 109.47454 * 300.27396 * 11 10 9 34 34 H 1.08998 * 109.47492 * 60.27690 * 11 10 9 35 35 H 0.96997 * 120.00009 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.47511 * 58.53872 * 23 21 20 37 37 H 1.08996 * 109.46908 * 178.54660 * 23 21 20 38 38 H 1.09000 * 109.46692 * 298.53748 * 23 21 20 39 39 H 1.09000 * 110.93295 * 282.27971 * 24 6 5 40 40 H 1.08999 * 110.93780 * 45.95256 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3555 1.5257 -0.0005 5 6 4.2033 0.4297 -0.0005 6 6 5.5697 0.6145 -0.0005 7 6 6.1176 1.8909 0.0060 8 6 5.2654 2.9916 -0.0032 9 6 3.8922 2.8111 -0.0010 10 7 3.0420 3.9226 -0.0051 11 6 3.6047 5.2752 0.0006 12 6 2.4858 6.2848 0.0016 13 1 1.4583 5.9521 -0.0021 14 6 2.7739 7.6331 0.0061 15 7 4.0251 8.0383 0.0091 16 14 1.3869 8.8844 0.0066 17 1 1.0163 9.2120 1.4067 18 1 1.8333 10.1182 -0.6890 19 1 0.2087 8.3178 -0.6978 20 8 7.4790 1.8429 0.0202 21 6 7.9114 0.5447 -0.4209 22 1 8.0579 0.5328 -1.5009 23 6 9.1927 0.1253 0.3025 24 6 6.7271 -0.3656 -0.0183 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.7938 -0.5696 -0.0005 31 1 5.6767 3.9902 -0.0079 32 1 2.0801 3.7975 -0.0075 33 1 4.2168 5.4104 0.8924 34 1 4.2206 5.4163 -0.8876 35 1 4.2277 8.9868 0.0127 36 1 9.0157 0.1138 1.3780 37 1 9.4872 -0.8707 -0.0280 38 1 9.9882 0.8343 0.0728 39 1 6.8864 -0.7980 0.9695 40 1 6.5653 -1.1459 -0.7620 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581305908.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:31 Heat of formation + Delta-G solvation = -72.554815 kcal Electronic energy + Delta-G solvation = -21243.736105 eV Core-core repulsion = 18022.971551 eV Total energy + Delta-G solvation = -3220.764555 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.08682 -40.39327 -38.17257 -36.16445 -34.60773 -33.75793 -32.55556 -31.08624 -30.00002 -28.99017 -26.54296 -24.98452 -24.12996 -22.77507 -22.45402 -21.80124 -19.43975 -18.74907 -18.15651 -17.80141 -16.97840 -16.80203 -16.43430 -15.91639 -15.56718 -15.24968 -15.02487 -14.85641 -14.29769 -14.05760 -13.94975 -13.85944 -13.72721 -13.36541 -13.09798 -13.02753 -12.88057 -12.83283 -12.67181 -12.41311 -12.20989 -12.09808 -11.90218 -11.51687 -11.45794 -11.32704 -10.77293 -10.41705 -9.16699 -8.31769 -7.89830 -6.46461 0.42770 0.57492 1.39391 1.41788 1.53154 2.25690 2.32006 2.38490 2.78110 2.95833 3.03041 3.54071 3.70437 3.94483 4.09508 4.14769 4.20781 4.23338 4.38138 4.43684 4.57719 4.62984 4.72855 4.83639 4.84550 4.91108 4.97184 5.00936 5.05291 5.14091 5.21505 5.25355 5.27320 5.31574 5.44297 5.52484 5.58777 5.85446 6.25248 6.32225 6.56776 6.77556 7.11097 7.27030 8.80370 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.004977 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.430321 B = 5624.419486 C = 7591.379546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.337 6.337 4 C 0.015 3.985 5 C -0.102 4.102 6 C -0.212 4.212 7 C 0.107 3.893 8 C -0.220 4.220 9 C 0.216 3.784 10 N -0.725 5.725 11 C 0.273 3.727 12 C -0.558 4.558 13 H 0.070 0.930 14 C 0.009 3.991 15 N -0.927 5.927 16 Si 0.981 3.019 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.262 1.262 20 O -0.330 6.330 21 C 0.063 3.937 22 H 0.091 0.909 23 C -0.142 4.142 24 C -0.083 4.083 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.162 0.838 31 H 0.102 0.898 32 H 0.401 0.599 33 H -0.011 1.011 34 H -0.010 1.010 35 H 0.270 0.730 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.688 -22.282 -0.590 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 O -0.252 6.252 4 C -0.033 4.033 5 C -0.121 4.121 6 C -0.215 4.215 7 C 0.061 3.939 8 C -0.245 4.245 9 C 0.109 3.891 10 N -0.352 5.352 11 C 0.150 3.850 12 C -0.596 4.596 13 H 0.088 0.912 14 C -0.191 4.191 15 N -0.566 5.566 16 Si 0.804 3.196 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.186 1.186 20 O -0.245 6.245 21 C 0.007 3.993 22 H 0.108 0.892 23 C -0.199 4.199 24 C -0.119 4.119 25 H 0.076 0.924 26 H 0.123 0.877 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.180 0.820 31 H 0.120 0.880 32 H 0.236 0.764 33 H 0.007 0.993 34 H 0.008 0.992 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.082 0.918 39 H 0.118 0.882 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.904 -21.616 -0.538 21.707 hybrid contribution -0.575 1.155 -0.004 1.290 sum 1.329 -20.462 -0.543 20.512 Atomic orbital electron populations 1.21797 0.91885 1.04091 1.02777 1.23000 0.96557 0.80933 1.02114 1.86013 1.17694 1.31155 1.90374 1.18142 0.83547 0.91551 1.10033 1.20238 0.91230 0.98067 1.02613 1.20582 0.94888 0.93881 1.12142 1.19107 0.83270 0.94105 0.97386 1.19386 0.90450 0.97613 1.17032 1.17130 0.89418 0.86151 0.96366 1.45011 1.07563 1.03282 1.79348 1.18578 0.94190 0.78527 0.93689 1.21555 0.93338 0.91736 1.52937 0.91197 1.25960 0.98735 1.00591 0.93788 1.70093 1.19934 1.16565 1.50004 0.85216 0.78350 0.77365 0.78657 1.19524 1.20358 1.18575 1.86822 1.17163 1.37832 1.82707 1.23747 0.96404 0.79208 0.99902 0.89155 1.21893 0.94150 1.03162 1.00713 1.21767 0.88991 0.96752 1.04430 0.92372 0.87683 0.92415 0.91067 0.91156 0.82025 0.87987 0.76384 0.99317 0.99221 0.92143 0.91915 0.87280 0.91791 0.88244 0.86816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 10.28 71.98 0.74 -1.87 16 2 C 0.05 1.03 5.47 71.98 0.39 1.43 16 3 O -0.34 -11.05 9.38 -94.62 -0.89 -11.94 16 4 C 0.02 0.56 6.71 22.60 0.15 0.71 16 5 C -0.10 -2.97 9.03 22.26 0.20 -2.76 16 6 C -0.21 -6.37 6.27 -19.48 -0.12 -6.49 16 7 C 0.11 4.08 7.03 22.66 0.16 4.24 16 8 C -0.22 -9.93 9.33 22.56 0.21 -9.72 16 9 C 0.22 9.56 6.66 38.16 0.25 9.81 16 10 N -0.73 -35.32 5.72 -342.91 -1.96 -37.29 16 11 C 0.27 15.59 4.66 85.63 0.40 15.99 16 12 C -0.56 -32.41 9.28 25.60 0.24 -32.18 16 13 H 0.07 3.86 7.60 -2.91 -0.02 3.84 16 14 C 0.01 0.52 5.46 84.66 0.46 0.98 16 15 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 16 Si 0.98 44.25 29.54 68.60 2.03 46.28 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 19 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 20 O -0.33 -11.54 10.81 -96.29 -1.04 -12.58 16 21 C 0.06 1.42 4.25 31.17 0.13 1.55 16 22 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 23 C -0.14 -2.27 9.61 71.98 0.69 -1.58 16 24 C -0.08 -1.67 6.65 30.74 0.20 -1.46 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.28 7.67 -2.39 -0.02 1.27 16 29 H 0.07 1.28 7.67 -2.39 -0.02 1.26 16 30 H 0.16 3.31 6.32 -2.91 -0.02 3.29 16 31 H 0.10 5.17 6.69 -2.91 -0.02 5.15 16 32 H 0.40 18.63 7.68 -92.71 -0.71 17.92 16 33 H -0.01 -0.68 7.95 -2.38 -0.02 -0.70 16 34 H -0.01 -0.62 7.93 -2.39 -0.02 -0.64 16 35 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 37 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.10 1.70 7.91 -2.39 -0.02 1.68 16 40 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -71.77 331.57 2.86 -68.91 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.33 Total: 24.35 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 4.12 Total: -21.35 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -1.68 Total: -93.67 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -1.93 Total: -24.52 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -71.77 2.86 -68.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581305908.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.649 kcal (2) G-P(sol) polarization free energy of solvation -71.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds