Wall clock time and date at job start Mon Mar 30 2020 01:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46879 * 2 1 4 4 C 1.35903 * 116.99786 * 179.97438 * 3 2 1 5 5 C 1.38732 * 120.05283 * 179.97438 * 4 3 2 6 6 C 1.38146 * 119.94456 * 180.02562 * 5 4 3 7 7 C 1.38273 * 120.05218 * 0.02905 * 6 5 4 8 8 C 1.50699 * 119.93996 * 179.97438 * 7 6 5 9 9 C 1.52990 * 109.47246 * 90.00212 * 8 7 6 10 10 H 1.09002 * 109.47337 * 304.99815 * 9 8 7 11 11 C 1.53007 * 109.47358 * 64.99488 * 9 8 7 12 12 C 1.50703 * 109.47398 * 184.99730 * 9 8 7 13 13 O 1.21293 * 119.99482 * 359.97438 * 12 9 8 14 14 N 1.34777 * 120.00290 * 180.02562 * 12 9 8 15 15 C 1.37092 * 119.99729 * 180.27555 * 14 12 9 16 16 H 1.08002 * 120.00496 * 359.72414 * 15 14 12 17 17 C 1.38958 * 120.00096 * 179.72242 * 15 14 12 18 18 N 1.31406 * 120.00295 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99484 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47210 * 90.00351 * 19 17 15 21 21 H 1.48506 * 109.47251 * 210.00025 * 19 17 15 22 22 H 1.48504 * 109.47424 * 330.00119 * 19 17 15 23 23 C 1.38265 * 120.11376 * 0.24834 * 7 6 5 24 24 C 1.38146 * 120.05213 * 359.45261 * 23 7 6 25 25 H 1.09000 * 109.47404 * 299.99298 * 1 2 3 26 26 H 1.08995 * 109.47448 * 59.99918 * 1 2 3 27 27 H 1.09003 * 109.47247 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46799 * 239.99981 * 2 1 3 29 29 H 1.08995 * 109.47448 * 120.00082 * 2 1 3 30 30 H 1.08004 * 120.03158 * 0.02562 * 5 4 3 31 31 H 1.07996 * 119.97807 * 180.02562 * 6 5 4 32 32 H 1.08997 * 109.47249 * 329.99061 * 8 7 6 33 33 H 1.09002 * 109.46620 * 210.00121 * 8 7 6 34 34 H 1.09003 * 109.46582 * 60.00448 * 11 9 8 35 35 H 1.09001 * 109.46852 * 180.02562 * 11 9 8 36 36 H 1.08993 * 109.46731 * 300.00313 * 11 9 8 37 37 H 0.97001 * 119.99727 * 359.97438 * 14 12 9 38 38 H 0.97004 * 119.99848 * 179.97438 * 18 17 15 39 39 H 1.07991 * 119.97275 * 179.70329 * 23 7 6 40 40 H 1.07999 * 120.02664 * 180.24951 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 3.8850 2.8069 0.0000 6 6 5.2549 2.9853 0.0001 7 6 6.0961 1.8879 0.0000 8 6 7.5901 2.0855 -0.0006 9 6 8.0962 2.1525 1.4416 10 1 7.5552 2.9302 1.9808 11 6 7.8665 0.8035 2.1261 12 6 9.5690 2.4721 1.4429 13 8 10.1561 2.6302 0.3933 14 7 10.2339 2.5813 2.6101 15 6 11.5724 2.8776 2.6113 16 1 12.0951 3.0192 1.6768 17 6 12.2568 2.9959 3.8148 18 7 13.5397 3.2804 3.8160 19 14 11.3527 2.7518 5.4311 20 1 11.4151 1.3205 5.8220 21 1 11.9903 3.5810 6.4852 22 1 9.9337 3.1598 5.2712 23 6 5.5689 0.6097 -0.0053 24 6 4.1998 0.4260 0.0009 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.2283 3.6643 -0.0004 31 1 5.6692 3.9826 0.0001 32 1 7.8335 3.0152 -0.5148 33 1 8.0667 1.2506 -0.5145 34 1 8.4076 0.0258 1.5870 35 1 8.2267 0.8515 3.1537 36 1 6.8013 0.5724 2.1251 37 1 9.7644 2.4545 3.4494 38 1 14.0173 3.3633 4.6563 39 1 6.2281 -0.2457 -0.0102 40 1 3.7885 -0.5726 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591069039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:20 Heat of formation + Delta-G solvation = -87.587277 kcal Electronic energy + Delta-G solvation = -20752.814116 eV Core-core repulsion = 17531.397705 eV Total energy + Delta-G solvation = -3221.416411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.22032 -40.50135 -38.78844 -36.14524 -35.42464 -33.75100 -32.71126 -31.88124 -30.78069 -27.29569 -27.15542 -25.01422 -23.88224 -22.91306 -21.76806 -21.00923 -19.91453 -19.17077 -17.85446 -17.00449 -16.92488 -16.90220 -16.12763 -15.96594 -15.66189 -15.22663 -14.79792 -14.52434 -14.48179 -14.31539 -14.26747 -14.02410 -13.60468 -13.32908 -13.00559 -12.97531 -12.80496 -12.55478 -12.44775 -12.21994 -12.07110 -11.95521 -11.91208 -11.57609 -11.53120 -11.47509 -10.36731 -10.25857 -9.89356 -8.98519 -8.42804 -6.03366 0.43258 0.47483 1.28915 1.33446 1.42532 1.94254 2.21296 2.30908 2.75485 2.98495 3.13838 3.85493 3.88891 3.99576 4.02909 4.08862 4.09242 4.23226 4.29399 4.39643 4.45787 4.51011 4.60103 4.65262 4.85802 4.91900 4.92451 4.96634 4.99687 5.15995 5.22151 5.28842 5.31660 5.37954 5.45223 5.54525 5.78845 5.87034 5.94489 6.51483 6.56608 6.86144 7.38281 7.94001 8.74801 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033900 B = 0.003209 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.769390 B = 8724.193909 C = 9100.250803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.334 6.334 4 C 0.113 3.887 5 C -0.159 4.159 6 C -0.082 4.082 7 C -0.117 4.117 8 C -0.047 4.047 9 C -0.088 4.088 10 H 0.104 0.896 11 C -0.141 4.141 12 C 0.454 3.546 13 O -0.626 6.626 14 N -0.588 5.588 15 C -0.330 4.330 16 H 0.056 0.944 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.960 3.040 20 H -0.254 1.254 21 H -0.273 1.273 22 H -0.234 1.234 23 C -0.076 4.076 24 C -0.206 4.206 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.389 0.611 38 H 0.279 0.721 39 H 0.137 0.863 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.961 -8.323 -2.081 29.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.248 6.248 4 C 0.068 3.932 5 C -0.178 4.178 6 C -0.100 4.100 7 C -0.117 4.117 8 C -0.085 4.085 9 C -0.110 4.110 10 H 0.122 0.878 11 C -0.198 4.198 12 C 0.242 3.758 13 O -0.512 6.512 14 N -0.228 5.228 15 C -0.459 4.459 16 H 0.075 0.925 17 C -0.212 4.212 18 N -0.573 5.573 19 Si 0.779 3.221 20 H -0.179 1.179 21 H -0.198 1.198 22 H -0.158 1.158 23 C -0.094 4.094 24 C -0.224 4.224 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.117 0.883 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.224 0.776 38 H 0.089 0.911 39 H 0.155 0.845 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -27.537 -8.047 -2.667 28.812 hybrid contribution 0.634 0.048 0.743 0.978 sum -26.903 -7.999 -1.924 28.133 Atomic orbital electron populations 1.21804 0.91621 1.04107 1.03126 1.23045 0.96805 0.80896 1.02252 1.86047 1.18854 1.31191 1.88748 1.19147 0.82624 0.94480 0.96977 1.20561 0.95121 0.95404 1.06712 1.21033 0.92182 0.99252 0.97523 1.19743 0.94506 0.93879 1.03607 1.20152 0.90953 1.02766 0.94590 1.21151 0.89892 1.01048 0.98859 0.87763 1.21865 1.03495 0.94360 1.00126 1.21039 0.90519 0.81118 0.83108 1.90527 1.71367 1.56350 1.32929 1.42083 1.08605 1.64427 1.07712 1.19044 0.84688 1.47165 0.95004 0.92543 1.26094 0.96408 0.96144 1.02593 1.69798 1.09870 1.48389 1.29238 0.85439 0.79790 0.79860 0.76973 1.17863 1.19784 1.15751 1.21047 0.94670 0.96821 0.96898 1.21409 0.93846 0.98747 1.08410 0.91906 0.91920 0.88274 0.91226 0.91134 0.84484 0.84684 0.92004 0.91545 0.92580 0.92000 0.89234 0.77580 0.91097 0.84496 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 71.98 0.74 -0.60 16 2 C 0.04 0.55 5.46 71.98 0.39 0.95 16 3 O -0.33 -6.58 10.14 -92.46 -0.94 -7.51 16 4 C 0.11 2.39 6.69 22.51 0.15 2.54 16 5 C -0.16 -3.46 9.99 22.37 0.22 -3.24 16 6 C -0.08 -1.88 9.69 22.26 0.22 -1.66 16 7 C -0.12 -2.86 4.71 -19.85 -0.09 -2.95 16 8 C -0.05 -1.41 4.18 29.84 0.12 -1.29 16 9 C -0.09 -2.83 2.71 -11.54 -0.03 -2.86 16 10 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 11 C -0.14 -3.68 8.67 71.98 0.62 -3.05 16 12 C 0.45 20.98 7.11 87.66 0.62 21.60 16 13 O -0.63 -35.20 15.50 -3.07 -0.05 -35.24 16 14 N -0.59 -28.44 4.98 -306.98 -1.53 -29.97 16 15 C -0.33 -19.60 10.16 84.04 0.85 -18.74 16 16 H 0.06 3.98 7.39 -2.91 -0.02 3.95 16 17 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 18 N -0.93 -56.59 13.96 21.66 0.30 -56.28 16 19 Si 0.96 39.27 27.74 68.60 1.90 41.18 16 20 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.23 -8.21 6.52 99.48 0.65 -7.56 16 23 C -0.08 -1.61 7.97 22.25 0.18 -1.43 16 24 C -0.21 -3.90 9.04 22.37 0.20 -3.70 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 27 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 29 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 30 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 31 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 32 H 0.06 2.07 7.90 -2.39 -0.02 2.05 16 33 H 0.07 2.11 8.08 -2.39 -0.02 2.09 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 1.55 7.56 -2.39 -0.02 1.53 16 36 H 0.09 1.87 6.28 -2.39 -0.02 1.85 16 37 H 0.39 15.82 5.18 -92.71 -0.48 15.34 16 38 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.14 2.51 8.05 -2.92 -0.02 2.49 16 40 H 0.15 2.02 6.30 -2.91 -0.02 2.01 16 Total: -1.00 -75.48 332.40 4.86 -70.62 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: 0.50 Total: 31.94 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 4.67 Total: -14.72 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -1.23 Total: -86.26 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -0.98 Total: -42.76 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 1.90 Total: 41.18 kcal Total: -75.48 4.86 -70.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591069039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.963 kcal (2) G-P(sol) polarization free energy of solvation -75.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds