Wall clock time and date at job start Mon Mar 30 2020 01:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47260 * 2 1 4 4 C 1.35974 * 117.00018 * 180.02562 * 3 2 1 5 5 C 1.38718 * 120.07045 * 359.71911 * 4 3 2 6 6 C 1.37945 * 119.90282 * 179.69912 * 5 4 3 7 7 C 1.39133 * 120.29394 * 0.47337 * 6 5 4 8 8 C 1.38354 * 119.77749 * 359.89824 * 7 6 5 9 9 C 1.38500 * 119.88476 * 359.83617 * 8 7 6 10 10 C 1.50785 * 121.40579 * 179.67673 * 8 7 6 11 11 H 1.09001 * 109.42997 * 257.80443 * 10 8 7 12 12 N 1.46899 * 109.43230 * 137.89615 * 10 8 7 13 13 C 1.46900 * 110.99726 * 153.96416 * 12 10 8 14 14 C 1.50702 * 109.47002 * 185.19482 * 13 12 10 15 15 H 1.07996 * 119.99668 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00090 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00199 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00029 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47064 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47239 * 119.99823 * 18 16 14 21 21 H 1.48499 * 109.46917 * 239.99635 * 18 16 14 22 22 C 1.53066 * 109.69427 * 17.82482 * 10 8 7 23 23 C 1.53405 * 108.29509 * 311.78000 * 22 10 8 24 24 O 1.35946 * 118.44085 * 180.02562 * 7 6 5 25 25 H 1.08999 * 109.47571 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47507 * 300.00068 * 1 2 3 27 27 H 1.09004 * 109.47529 * 60.00046 * 1 2 3 28 28 H 1.08994 * 109.47185 * 239.99615 * 2 1 3 29 29 H 1.09009 * 109.46892 * 119.99691 * 2 1 3 30 30 H 1.08008 * 120.04856 * 359.92302 * 5 4 3 31 31 H 1.08004 * 119.85907 * 180.19903 * 6 5 4 32 32 H 1.08006 * 119.86188 * 180.08404 * 9 8 7 33 33 H 1.00897 * 110.99645 * 277.90814 * 12 10 8 34 34 H 1.09007 * 109.47259 * 305.18362 * 13 12 10 35 35 H 1.08997 * 109.47543 * 65.19148 * 13 12 10 36 36 H 0.96995 * 120.00318 * 180.02562 * 17 16 14 37 37 H 1.08995 * 109.69797 * 71.48044 * 22 10 8 38 38 H 1.08999 * 109.69744 * 192.07686 * 22 10 8 39 39 H 1.09002 * 109.68734 * 184.45156 * 23 22 10 40 40 H 1.09001 * 109.68661 * 304.97132 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 4.2007 0.4263 0.0048 6 6 5.5677 0.6110 -0.0020 7 6 6.1024 1.8955 -0.0044 8 6 5.2578 2.9913 -0.0019 9 6 3.8854 2.8049 -0.0006 10 6 5.7975 4.3993 0.0029 11 1 5.7235 4.8125 1.0088 12 7 5.0137 5.2263 -0.9242 13 6 5.0552 6.6411 -0.5312 14 6 4.1408 7.4380 -1.4257 15 1 3.5849 6.9429 -2.2081 16 6 4.0148 8.7991 -1.2459 17 7 4.6921 9.4021 -0.2934 18 14 2.8819 9.7869 -2.3551 19 1 2.2397 8.8801 -3.3404 20 1 1.8356 10.4462 -1.5331 21 1 3.6703 10.8197 -3.0741 22 6 7.2637 4.3912 -0.4367 23 6 7.9981 3.3023 0.3559 24 8 7.4548 2.0338 -0.0117 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.7899 -0.5726 0.0107 31 1 6.2260 -0.2452 -0.0011 32 1 3.2265 3.6606 -0.0001 33 1 5.3321 5.1055 -1.8740 34 1 4.7278 6.7405 0.5038 35 1 6.0743 7.0154 -0.6276 36 1 4.6031 10.3596 -0.1666 37 1 7.3263 4.1749 -1.5031 38 1 7.7142 5.3623 -0.2312 39 1 9.0615 3.3292 0.1181 40 1 7.8565 3.4670 1.4240 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591761028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:41 Heat of formation + Delta-G solvation = -56.483461 kcal Electronic energy + Delta-G solvation = -21347.776134 eV Core-core repulsion = 18127.708486 eV Total energy + Delta-G solvation = -3220.067648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.61000 -39.15802 -36.37305 -35.96711 -32.97331 -31.87260 -30.96579 -30.31793 -28.85513 -26.56568 -24.30959 -23.92967 -22.62839 -22.01709 -21.35735 -19.81293 -17.78535 -17.46081 -16.48855 -16.32312 -16.04505 -15.26420 -15.00217 -14.69709 -14.22980 -13.87078 -13.62612 -13.44097 -13.33216 -12.95669 -12.82153 -12.54525 -12.30164 -12.23354 -12.00036 -11.58777 -11.41302 -11.12060 -11.06930 -10.82081 -10.74839 -10.65367 -10.31557 -10.08477 -9.80668 -9.22858 -8.59309 -8.49371 -7.48411 -7.37794 -6.05066 -4.06665 1.49585 1.70432 3.30738 3.30941 3.38236 3.43781 3.51913 3.95724 4.42357 4.83152 4.83770 4.86267 4.92207 4.99484 5.07694 5.11009 5.19729 5.26750 5.31386 5.37901 5.47192 5.63280 5.68710 5.76097 5.82340 5.86127 5.92204 6.12006 6.13209 6.30953 6.32945 6.58239 6.75925 6.87531 7.18272 7.33864 7.50533 7.74791 7.76849 8.08396 8.33293 8.53563 9.02574 9.58533 11.05897 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.005005 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.722019 B = 5592.963183 C = 7441.724233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.315 6.315 4 C 0.088 3.912 5 C -0.180 4.180 6 C -0.122 4.122 7 C 0.093 3.907 8 C -0.102 4.102 9 C -0.080 4.080 10 C 0.127 3.873 11 H 0.087 0.913 12 N -0.675 5.675 13 C 0.194 3.806 14 C -0.511 4.511 15 H 0.064 0.936 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.187 4.187 23 C 0.067 3.933 24 O -0.322 6.322 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.147 0.853 33 H 0.333 0.667 34 H 0.028 0.972 35 H -0.012 1.012 36 H 0.261 0.739 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.663 -18.689 2.114 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.229 6.229 4 C 0.043 3.957 5 C -0.199 4.199 6 C -0.141 4.141 7 C 0.048 3.952 8 C -0.104 4.104 9 C -0.099 4.099 10 C 0.016 3.984 11 H 0.105 0.895 12 N -0.304 5.304 13 C 0.067 3.933 14 C -0.550 4.550 15 H 0.082 0.918 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.226 4.226 23 C -0.009 4.009 24 O -0.236 6.236 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.165 0.835 33 H 0.150 0.850 34 H 0.046 0.954 35 H 0.006 0.994 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.120 0.880 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.054 -18.592 2.461 18.754 hybrid contribution 0.409 0.901 -0.746 1.239 sum 0.464 -17.691 1.715 17.780 Atomic orbital electron populations 1.21767 0.93046 1.02449 1.03672 1.22687 0.95689 0.82666 1.00912 1.86110 1.19119 1.28343 1.89368 1.18864 0.82153 0.94059 1.00598 1.20898 0.93215 0.97885 1.07906 1.20197 0.94253 0.94799 1.04825 1.18637 0.82346 0.93213 1.00963 1.19822 0.92934 0.94555 1.03082 1.20325 0.94399 0.95014 1.00132 1.20343 0.89264 0.89899 0.98897 0.89474 1.60692 1.54708 1.10640 1.04363 1.19630 0.95438 0.81098 0.97087 1.21204 1.25508 0.91995 1.16292 0.91819 1.24975 0.96097 0.97810 0.95647 1.69961 1.41875 1.10043 1.31955 0.86434 0.80512 0.79894 0.80536 1.19623 1.20991 1.21132 1.23014 0.98230 1.00114 1.01273 1.22894 0.97824 0.81489 0.98726 1.85930 1.18108 1.35007 1.84585 0.90730 0.91531 0.91452 0.92411 0.92470 0.85555 0.85553 0.83541 0.84984 0.95354 0.99384 0.92972 0.90541 0.89582 0.87993 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.91 16 2 C 0.06 0.58 5.46 37.16 0.20 0.78 16 3 O -0.31 -4.68 10.14 -19.66 -0.20 -4.88 16 4 C 0.09 1.37 6.68 -39.30 -0.26 1.11 16 5 C -0.18 -2.42 9.03 -39.51 -0.36 -2.77 16 6 C -0.12 -1.70 9.93 -39.36 -0.39 -2.09 16 7 C 0.09 1.48 6.47 -39.21 -0.25 1.22 16 8 C -0.10 -1.75 5.56 -104.44 -0.58 -2.33 16 9 C -0.08 -1.40 9.20 -39.38 -0.36 -1.76 16 10 C 0.13 2.26 2.60 -68.79 -0.18 2.08 16 11 H 0.09 1.62 7.70 -51.93 -0.40 1.22 16 12 N -0.68 -14.19 5.42 -109.14 -0.59 -14.78 16 13 C 0.19 4.93 5.27 -4.97 -0.03 4.90 16 14 C -0.51 -14.33 9.36 -34.44 -0.32 -14.65 16 15 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 18 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.19 -2.85 5.53 -26.49 -0.15 -2.99 16 23 C 0.07 0.87 7.03 37.37 0.26 1.13 16 24 O -0.32 -4.83 10.27 -19.57 -0.20 -5.03 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.54 7.68 -51.93 -0.40 0.14 16 29 H 0.06 0.52 7.65 -51.92 -0.40 0.12 16 30 H 0.13 1.32 6.31 -52.48 -0.33 0.99 16 31 H 0.13 1.49 8.06 -52.48 -0.42 1.06 16 32 H 0.15 2.84 7.69 -52.48 -0.40 2.43 16 33 H 0.33 6.83 8.36 -39.29 -0.33 6.50 16 34 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 35 H -0.01 -0.31 7.98 -51.93 -0.41 -0.72 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.08 1.18 7.90 -51.93 -0.41 0.77 16 38 H 0.09 1.32 8.00 -51.93 -0.42 0.90 16 39 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 329.93 15.07 4.97 4.97 Total: -1.00 -30.68 329.93 -8.43 -39.11 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.99 Total: 4.58 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -2.13 Total: -14.80 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.14 Total: -40.60 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.40 Total: -9.91 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.68 -8.43 -39.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591761028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.378 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds