Wall clock time and date at job start Mon Mar 30 2020 01:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00336 * 2 1 4 4 C 1.38755 * 120.05069 * 359.73275 * 3 2 1 5 5 C 1.38127 * 119.93957 * 179.74320 * 4 3 2 6 6 C 1.38289 * 120.05463 * 0.50379 * 5 4 3 7 7 C 1.38242 * 120.11360 * 359.76790 * 6 5 4 8 8 C 1.50695 * 119.97371 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.47374 * 269.97814 * 8 7 6 10 10 C 1.47844 * 110.99915 * 290.84611 * 9 8 7 11 11 C 1.54912 * 104.79277 * 213.63509 * 10 9 8 12 12 C 1.55132 * 101.65378 * 37.06698 * 11 10 9 13 13 O 1.42905 * 110.70501 * 82.73039 * 12 11 10 14 14 C 1.50706 * 110.85691 * 205.89316 * 12 11 10 15 15 H 1.07995 * 119.99611 * 113.68766 * 14 12 11 16 16 C 1.37878 * 119.99776 * 293.68685 * 14 12 11 17 17 N 1.31515 * 120.00332 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99729 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46786 * 90.00253 * 18 16 14 20 20 H 1.48493 * 109.47084 * 210.00242 * 18 16 14 21 21 H 1.48502 * 109.47419 * 330.00562 * 18 16 14 22 22 C 1.47436 * 111.00215 * 169.99890 * 9 8 7 23 23 C 1.38166 * 120.05324 * 359.97438 * 7 6 5 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99705 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99826 * 1 2 3 27 27 H 1.07996 * 120.03138 * 359.96835 * 4 3 2 28 28 H 1.08000 * 119.97356 * 180.24789 * 5 4 3 29 29 H 1.08005 * 119.94336 * 179.74460 * 6 5 4 30 30 H 1.09000 * 109.47120 * 29.97578 * 8 7 6 31 31 H 1.09003 * 109.47279 * 149.97888 * 8 7 6 32 32 H 1.08997 * 110.37365 * 332.45759 * 10 9 8 33 33 H 1.09002 * 110.37567 * 94.80384 * 10 9 8 34 34 H 1.08998 * 110.98743 * 278.97466 * 11 10 9 35 35 H 1.09003 * 111.02307 * 155.17843 * 11 10 9 36 36 H 0.96702 * 114.00007 * 66.40160 * 13 12 11 37 37 H 0.96991 * 120.00146 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.89051 * 242.66248 * 22 9 8 39 39 H 1.09004 * 109.88937 * 3.85618 * 22 9 8 40 40 H 1.08001 * 120.02660 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 -0.0056 5 6 1.9210 3.6047 -0.0002 6 6 3.3020 3.6757 0.0002 7 6 4.0561 2.5170 0.0001 8 6 5.5609 2.5980 0.0000 9 7 6.0498 2.6239 -1.3851 10 6 5.8331 1.3202 -2.0478 11 6 7.0356 1.1616 -3.0114 12 6 8.1873 1.7864 -2.1808 13 8 8.7191 0.8337 -1.2579 14 6 9.2729 2.3158 -3.0821 15 1 9.4641 3.3776 -3.1310 16 6 10.0220 1.4445 -3.8441 17 7 9.7889 0.1516 -3.7849 18 14 11.3672 2.1008 -4.9618 19 1 12.6489 2.1567 -4.2137 20 1 11.5177 1.2031 -6.1351 21 1 11.0046 3.4643 -5.4250 22 6 7.4890 2.9407 -1.4315 23 6 3.4312 1.2848 0.0001 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 0.2129 2.3203 -0.0105 28 1 1.3341 4.5114 -0.0005 29 1 3.7924 4.6380 0.0002 30 1 5.8758 3.5065 0.5135 31 1 5.9716 1.7290 0.5141 32 1 5.8282 0.5164 -1.3117 33 1 4.8974 1.3296 -2.6070 34 1 6.8728 1.7188 -3.9340 35 1 7.2319 0.1103 -3.2221 36 1 9.1686 0.0877 -1.6781 37 1 10.3156 -0.4613 -4.3213 38 1 7.6453 3.8778 -1.9659 39 1 7.8845 3.0183 -0.4188 40 1 4.0207 0.3798 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592146175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:43 Heat of formation + Delta-G solvation = -76.496261 kcal Electronic energy + Delta-G solvation = -21604.648012 eV Core-core repulsion = 18383.712544 eV Total energy + Delta-G solvation = -3220.935468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.15946 -40.12665 -38.44910 -36.46053 -34.12424 -33.16059 -31.54742 -30.45729 -29.87740 -28.14767 -26.98531 -25.58469 -23.43579 -22.41907 -21.53787 -21.27341 -19.15594 -18.65812 -17.20431 -16.97735 -16.90804 -16.80515 -16.58859 -16.20531 -15.85889 -15.26034 -14.93542 -14.54342 -14.37996 -13.95231 -13.80852 -13.47577 -13.35149 -13.18903 -13.02488 -12.71280 -12.70047 -12.46743 -12.31684 -12.18790 -12.14647 -11.94523 -11.87416 -11.54531 -11.16906 -10.62941 -10.11833 -9.81851 -9.25396 -9.10900 -8.22034 -6.37089 0.36133 0.53956 1.41420 1.43083 1.53071 2.38475 2.39923 2.74948 3.02322 3.30712 3.78969 3.88989 3.90382 4.07410 4.26361 4.28532 4.35318 4.38818 4.41587 4.45854 4.49827 4.58245 4.62429 4.73836 4.75601 4.81562 4.82914 5.08588 5.12393 5.25799 5.35977 5.47268 5.51365 5.52377 5.72340 5.80092 5.83899 5.96367 6.18257 6.19380 6.50438 6.67719 7.33700 7.43054 8.83665 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033540 B = 0.003851 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.615326 B = 7268.178634 C = 7653.080274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.343 6.343 3 C 0.113 3.887 4 C -0.209 4.209 5 C -0.079 4.079 6 C -0.144 4.144 7 C -0.040 4.040 8 C 0.088 3.912 9 N -0.519 5.519 10 C 0.059 3.941 11 C -0.124 4.124 12 C 0.220 3.780 13 O -0.599 6.599 14 C -0.557 4.557 15 H 0.059 0.941 16 C 0.027 3.973 17 N -0.917 5.917 18 Si 0.963 3.037 19 H -0.276 1.276 20 H -0.281 1.281 21 H -0.269 1.269 22 C 0.064 3.936 23 C -0.166 4.166 24 H 0.115 0.885 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.153 0.847 28 H 0.156 0.844 29 H 0.136 0.864 30 H 0.095 0.905 31 H 0.031 0.969 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.377 0.623 37 H 0.269 0.731 38 H 0.082 0.918 39 H 0.048 0.952 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.879 3.687 7.077 19.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.068 3.932 4 C -0.228 4.228 5 C -0.096 4.096 6 C -0.163 4.163 7 C -0.041 4.041 8 C -0.039 4.039 9 N -0.243 5.243 10 C -0.068 4.068 11 C -0.163 4.163 12 C 0.180 3.820 13 O -0.409 6.409 14 C -0.595 4.595 15 H 0.077 0.923 16 C -0.173 4.173 17 N -0.557 5.557 18 Si 0.788 3.212 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.193 1.193 22 C -0.063 4.063 23 C -0.185 4.185 24 H 0.133 0.867 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.171 0.829 28 H 0.174 0.826 29 H 0.154 0.846 30 H 0.113 0.887 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.228 0.772 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.281 4.132 7.193 20.076 hybrid contribution 1.537 -1.106 -0.710 2.023 sum -16.744 3.026 6.483 18.209 Atomic orbital electron populations 1.23336 0.76367 1.05431 1.02371 1.86052 1.23632 1.27130 1.88869 1.19092 0.91937 0.85137 0.97065 1.21503 1.01084 0.91729 1.08454 1.21277 0.94116 0.98035 0.96220 1.21158 0.94330 0.97966 1.02855 1.19537 0.94609 0.92796 0.97140 1.21266 0.91251 1.01655 0.89736 1.63733 1.15796 1.29619 1.15119 1.22900 0.98228 0.89488 0.96231 1.22985 0.95410 1.00207 0.97731 1.19972 0.90357 0.85716 0.85934 1.86064 1.77092 1.38973 1.38779 1.21901 1.18657 0.94046 1.24920 0.92267 1.25736 0.98999 0.95121 0.97447 1.69680 1.41360 1.02571 1.42125 0.85486 0.79104 0.78430 0.78162 1.20218 1.20670 1.19332 1.22740 0.85998 0.98242 0.99343 1.20356 0.92260 0.97998 1.07888 0.86665 0.91705 0.91323 0.82914 0.82639 0.84591 0.88664 0.95073 0.94904 0.91119 0.92994 0.92960 0.77223 0.92126 0.89993 0.93321 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.34 -8.64 10.50 -92.43 -0.97 -9.61 16 3 C 0.11 3.02 6.69 22.51 0.15 3.17 16 4 C -0.21 -4.40 9.04 22.37 0.20 -4.20 16 5 C -0.08 -1.60 10.04 22.26 0.22 -1.38 16 6 C -0.14 -3.60 9.70 22.28 0.22 -3.39 16 7 C -0.04 -1.21 5.09 -19.88 -0.10 -1.31 16 8 C 0.09 2.97 4.72 85.55 0.40 3.37 16 9 N -0.52 -20.38 5.15 -890.10 -4.59 -24.97 16 10 C 0.06 2.46 5.60 86.78 0.49 2.95 16 11 C -0.12 -6.04 5.67 31.98 0.18 -5.85 16 12 C 0.22 11.25 0.85 -10.36 -0.01 11.24 16 13 O -0.60 -32.38 13.08 -148.98 -1.95 -34.33 16 14 C -0.56 -30.42 8.22 25.60 0.21 -30.21 16 15 H 0.06 3.19 7.53 -2.91 -0.02 3.16 16 16 C 0.03 1.43 5.28 84.65 0.45 1.88 16 17 N -0.92 -50.08 10.69 21.45 0.23 -49.85 16 18 Si 0.96 42.65 29.54 68.60 2.03 44.68 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 22 C 0.06 2.83 6.21 86.65 0.54 3.37 16 23 C -0.17 -5.13 8.86 22.36 0.20 -4.93 16 24 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 0.79 7.65 -2.39 -0.02 0.77 16 26 H 0.07 0.76 7.67 -2.38 -0.02 0.75 16 27 H 0.15 2.21 6.30 -2.91 -0.02 2.19 16 28 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 29 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 30 H 0.10 2.83 7.98 -2.39 -0.02 2.82 16 31 H 0.03 1.13 7.79 -2.39 -0.02 1.11 16 32 H 0.03 1.39 6.99 -2.39 -0.02 1.37 16 33 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.05 2.58 8.05 -2.39 -0.02 2.56 16 35 H 0.05 2.70 7.76 -2.39 -0.02 2.68 16 36 H 0.38 21.00 6.98 -74.06 -0.52 20.48 16 37 H 0.27 13.99 8.31 -92.72 -0.77 13.22 16 38 H 0.08 3.56 7.63 -2.39 -0.02 3.55 16 39 H 0.05 2.10 7.48 -2.39 -0.02 2.08 16 40 H 0.11 3.65 7.48 -2.91 -0.02 3.63 16 Total: -1.00 -61.93 324.07 -0.47 -62.40 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: 0.52 Total: 35.57 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 4.26 Total: -23.89 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -4.36 Total: -74.82 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -2.92 Total: -43.94 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -61.93 -0.47 -62.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.093 kcal (2) G-P(sol) polarization free energy of solvation -61.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds