Wall clock time and date at job start Mon Mar 30 2020 01:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47260 * 2 1 4 4 C 1.35974 * 117.00018 * 180.02562 * 3 2 1 5 5 C 1.38718 * 120.07045 * 359.71911 * 4 3 2 6 6 C 1.37945 * 119.90282 * 179.69912 * 5 4 3 7 7 C 1.39133 * 120.29394 * 0.47337 * 6 5 4 8 8 C 1.38354 * 119.77749 * 359.89824 * 7 6 5 9 9 C 1.38500 * 119.88476 * 359.83617 * 8 7 6 10 10 C 1.50785 * 121.40579 * 179.67673 * 8 7 6 11 11 H 1.09001 * 109.42997 * 257.80443 * 10 8 7 12 12 N 1.46899 * 109.43230 * 137.89615 * 10 8 7 13 13 C 1.46900 * 110.99726 * 153.96416 * 12 10 8 14 14 C 1.50702 * 109.47002 * 185.19482 * 13 12 10 15 15 H 1.07996 * 119.99668 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00090 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00199 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00029 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47064 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47239 * 119.99823 * 18 16 14 21 21 H 1.48499 * 109.46917 * 239.99635 * 18 16 14 22 22 C 1.53066 * 109.69427 * 17.82482 * 10 8 7 23 23 C 1.53405 * 108.29509 * 311.78000 * 22 10 8 24 24 O 1.35946 * 118.44085 * 180.02562 * 7 6 5 25 25 H 1.08999 * 109.47571 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47507 * 300.00068 * 1 2 3 27 27 H 1.09004 * 109.47529 * 60.00046 * 1 2 3 28 28 H 1.08994 * 109.47185 * 239.99615 * 2 1 3 29 29 H 1.09009 * 109.46892 * 119.99691 * 2 1 3 30 30 H 1.08008 * 120.04856 * 359.92302 * 5 4 3 31 31 H 1.08004 * 119.85907 * 180.19903 * 6 5 4 32 32 H 1.08006 * 119.86188 * 180.08404 * 9 8 7 33 33 H 1.00897 * 110.99645 * 277.90814 * 12 10 8 34 34 H 1.09007 * 109.47259 * 305.18362 * 13 12 10 35 35 H 1.08997 * 109.47543 * 65.19148 * 13 12 10 36 36 H 0.96995 * 120.00318 * 180.02562 * 17 16 14 37 37 H 1.08995 * 109.69797 * 71.48044 * 22 10 8 38 38 H 1.08999 * 109.69744 * 192.07686 * 22 10 8 39 39 H 1.09002 * 109.68734 * 184.45156 * 23 22 10 40 40 H 1.09001 * 109.68661 * 304.97132 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 4.2007 0.4263 0.0048 6 6 5.5677 0.6110 -0.0020 7 6 6.1024 1.8955 -0.0044 8 6 5.2578 2.9913 -0.0019 9 6 3.8854 2.8049 -0.0006 10 6 5.7975 4.3993 0.0029 11 1 5.7235 4.8125 1.0088 12 7 5.0137 5.2263 -0.9242 13 6 5.0552 6.6411 -0.5312 14 6 4.1408 7.4380 -1.4257 15 1 3.5849 6.9429 -2.2081 16 6 4.0148 8.7991 -1.2459 17 7 4.6921 9.4021 -0.2934 18 14 2.8819 9.7869 -2.3551 19 1 2.2397 8.8801 -3.3404 20 1 1.8356 10.4462 -1.5331 21 1 3.6703 10.8197 -3.0741 22 6 7.2637 4.3912 -0.4367 23 6 7.9981 3.3023 0.3559 24 8 7.4548 2.0338 -0.0117 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.7899 -0.5726 0.0107 31 1 6.2260 -0.2452 -0.0011 32 1 3.2265 3.6606 -0.0001 33 1 5.3321 5.1055 -1.8740 34 1 4.7278 6.7405 0.5038 35 1 6.0743 7.0154 -0.6276 36 1 4.6031 10.3596 -0.1666 37 1 7.3263 4.1749 -1.5031 38 1 7.7142 5.3623 -0.2312 39 1 9.0615 3.3292 0.1181 40 1 7.8565 3.4670 1.4240 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591761028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:40 Heat of formation + Delta-G solvation = -76.281163 kcal Electronic energy + Delta-G solvation = -21348.634627 eV Core-core repulsion = 18127.708486 eV Total energy + Delta-G solvation = -3220.926141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.80607 -40.25669 -37.72690 -37.31075 -34.98242 -32.84564 -32.50065 -31.48432 -30.04922 -28.45617 -25.64440 -25.06137 -24.01080 -23.25815 -22.99539 -21.01199 -19.07514 -18.60298 -18.33561 -17.61418 -16.97467 -16.82372 -16.45321 -16.09139 -15.64750 -15.49319 -14.91761 -14.72547 -14.32645 -14.24049 -14.06359 -13.91106 -13.68284 -13.44838 -13.31983 -13.01468 -12.80677 -12.70940 -12.43441 -12.39809 -12.14724 -11.95021 -11.86527 -11.50550 -11.24261 -11.07824 -10.67245 -9.83514 -9.14539 -8.64972 -8.23735 -6.34211 0.29744 0.50573 1.39416 1.40426 1.54189 2.30205 2.38498 2.43956 2.75739 3.09541 3.42324 3.66831 3.76012 3.86662 3.96532 4.08067 4.11899 4.19416 4.29367 4.32264 4.43639 4.48570 4.61159 4.67513 4.74865 4.88945 4.96534 4.98333 5.04919 5.08026 5.11365 5.22895 5.24515 5.40332 5.54321 5.59197 5.68571 6.00777 6.39564 6.41447 6.62936 6.65632 6.85085 7.36447 8.87517 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.005005 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.722019 B = 5592.963183 C = 7441.724233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.340 6.340 4 C 0.084 3.916 5 C -0.166 4.166 6 C -0.114 4.114 7 C 0.084 3.916 8 C -0.116 4.116 9 C -0.108 4.108 10 C 0.126 3.874 11 H 0.069 0.931 12 N -0.676 5.676 13 C 0.213 3.787 14 C -0.533 4.533 15 H 0.060 0.940 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.970 3.030 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.275 1.275 22 C -0.180 4.180 23 C 0.069 3.931 24 O -0.322 6.322 25 H 0.104 0.896 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.164 0.836 31 H 0.158 0.842 32 H 0.113 0.887 33 H 0.335 0.665 34 H -0.001 1.001 35 H -0.030 1.030 36 H 0.265 0.735 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.136 0.864 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.800 -21.111 1.485 21.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.255 6.255 4 C 0.039 3.961 5 C -0.184 4.184 6 C -0.132 4.132 7 C 0.039 3.961 8 C -0.118 4.118 9 C -0.127 4.127 10 C 0.015 3.985 11 H 0.087 0.913 12 N -0.305 5.305 13 C 0.085 3.915 14 C -0.571 4.571 15 H 0.078 0.922 16 C -0.194 4.194 17 N -0.573 5.573 18 Si 0.795 3.205 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.201 1.201 22 C -0.219 4.219 23 C -0.006 4.006 24 O -0.237 6.237 25 H 0.123 0.877 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.182 0.818 31 H 0.175 0.825 32 H 0.131 0.869 33 H 0.153 0.847 34 H 0.017 0.983 35 H -0.012 1.012 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.154 0.846 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.194 -21.041 1.833 21.122 hybrid contribution 0.328 1.552 -0.505 1.665 sum 0.522 -19.489 1.328 19.541 Atomic orbital electron populations 1.21816 0.91949 1.04157 1.02843 1.23075 0.96678 0.80815 1.02453 1.86098 1.18747 1.31428 1.89258 1.18915 0.83019 0.93875 1.00253 1.21255 0.92746 0.98727 1.05696 1.20605 0.94890 0.94843 1.02868 1.18805 0.82568 0.93490 1.01238 1.19661 0.93057 0.94236 1.04803 1.20164 0.94418 0.95315 1.02823 1.20330 0.90903 0.90101 0.97144 0.91278 1.60529 1.56424 1.08454 1.05055 1.19221 0.93758 0.83452 0.95025 1.21533 1.26081 0.92844 1.16675 0.92180 1.25881 0.97550 0.98901 0.97053 1.70075 1.43175 1.10576 1.33425 0.85324 0.78400 0.78236 0.78570 1.19013 1.20406 1.20092 1.22892 0.96417 1.01046 1.01566 1.23056 0.99045 0.79806 0.98678 1.85930 1.17506 1.35623 1.84639 0.87695 0.92273 0.92408 0.90867 0.90671 0.81847 0.82464 0.86866 0.84701 0.98322 1.01183 0.92595 0.90647 0.90104 0.84600 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 10.28 71.98 0.74 -1.56 16 2 C 0.04 0.81 5.46 71.98 0.39 1.21 16 3 O -0.34 -9.98 10.14 -93.26 -0.95 -10.92 16 4 C 0.08 2.59 6.68 22.45 0.15 2.74 16 5 C -0.17 -3.96 9.03 22.31 0.20 -3.76 16 6 C -0.11 -2.82 9.93 22.42 0.22 -2.60 16 7 C 0.08 2.54 6.47 22.51 0.15 2.68 16 8 C -0.12 -4.05 5.56 -19.75 -0.11 -4.16 16 9 C -0.11 -3.96 9.20 22.40 0.21 -3.75 16 10 C 0.13 4.71 2.60 44.22 0.11 4.82 16 11 H 0.07 2.78 7.70 -2.39 -0.02 2.76 16 12 N -0.68 -30.11 5.42 -499.20 -2.71 -32.82 16 13 C 0.21 11.46 5.27 85.56 0.45 11.92 16 14 C -0.53 -30.92 9.36 25.60 0.24 -30.68 16 15 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 16 C 0.00 0.26 5.46 84.66 0.46 0.72 16 17 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 18 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 C -0.18 -5.53 5.53 30.75 0.17 -5.36 16 23 C 0.07 1.70 7.03 72.12 0.51 2.20 16 24 O -0.32 -8.98 10.27 -92.94 -0.95 -9.94 16 25 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 1.12 7.68 -2.39 -0.02 1.10 16 29 H 0.08 1.11 7.65 -2.38 -0.02 1.10 16 30 H 0.16 2.65 6.31 -2.91 -0.02 2.63 16 31 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 32 H 0.11 4.81 7.69 -2.91 -0.02 4.78 16 33 H 0.34 14.45 8.36 -89.70 -0.75 13.70 16 34 H 0.00 -0.08 7.92 -2.38 -0.02 -0.10 16 35 H -0.03 -1.66 7.98 -2.39 -0.02 -1.68 16 36 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 37 H 0.07 2.33 7.90 -2.39 -0.02 2.31 16 38 H 0.08 2.55 8.00 -2.39 -0.02 2.53 16 39 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -68.42 329.93 1.89 -66.54 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.29 Total: 21.81 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 3.89 Total: -25.58 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -2.42 Total: -88.94 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -1.90 Total: -20.86 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -68.42 1.89 -66.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591761028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.743 kcal (2) G-P(sol) polarization free energy of solvation -68.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds