Wall clock time and date at job start Mon Mar 30 2020 01:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46879 * 2 1 4 4 C 1.35903 * 116.99786 * 179.97438 * 3 2 1 5 5 C 1.38732 * 120.05283 * 179.97438 * 4 3 2 6 6 C 1.38146 * 119.94456 * 180.02562 * 5 4 3 7 7 C 1.38273 * 120.05218 * 0.02905 * 6 5 4 8 8 C 1.50699 * 119.93996 * 179.97438 * 7 6 5 9 9 C 1.52990 * 109.47246 * 90.00212 * 8 7 6 10 10 H 1.09002 * 109.47337 * 304.99815 * 9 8 7 11 11 C 1.53007 * 109.47358 * 64.99488 * 9 8 7 12 12 C 1.50703 * 109.47398 * 184.99730 * 9 8 7 13 13 O 1.21293 * 119.99482 * 359.97438 * 12 9 8 14 14 N 1.34777 * 120.00290 * 180.02562 * 12 9 8 15 15 C 1.37092 * 119.99729 * 180.27555 * 14 12 9 16 16 H 1.08002 * 120.00496 * 359.72414 * 15 14 12 17 17 C 1.38958 * 120.00096 * 179.72242 * 15 14 12 18 18 N 1.31406 * 120.00295 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99484 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47210 * 90.00351 * 19 17 15 21 21 H 1.48506 * 109.47251 * 210.00025 * 19 17 15 22 22 H 1.48504 * 109.47424 * 330.00119 * 19 17 15 23 23 C 1.38265 * 120.11376 * 0.24834 * 7 6 5 24 24 C 1.38146 * 120.05213 * 359.45261 * 23 7 6 25 25 H 1.09000 * 109.47404 * 299.99298 * 1 2 3 26 26 H 1.08995 * 109.47448 * 59.99918 * 1 2 3 27 27 H 1.09003 * 109.47247 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46799 * 239.99981 * 2 1 3 29 29 H 1.08995 * 109.47448 * 120.00082 * 2 1 3 30 30 H 1.08004 * 120.03158 * 0.02562 * 5 4 3 31 31 H 1.07996 * 119.97807 * 180.02562 * 6 5 4 32 32 H 1.08997 * 109.47249 * 329.99061 * 8 7 6 33 33 H 1.09002 * 109.46620 * 210.00121 * 8 7 6 34 34 H 1.09003 * 109.46582 * 60.00448 * 11 9 8 35 35 H 1.09001 * 109.46852 * 180.02562 * 11 9 8 36 36 H 1.08993 * 109.46731 * 300.00313 * 11 9 8 37 37 H 0.97001 * 119.99727 * 359.97438 * 14 12 9 38 38 H 0.97004 * 119.99848 * 179.97438 * 18 17 15 39 39 H 1.07991 * 119.97275 * 179.70329 * 23 7 6 40 40 H 1.07999 * 120.02664 * 180.24951 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 3.8850 2.8069 0.0000 6 6 5.2549 2.9853 0.0001 7 6 6.0961 1.8879 0.0000 8 6 7.5901 2.0855 -0.0006 9 6 8.0962 2.1525 1.4416 10 1 7.5552 2.9302 1.9808 11 6 7.8665 0.8035 2.1261 12 6 9.5690 2.4721 1.4429 13 8 10.1561 2.6302 0.3933 14 7 10.2339 2.5813 2.6101 15 6 11.5724 2.8776 2.6113 16 1 12.0951 3.0192 1.6768 17 6 12.2568 2.9959 3.8148 18 7 13.5397 3.2804 3.8160 19 14 11.3527 2.7518 5.4311 20 1 11.4151 1.3205 5.8220 21 1 11.9903 3.5810 6.4852 22 1 9.9337 3.1598 5.2712 23 6 5.5689 0.6097 -0.0053 24 6 4.1998 0.4260 0.0009 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.2283 3.6643 -0.0004 31 1 5.6692 3.9826 0.0001 32 1 7.8335 3.0152 -0.5148 33 1 8.0667 1.2506 -0.5145 34 1 8.4076 0.0258 1.5870 35 1 8.2267 0.8515 3.1537 36 1 6.8013 0.5724 2.1251 37 1 9.7644 2.4545 3.4494 38 1 14.0173 3.3633 4.6563 39 1 6.2281 -0.2457 -0.0102 40 1 3.7885 -0.5726 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591069039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:20 Heat of formation + Delta-G solvation = -66.708701 kcal Electronic energy + Delta-G solvation = -20751.908753 eV Core-core repulsion = 17531.397705 eV Total energy + Delta-G solvation = -3220.511048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.31609 -38.87971 -37.74128 -34.41873 -33.81572 -32.12605 -31.60814 -31.01694 -29.75459 -26.20391 -25.21499 -24.27028 -22.54223 -22.09224 -20.66176 -19.09007 -18.40347 -18.07548 -16.35055 -16.21413 -16.05263 -15.03977 -14.95541 -14.69262 -14.15216 -14.00959 -13.63925 -13.54775 -13.46671 -12.99780 -12.90540 -12.73966 -12.31626 -12.22649 -11.98072 -11.85144 -11.79189 -11.20905 -11.13500 -11.06013 -10.85340 -10.63738 -10.53930 -10.52348 -9.95216 -9.56097 -9.02980 -8.46696 -8.16567 -8.05675 -6.30323 -3.81251 1.30752 1.39818 3.00320 3.04109 3.07883 3.15874 3.71336 3.77408 4.11233 4.57546 4.58194 4.60900 4.77790 4.84043 4.90871 5.13665 5.14771 5.18980 5.28801 5.34558 5.40143 5.42205 5.52204 5.56769 5.64892 5.69797 5.89721 5.99094 6.08541 6.10239 6.20932 6.26701 6.36910 6.47123 6.54298 6.76471 6.78127 7.30291 7.58574 8.16719 8.60634 8.96058 9.44741 9.85021 10.82866 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033900 B = 0.003209 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.769390 B = 8724.193909 C = 9100.250803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.320 6.320 4 C 0.117 3.883 5 C -0.150 4.150 6 C -0.078 4.078 7 C -0.105 4.105 8 C -0.055 4.055 9 C -0.099 4.099 10 H 0.083 0.917 11 C -0.145 4.145 12 C 0.455 3.545 13 O -0.579 6.579 14 N -0.588 5.588 15 C -0.305 4.305 16 H 0.119 0.881 17 C 0.041 3.959 18 N -0.882 5.882 19 Si 0.877 3.123 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.269 1.269 23 C -0.076 4.076 24 C -0.208 4.208 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.371 0.629 38 H 0.273 0.727 39 H 0.125 0.875 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.419 -6.855 -3.993 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.234 6.234 4 C 0.072 3.928 5 C -0.169 4.169 6 C -0.096 4.096 7 C -0.106 4.106 8 C -0.092 4.092 9 C -0.121 4.121 10 H 0.101 0.899 11 C -0.203 4.203 12 C 0.241 3.759 13 O -0.462 6.462 14 N -0.226 5.226 15 C -0.434 4.434 16 H 0.137 0.863 17 C -0.161 4.161 18 N -0.522 5.522 19 Si 0.703 3.297 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.194 1.194 23 C -0.094 4.094 24 C -0.227 4.227 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.204 0.796 38 H 0.084 0.916 39 H 0.143 0.857 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -23.962 -6.570 -4.569 25.263 hybrid contribution -0.451 -0.407 1.498 1.616 sum -24.413 -6.976 -3.071 25.575 Atomic orbital electron populations 1.21772 0.92886 1.02769 1.03476 1.22741 0.95720 0.82236 1.01358 1.86046 1.19360 1.29031 1.88986 1.18958 0.81979 0.94254 0.97613 1.20398 0.95198 0.94643 1.06671 1.20947 0.91903 0.99103 0.97614 1.19982 0.96311 0.92846 1.01427 1.20309 0.89007 1.04097 0.95834 1.21146 0.95013 0.98818 0.97110 0.89899 1.21860 1.01637 0.96423 1.00334 1.19790 0.88088 0.83665 0.84338 1.90549 1.69493 1.55001 1.31149 1.42243 1.10145 1.63855 1.06375 1.19460 0.82503 1.44834 0.96625 0.86293 1.25041 0.95585 0.97570 0.97954 1.69621 1.07548 1.47523 1.27460 0.86707 0.79748 0.79110 0.84101 1.19575 1.20139 1.19416 1.20907 0.94005 0.97067 0.97401 1.21189 0.94375 0.97757 1.09330 0.91553 0.91566 0.90456 0.92142 0.92112 0.85489 0.85198 0.90136 0.90499 0.92135 0.92635 0.92063 0.79610 0.91634 0.85676 0.85845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.05 0.42 5.46 37.16 0.20 0.62 16 3 O -0.32 -3.54 10.14 -19.43 -0.20 -3.73 16 4 C 0.12 1.38 6.69 -39.22 -0.26 1.12 16 5 C -0.15 -1.78 9.99 -39.43 -0.39 -2.17 16 6 C -0.08 -0.95 9.69 -39.60 -0.38 -1.34 16 7 C -0.11 -1.38 4.71 -104.60 -0.49 -1.87 16 8 C -0.05 -0.84 4.18 -27.89 -0.12 -0.96 16 9 C -0.10 -1.66 2.71 -91.77 -0.25 -1.91 16 10 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 11 C -0.14 -2.10 8.67 37.16 0.32 -1.78 16 12 C 0.45 10.39 7.11 -10.98 -0.08 10.31 16 13 O -0.58 -15.52 15.50 5.55 0.09 -15.43 16 14 N -0.59 -14.21 4.98 -10.96 -0.05 -14.26 16 15 C -0.31 -8.72 10.16 -14.93 -0.15 -8.87 16 16 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 17 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 18 N -0.88 -25.91 13.96 55.50 0.77 -25.14 16 19 Si 0.88 19.59 27.74 -169.99 -4.71 14.88 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 23 C -0.08 -0.90 7.97 -39.61 -0.32 -1.21 16 24 C -0.21 -2.29 9.04 -39.43 -0.36 -2.65 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 29 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 30 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 31 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.08 1.31 7.90 -51.93 -0.41 0.90 16 33 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.80 7.56 -51.93 -0.39 0.41 16 36 H 0.06 0.76 6.28 -51.93 -0.33 0.44 16 37 H 0.37 7.97 5.18 -40.82 -0.21 7.76 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.13 1.33 8.05 -52.49 -0.42 0.91 16 40 H 0.12 1.09 6.30 -52.49 -0.33 0.76 16 LS Contribution 332.40 15.07 5.01 5.01 Total: -1.00 -32.73 332.40 -6.91 -39.64 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -5.82 Total: 9.20 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -1.99 Total: -10.15 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.72 Total: -39.40 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.11 Total: -19.17 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.71 Total: 14.88 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.73 -6.91 -39.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591069039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.073 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds