Wall clock time and date at job start Mon Mar 30 2020 01:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42904 * 109.46703 * 2 1 4 4 C 1.36092 * 116.99625 * 180.02562 * 3 2 1 5 5 C 1.38563 * 120.19706 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.02370 * 179.65802 * 5 4 3 7 7 C 1.38901 * 120.93488 * 0.05749 * 6 5 4 8 8 C 1.39198 * 119.01885 * 0.41647 * 7 6 5 9 9 C 1.38497 * 120.25565 * 359.66397 * 8 7 6 10 10 N 1.39949 * 119.91599 * 180.02562 * 9 8 7 11 11 C 1.46498 * 120.00416 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47246 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99913 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00064 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99934 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00077 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47306 * 90.00309 * 16 14 12 18 18 H 1.48499 * 109.47269 * 210.00460 * 16 14 12 19 19 H 1.48500 * 109.47160 * 330.00590 * 16 14 12 20 20 O 1.36245 * 111.21832 * 180.68202 * 7 6 5 21 21 C 1.43759 * 109.24212 * 341.07321 * 20 7 6 22 22 H 1.08999 * 110.89995 * 269.33010 * 21 20 7 23 23 C 1.52993 * 110.74848 * 146.05300 * 21 20 7 24 24 C 1.51680 * 132.03838 * 179.71808 * 6 5 4 25 25 H 1.08996 * 109.46822 * 300.00139 * 1 2 3 26 26 H 1.08998 * 109.46660 * 60.00111 * 1 2 3 27 27 H 1.08997 * 109.46915 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46822 * 239.99861 * 2 1 3 29 29 H 1.08995 * 109.46935 * 119.99446 * 2 1 3 30 30 H 1.08002 * 119.99153 * 359.94613 * 5 4 3 31 31 H 1.08000 * 119.86554 * 179.68407 * 8 7 6 32 32 H 0.97005 * 119.99565 * 179.97438 * 10 9 8 33 33 H 1.08998 * 109.47106 * 299.99685 * 11 10 9 34 34 H 1.08999 * 109.47275 * 59.99926 * 11 10 9 35 35 H 0.96996 * 119.99865 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.47466 * 306.62732 * 23 21 20 37 37 H 1.09000 * 109.47144 * 66.62679 * 23 21 20 38 38 H 1.08999 * 109.47315 * 186.62530 * 23 21 20 39 39 H 1.09002 * 110.93418 * 313.95563 * 24 6 5 40 40 H 1.08994 * 110.93625 * 77.59797 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3555 1.5257 -0.0005 5 6 4.2034 0.4297 -0.0005 6 6 5.5697 0.6145 -0.0082 7 6 6.1176 1.8909 -0.0148 8 6 5.2655 2.9915 -0.0048 9 6 3.8924 2.8110 0.0046 10 7 3.0423 3.9226 0.0141 11 6 3.6050 5.2752 0.0136 12 6 2.4862 6.2848 0.0242 13 1 1.4588 5.9521 0.0311 14 6 2.7743 7.6331 0.0262 15 7 4.0255 8.0382 0.0184 16 14 1.3875 8.8845 0.0402 17 1 1.0303 9.2119 1.4438 18 1 1.8271 10.1184 -0.6594 19 1 0.2026 8.3180 -0.6529 20 8 7.4790 1.8430 -0.0369 21 6 7.9144 0.5424 0.3941 22 1 8.0707 0.5224 1.4726 23 6 9.1879 0.1250 -0.3439 24 6 6.7272 -0.3657 -0.0047 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.7939 -0.5697 0.0008 31 1 5.6769 3.9901 -0.0046 32 1 2.0803 3.7975 0.0202 33 1 4.2256 5.4108 0.8993 34 1 4.2122 5.4158 -0.8806 35 1 4.2282 8.9867 0.0194 36 1 9.0281 0.2067 -1.4191 37 1 10.0096 0.7773 -0.0482 38 1 9.4333 -0.9063 -0.0904 39 1 6.5711 -1.1501 0.7359 40 1 6.8788 -0.7930 -0.9959 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581305909.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:33 Heat of formation + Delta-G solvation = -72.555424 kcal Electronic energy + Delta-G solvation = -21243.970973 eV Core-core repulsion = 18023.206392 eV Total energy + Delta-G solvation = -3220.764581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.08650 -40.39325 -38.17242 -36.16452 -34.60727 -33.76155 -32.55491 -31.08534 -30.00010 -28.98847 -26.54147 -24.98408 -24.13017 -22.77662 -22.45330 -21.80014 -19.43962 -18.74969 -18.15706 -17.80098 -16.97632 -16.80362 -16.43342 -15.91590 -15.56474 -15.25359 -15.01944 -14.85406 -14.30051 -14.06144 -13.94795 -13.85401 -13.73516 -13.36488 -13.09581 -13.02782 -12.90744 -12.79699 -12.68850 -12.41224 -12.20773 -12.09775 -11.90202 -11.51375 -11.45831 -11.32797 -10.77224 -10.41595 -9.16640 -8.31786 -7.89808 -6.46460 0.42790 0.57617 1.39409 1.41778 1.53177 2.25532 2.32047 2.38445 2.78128 2.95755 3.03027 3.54082 3.70762 3.94519 4.09656 4.14811 4.20746 4.23417 4.37954 4.43702 4.57856 4.63021 4.72666 4.83739 4.84050 4.91345 4.97213 5.00941 5.05282 5.14325 5.21450 5.25390 5.27470 5.31574 5.44265 5.52506 5.58837 5.85468 6.25270 6.32246 6.56791 6.77576 7.11085 7.27018 8.80369 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013844 B = 0.004977 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.074763 B = 5624.626483 C = 7591.005621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.337 6.337 4 C 0.015 3.985 5 C -0.102 4.102 6 C -0.212 4.212 7 C 0.107 3.893 8 C -0.220 4.220 9 C 0.216 3.784 10 N -0.725 5.725 11 C 0.273 3.727 12 C -0.558 4.558 13 H 0.070 0.930 14 C 0.009 3.991 15 N -0.927 5.927 16 Si 0.981 3.019 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.262 1.262 20 O -0.330 6.330 21 C 0.063 3.937 22 H 0.091 0.909 23 C -0.143 4.143 24 C -0.083 4.083 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.162 0.838 31 H 0.102 0.898 32 H 0.401 0.599 33 H -0.010 1.010 34 H -0.011 1.011 35 H 0.270 0.730 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 -22.292 0.481 22.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 O -0.252 6.252 4 C -0.033 4.033 5 C -0.121 4.121 6 C -0.215 4.215 7 C 0.061 3.939 8 C -0.245 4.245 9 C 0.109 3.891 10 N -0.352 5.352 11 C 0.150 3.850 12 C -0.596 4.596 13 H 0.088 0.912 14 C -0.191 4.191 15 N -0.566 5.566 16 Si 0.804 3.196 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.186 1.186 20 O -0.245 6.245 21 C 0.007 3.993 22 H 0.109 0.891 23 C -0.199 4.199 24 C -0.120 4.120 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.123 0.877 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.180 0.820 31 H 0.120 0.880 32 H 0.236 0.764 33 H 0.008 0.992 34 H 0.007 0.993 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.900 -21.627 0.418 21.714 hybrid contribution -0.574 1.155 0.040 1.290 sum 1.327 -20.472 0.457 20.520 Atomic orbital electron populations 1.21798 0.91885 1.04090 1.02775 1.23002 0.96558 0.80933 1.02114 1.86014 1.17693 1.31152 1.90376 1.18142 0.83548 0.91551 1.10041 1.20239 0.91230 0.98066 1.02607 1.20581 0.94894 0.93888 1.12149 1.19110 0.83270 0.94110 0.97364 1.19382 0.90461 0.97605 1.17044 1.17129 0.89417 0.86151 0.96364 1.45013 1.07566 1.03282 1.79349 1.18575 0.94190 0.78525 0.93690 1.21554 0.93342 0.91736 1.52927 0.91198 1.25962 0.98739 1.00593 0.93790 1.70096 1.19929 1.16566 1.50008 0.85212 0.78348 0.77358 0.78657 1.19497 1.20371 1.18594 1.86819 1.17165 1.37621 1.82902 1.23737 0.96369 0.79138 1.00015 0.89099 1.21896 0.94254 1.03316 1.00478 1.21769 0.88958 0.96781 1.04451 0.92375 0.92413 0.87684 0.91152 0.91068 0.82025 0.87987 0.76386 0.99236 0.99302 0.92146 0.92050 0.91685 0.87270 0.86811 0.88242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 10.28 71.99 0.74 -1.87 16 2 C 0.05 1.03 5.47 71.99 0.39 1.43 16 3 O -0.34 -11.05 9.38 -94.60 -0.89 -11.94 16 4 C 0.02 0.56 6.71 22.60 0.15 0.71 16 5 C -0.10 -2.96 9.03 22.26 0.20 -2.76 16 6 C -0.21 -6.38 6.27 -19.48 -0.12 -6.50 16 7 C 0.11 4.09 7.03 22.66 0.16 4.25 16 8 C -0.22 -9.94 9.33 22.56 0.21 -9.72 16 9 C 0.22 9.56 6.66 38.16 0.25 9.81 16 10 N -0.73 -35.33 5.72 -342.93 -1.96 -37.29 16 11 C 0.27 15.60 4.66 85.63 0.40 15.99 16 12 C -0.56 -32.41 9.28 25.60 0.24 -32.17 16 13 H 0.07 3.86 7.60 -2.91 -0.02 3.84 16 14 C 0.01 0.51 5.46 84.65 0.46 0.97 16 15 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 16 Si 0.98 44.26 29.54 68.60 2.03 46.28 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 20 O -0.33 -11.53 10.81 -96.36 -1.04 -12.57 16 21 C 0.06 1.42 4.26 31.17 0.13 1.55 16 22 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 23 C -0.14 -2.28 9.58 71.98 0.69 -1.59 16 24 C -0.08 -1.67 6.64 30.74 0.20 -1.46 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.28 7.67 -2.39 -0.02 1.26 16 29 H 0.07 1.28 7.67 -2.39 -0.02 1.27 16 30 H 0.16 3.31 6.32 -2.91 -0.02 3.29 16 31 H 0.10 5.17 6.69 -2.91 -0.02 5.15 16 32 H 0.40 18.63 7.68 -92.70 -0.71 17.92 16 33 H -0.01 -0.63 7.94 -2.39 -0.02 -0.65 16 34 H -0.01 -0.67 7.94 -2.39 -0.02 -0.69 16 35 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.10 1.70 7.92 -2.39 -0.02 1.68 16 Total: -1.00 -71.78 331.59 2.86 -68.92 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.33 Total: 24.34 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 4.11 Total: -21.36 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -1.68 Total: -93.68 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -1.93 Total: -24.51 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -71.78 2.86 -68.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581305909.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.636 kcal (2) G-P(sol) polarization free energy of solvation -71.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds