Wall clock time and date at job start Mon Mar 30 2020 01:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42904 * 109.46703 * 2 1 4 4 C 1.36092 * 116.99625 * 180.02562 * 3 2 1 5 5 C 1.38563 * 120.19706 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.02370 * 179.65802 * 5 4 3 7 7 C 1.38901 * 120.93488 * 0.05749 * 6 5 4 8 8 C 1.39198 * 119.01885 * 0.41647 * 7 6 5 9 9 C 1.38497 * 120.25565 * 359.66397 * 8 7 6 10 10 N 1.39949 * 119.91599 * 180.02562 * 9 8 7 11 11 C 1.46498 * 120.00416 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47246 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99913 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00064 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99934 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00077 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47306 * 90.00309 * 16 14 12 18 18 H 1.48499 * 109.47269 * 210.00460 * 16 14 12 19 19 H 1.48500 * 109.47160 * 330.00590 * 16 14 12 20 20 O 1.36245 * 111.21832 * 180.68202 * 7 6 5 21 21 C 1.43759 * 109.24212 * 341.07321 * 20 7 6 22 22 H 1.08999 * 110.89995 * 269.33010 * 21 20 7 23 23 C 1.52993 * 110.74848 * 146.05300 * 21 20 7 24 24 C 1.51680 * 132.03838 * 179.71808 * 6 5 4 25 25 H 1.08996 * 109.46822 * 300.00139 * 1 2 3 26 26 H 1.08998 * 109.46660 * 60.00111 * 1 2 3 27 27 H 1.08997 * 109.46915 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46822 * 239.99861 * 2 1 3 29 29 H 1.08995 * 109.46935 * 119.99446 * 2 1 3 30 30 H 1.08002 * 119.99153 * 359.94613 * 5 4 3 31 31 H 1.08000 * 119.86554 * 179.68407 * 8 7 6 32 32 H 0.97005 * 119.99565 * 179.97438 * 10 9 8 33 33 H 1.08998 * 109.47106 * 299.99685 * 11 10 9 34 34 H 1.08999 * 109.47275 * 59.99926 * 11 10 9 35 35 H 0.96996 * 119.99865 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.47466 * 306.62732 * 23 21 20 37 37 H 1.09000 * 109.47144 * 66.62679 * 23 21 20 38 38 H 1.08999 * 109.47315 * 186.62530 * 23 21 20 39 39 H 1.09002 * 110.93418 * 313.95563 * 24 6 5 40 40 H 1.08994 * 110.93625 * 77.59797 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3555 1.5257 -0.0005 5 6 4.2034 0.4297 -0.0005 6 6 5.5697 0.6145 -0.0082 7 6 6.1176 1.8909 -0.0148 8 6 5.2655 2.9915 -0.0048 9 6 3.8924 2.8110 0.0046 10 7 3.0423 3.9226 0.0141 11 6 3.6050 5.2752 0.0136 12 6 2.4862 6.2848 0.0242 13 1 1.4588 5.9521 0.0311 14 6 2.7743 7.6331 0.0262 15 7 4.0255 8.0382 0.0184 16 14 1.3875 8.8845 0.0402 17 1 1.0303 9.2119 1.4438 18 1 1.8271 10.1184 -0.6594 19 1 0.2026 8.3180 -0.6529 20 8 7.4790 1.8430 -0.0369 21 6 7.9144 0.5424 0.3941 22 1 8.0707 0.5224 1.4726 23 6 9.1879 0.1250 -0.3439 24 6 6.7272 -0.3657 -0.0047 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.7939 -0.5697 0.0008 31 1 5.6769 3.9901 -0.0046 32 1 2.0803 3.7975 0.0202 33 1 4.2256 5.4108 0.8993 34 1 4.2122 5.4158 -0.8806 35 1 4.2282 8.9867 0.0194 36 1 9.0281 0.2067 -1.4191 37 1 10.0096 0.7773 -0.0482 38 1 9.4333 -0.9063 -0.0904 39 1 6.5711 -1.1501 0.7359 40 1 6.8788 -0.7930 -0.9959 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581305909.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:34 Heat of formation + Delta-G solvation = -52.996554 kcal Electronic energy + Delta-G solvation = -21243.122837 eV Core-core repulsion = 18023.206392 eV Total energy + Delta-G solvation = -3219.916445 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.79520 -39.11845 -36.71458 -34.50891 -32.87077 -32.45398 -31.55038 -29.67422 -28.66991 -27.29883 -25.05682 -23.71186 -22.50436 -21.59747 -21.27195 -20.34117 -17.75557 -17.49732 -16.82802 -16.01828 -15.86086 -15.41705 -14.80244 -14.49787 -13.97563 -13.86866 -13.53586 -13.36170 -13.08167 -12.83798 -12.73055 -12.55301 -12.54741 -12.22330 -11.96025 -11.81930 -11.66032 -11.25660 -11.16136 -10.99152 -10.88564 -10.84154 -10.43134 -10.05316 -9.96924 -9.35205 -9.19428 -8.50036 -7.66730 -6.32961 -6.16494 -4.21426 1.86596 2.00611 3.26187 3.32229 3.35475 3.47142 3.56504 4.21506 4.29251 4.56364 4.68269 4.72155 4.98967 5.01133 5.06561 5.20366 5.20612 5.26119 5.33216 5.43329 5.51499 5.56757 5.63742 5.81829 5.83149 5.93520 6.01559 6.05160 6.13661 6.30228 6.40394 6.57428 6.83426 6.94900 7.18596 7.46874 7.54703 7.61344 7.83989 7.99737 8.32903 8.70893 8.95272 9.44541 10.94163 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013844 B = 0.004977 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.074763 B = 5624.626483 C = 7591.005621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.316 6.316 4 C 0.009 3.991 5 C -0.110 4.110 6 C -0.229 4.229 7 C 0.127 3.873 8 C -0.197 4.197 9 C 0.252 3.748 10 N -0.716 5.716 11 C 0.249 3.751 12 C -0.537 4.537 13 H 0.063 0.937 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.904 3.096 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.273 1.273 20 O -0.304 6.304 21 C 0.076 3.924 22 H 0.081 0.919 23 C -0.148 4.148 24 C -0.090 4.090 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.120 0.880 31 H 0.138 0.862 32 H 0.400 0.600 33 H 0.022 0.978 34 H 0.023 0.977 35 H 0.265 0.735 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.467 -18.973 0.365 19.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.231 6.231 4 C -0.039 4.039 5 C -0.129 4.129 6 C -0.233 4.233 7 C 0.082 3.918 8 C -0.222 4.222 9 C 0.141 3.859 10 N -0.339 5.339 11 C 0.128 3.872 12 C -0.576 4.576 13 H 0.081 0.919 14 C -0.140 4.140 15 N -0.527 5.527 16 Si 0.731 3.269 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 O -0.219 6.219 21 C 0.020 3.980 22 H 0.099 0.901 23 C -0.205 4.205 24 C -0.128 4.128 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.137 0.863 31 H 0.156 0.844 32 H 0.234 0.766 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.663 -18.235 0.300 18.431 hybrid contribution -0.933 0.322 0.066 0.989 sum 1.731 -17.913 0.367 18.000 Atomic orbital electron populations 1.21756 0.93310 1.02235 1.03558 1.22579 0.95341 0.82967 1.00586 1.86010 1.18666 1.27871 1.90589 1.18091 0.82282 0.92257 1.11269 1.19835 0.91665 0.97005 1.04440 1.19987 0.93656 0.93856 1.15813 1.19006 0.82425 0.93707 0.96710 1.19449 0.89451 0.98074 1.15217 1.16907 0.89596 0.85350 0.94056 1.45446 1.07523 1.04163 1.76769 1.19170 0.95073 0.76220 0.96775 1.21192 0.92849 0.90898 1.52635 0.91914 1.24923 0.95932 0.98391 0.94704 1.69951 1.17496 1.15874 1.49355 0.86411 0.81812 0.80476 0.78226 1.20469 1.21006 1.19737 1.86832 1.17932 1.34410 1.82694 1.23269 0.94825 0.81118 0.98820 0.90110 1.21861 0.95993 1.01406 1.01253 1.21612 0.91764 0.97213 1.02167 0.91591 0.91580 0.90929 0.92786 0.92799 0.86250 0.84449 0.76581 0.95973 0.95955 0.92483 0.91510 0.91543 0.90745 0.90332 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.13 16 2 C 0.06 0.74 5.47 37.16 0.20 0.94 16 3 O -0.32 -5.32 9.38 -20.03 -0.19 -5.51 16 4 C 0.01 0.16 6.71 -39.07 -0.26 -0.10 16 5 C -0.11 -1.74 9.03 -39.59 -0.36 -2.10 16 6 C -0.23 -3.70 6.27 -104.03 -0.65 -4.36 16 7 C 0.13 2.37 7.03 -38.98 -0.27 2.09 16 8 C -0.20 -4.10 9.33 -39.13 -0.36 -4.46 16 9 C 0.25 5.24 6.66 -83.66 -0.56 4.68 16 10 N -0.72 -16.20 5.72 -59.74 -0.34 -16.55 16 11 C 0.25 6.52 4.66 -5.20 -0.02 6.50 16 12 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 13 H 0.06 1.68 7.60 -52.49 -0.40 1.28 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 16 Si 0.90 21.23 29.54 -169.99 -5.02 16.20 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 O -0.30 -5.25 10.81 -20.52 -0.22 -5.47 16 21 C 0.08 0.95 4.26 -25.84 -0.11 0.84 16 22 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 23 C -0.15 -1.39 9.58 37.15 0.36 -1.04 16 24 C -0.09 -1.10 6.64 -26.51 -0.18 -1.28 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.60 7.67 -51.93 -0.40 0.20 16 29 H 0.05 0.59 7.67 -51.93 -0.40 0.19 16 30 H 0.12 1.53 6.32 -52.49 -0.33 1.20 16 31 H 0.14 3.04 6.69 -52.49 -0.35 2.69 16 32 H 0.40 8.74 7.68 -40.82 -0.31 8.43 16 33 H 0.02 0.62 7.94 -51.93 -0.41 0.21 16 34 H 0.02 0.63 7.94 -51.93 -0.41 0.22 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.88 7.92 -51.93 -0.41 0.46 16 LS Contribution 331.59 15.07 5.00 5.00 Total: -1.00 -30.58 331.59 -8.24 -38.81 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -5.94 Total: 5.71 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -2.25 Total: -12.94 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.39 Total: -41.80 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -0.41 Total: -10.98 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.58 -8.24 -38.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581305909.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.184 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds