Wall clock time and date at job start Mon Mar 30 2020 01:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35971 * 117.00036 * 2 1 4 4 C 1.38551 * 120.08315 * 0.02562 * 3 2 1 5 5 C 1.38248 * 120.01175 * 180.02562 * 4 3 2 6 6 C 1.38272 * 120.18082 * 359.97438 * 5 4 3 7 7 C 1.38195 * 120.16392 * 359.97438 * 6 5 4 8 8 C 1.38716 * 119.98776 * 0.02562 * 7 6 5 9 9 N 1.40123 * 120.09299 * 179.97438 * 8 7 6 10 10 C 1.34781 * 119.99977 * 24.79350 * 9 8 7 11 11 O 1.21293 * 119.99545 * 5.53656 * 10 9 8 12 12 C 1.50696 * 119.99981 * 185.53224 * 10 9 8 13 13 C 1.53003 * 109.47094 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47215 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.47215 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47487 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99663 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00459 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99746 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00430 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47040 * 59.99688 * 20 18 16 22 22 H 1.48493 * 109.47368 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47174 * 299.99977 * 20 18 16 24 24 H 1.09002 * 109.46718 * 299.99498 * 1 2 3 25 25 H 1.08992 * 109.47130 * 59.99670 * 1 2 3 26 26 H 1.08998 * 109.47200 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.99082 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.90468 * 179.97438 * 5 4 3 29 29 H 1.08006 * 119.91710 * 179.97438 * 6 5 4 30 30 H 1.08005 * 120.00458 * 179.74519 * 7 6 5 31 31 H 0.96999 * 120.00412 * 204.79873 * 9 8 7 32 32 H 1.09000 * 109.47629 * 299.99991 * 12 10 9 33 33 H 1.09007 * 109.47148 * 60.00755 * 12 10 9 34 34 H 1.09004 * 109.47089 * 300.00478 * 13 12 10 35 35 H 1.08998 * 109.46922 * 59.99969 * 13 12 10 36 36 H 1.09000 * 109.47286 * 299.99572 * 14 13 12 37 37 H 1.08998 * 109.47483 * 59.99967 * 14 13 12 38 38 H 1.09004 * 109.47089 * 300.00133 * 15 14 13 39 39 H 1.08998 * 109.46922 * 59.99623 * 15 14 13 40 40 H 0.96994 * 120.00310 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2934 2.3746 0.0005 5 6 1.9226 3.6056 0.0000 6 6 3.3033 3.6806 -0.0005 7 6 4.0614 2.5252 0.0000 8 6 3.4373 1.2864 0.0005 9 7 4.2039 0.1134 0.0005 10 6 5.4598 0.1292 0.4895 11 8 5.8912 1.1307 1.0206 12 6 6.3278 -1.0975 0.3766 13 6 7.6937 -0.8155 1.0057 14 6 8.5752 -2.0606 0.8904 15 6 9.9408 -1.7788 1.5201 16 6 10.8094 -3.0050 1.4060 17 1 10.4255 -3.8964 0.9322 18 6 12.0936 -2.9894 1.9075 19 7 12.5608 -1.9041 2.4849 20 14 13.1699 -4.5096 1.7668 21 1 13.3482 -4.8589 0.3345 22 1 14.4954 -4.2360 2.3778 23 1 12.5219 -5.6422 2.4755 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2148 2.3195 0.0014 28 1 1.3340 4.5111 0.0000 29 1 3.7904 4.6446 -0.0014 30 1 5.1397 2.5868 -0.0046 31 1 3.8309 -0.7099 -0.3515 32 1 5.8526 -1.9283 0.8982 33 1 6.4578 -1.3551 -0.6746 34 1 8.1692 0.0155 0.4844 35 1 7.5634 -0.5581 2.0568 36 1 8.0999 -2.8917 1.4114 37 1 8.7054 -2.3176 -0.1608 38 1 10.4164 -0.9475 0.9995 39 1 9.8102 -1.5221 2.5713 40 1 13.4644 -1.8929 2.8374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588270662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:38 Heat of formation + Delta-G solvation = -88.568455 kcal Electronic energy + Delta-G solvation = -20311.958620 eV Core-core repulsion = 17090.499662 eV Total energy + Delta-G solvation = -3221.458958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.83755 -40.40804 -38.24179 -36.68738 -35.81548 -34.62724 -31.93698 -31.11452 -30.41418 -28.11792 -27.41323 -24.76868 -23.45133 -23.02063 -21.72688 -21.19435 -19.43734 -18.43855 -18.19808 -17.93547 -17.11833 -16.64805 -16.57549 -16.46426 -15.84734 -15.60823 -15.34531 -14.78673 -14.54591 -14.45303 -13.97949 -13.60352 -13.59702 -13.30635 -13.06975 -12.78881 -12.60600 -12.37375 -12.20504 -12.15454 -12.12558 -12.01419 -11.58953 -11.36213 -11.33602 -11.13495 -10.70681 -10.53874 -9.59573 -8.79907 -8.18144 -6.30376 0.24153 0.40452 1.40560 1.44680 1.52505 1.58085 1.99264 2.31745 2.42542 2.82044 3.14460 3.66976 3.88917 3.99434 4.02091 4.13753 4.27010 4.40382 4.43799 4.46700 4.53644 4.66185 4.67386 4.78087 4.80441 4.82676 4.87792 5.12913 5.18587 5.29738 5.33638 5.37107 5.48029 5.57034 5.59280 5.78845 5.81725 5.88755 6.25866 6.37356 6.42877 6.88041 7.11131 7.39175 8.93989 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038979 B = 0.002569 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.170920 B =10897.162791 C =11509.034358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.090 3.910 4 C -0.188 4.188 5 C -0.098 4.098 6 C -0.144 4.144 7 C -0.122 4.122 8 C 0.097 3.903 9 N -0.656 5.656 10 C 0.510 3.490 11 O -0.561 6.561 12 C -0.125 4.125 13 C -0.096 4.096 14 C -0.096 4.096 15 C 0.019 3.981 16 C -0.543 4.543 17 H 0.066 0.934 18 C -0.007 4.007 19 N -0.938 5.938 20 Si 0.970 3.030 21 H -0.264 1.264 22 H -0.285 1.285 23 H -0.264 1.264 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.118 0.882 27 H 0.160 0.840 28 H 0.156 0.844 29 H 0.140 0.860 30 H 0.127 0.873 31 H 0.426 0.574 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.061 0.939 37 H 0.062 0.938 38 H -0.015 1.015 39 H -0.016 1.016 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.580 5.792 -8.536 31.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C 0.043 3.957 4 C -0.207 4.207 5 C -0.117 4.117 6 C -0.162 4.162 7 C -0.142 4.142 8 C 0.002 3.998 9 N -0.301 5.301 10 C 0.300 3.700 11 O -0.440 6.440 12 C -0.164 4.164 13 C -0.134 4.134 14 C -0.133 4.133 15 C -0.018 4.018 16 C -0.581 4.581 17 H 0.084 0.916 18 C -0.204 4.204 19 N -0.579 5.579 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.211 1.211 23 H -0.189 1.189 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.136 0.864 27 H 0.178 0.822 28 H 0.174 0.826 29 H 0.158 0.842 30 H 0.145 0.855 31 H 0.265 0.735 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.003 0.997 39 H 0.003 0.997 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -29.010 6.305 -8.093 30.771 hybrid contribution 0.750 -0.550 0.156 0.943 sum -28.260 5.755 -7.937 29.912 Atomic orbital electron populations 1.23351 0.76027 1.05639 1.02377 1.85983 1.23730 1.25991 1.89097 1.18784 0.89853 0.86188 1.00911 1.21421 1.01246 0.91181 1.06818 1.21299 0.94125 0.98266 0.97980 1.21255 0.94626 0.98117 1.02247 1.21320 1.01269 0.91185 1.00465 1.17417 0.87967 0.87510 1.06884 1.43379 1.13744 1.11797 1.61186 1.21449 0.81763 0.90691 0.76058 1.90662 1.73668 1.36099 1.43544 1.21690 0.94099 0.95157 1.05491 1.21256 0.94056 0.97986 1.00111 1.21445 0.94743 0.96556 1.00584 1.19052 0.93197 0.95376 0.94204 1.21733 0.98796 0.99804 1.37725 0.91572 1.26097 0.99876 0.99656 0.94789 1.70123 1.17435 1.30088 1.40226 0.85434 0.77290 0.78999 0.78925 1.18899 1.21079 1.18910 0.91827 0.91263 0.86383 0.82208 0.82621 0.84236 0.85488 0.73545 0.86075 0.85882 0.93522 0.93699 0.92047 0.91965 0.99654 0.99714 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.28 16 2 O -0.33 -5.69 9.91 -93.23 -0.92 -6.61 16 3 C 0.09 1.82 6.70 22.60 0.15 1.97 16 4 C -0.19 -2.93 9.04 22.35 0.20 -2.73 16 5 C -0.10 -1.55 10.04 22.28 0.22 -1.33 16 6 C -0.14 -2.98 10.04 22.27 0.22 -2.76 16 7 C -0.12 -3.29 8.71 22.37 0.19 -3.10 16 8 C 0.10 2.45 6.45 38.19 0.25 2.70 16 9 N -0.66 -15.46 5.29 -303.13 -1.60 -17.06 16 10 C 0.51 14.76 7.64 87.66 0.67 15.43 16 11 O -0.56 -21.11 13.16 -3.07 -0.04 -21.15 16 12 C -0.13 -3.17 5.70 29.85 0.17 -3.00 16 13 C -0.10 -3.48 4.50 30.59 0.14 -3.35 16 14 C -0.10 -3.93 5.15 30.59 0.16 -3.78 16 15 C 0.02 1.04 4.97 29.85 0.15 1.19 16 16 C -0.54 -31.71 9.11 25.60 0.23 -31.48 16 17 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 18 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 19 N -0.94 -59.54 13.29 21.45 0.28 -59.25 16 20 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 21 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 24 H 0.06 0.42 7.66 -2.39 -0.02 0.40 16 25 H 0.07 0.38 7.66 -2.39 -0.02 0.36 16 26 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.16 1.43 6.30 -2.91 -0.02 1.41 16 28 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 29 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 30 H 0.13 4.06 5.80 -2.91 -0.02 4.04 16 31 H 0.43 7.44 8.35 -92.71 -0.77 6.67 16 32 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.12 2.47 8.14 -2.38 -0.02 2.45 16 34 H 0.05 1.84 8.10 -2.38 -0.02 1.82 16 35 H 0.04 1.78 8.10 -2.39 -0.02 1.77 16 36 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H -0.01 -0.91 8.14 -2.38 -0.02 -0.92 16 39 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 40 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -77.58 336.95 4.34 -73.25 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.26 Total: 12.60 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 4.33 Total: -28.89 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -1.32 Total: -76.31 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.96 Total: -27.76 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -77.58 4.34 -73.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588270662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.322 kcal (2) G-P(sol) polarization free energy of solvation -77.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds