Wall clock time and date at job start Mon Mar 30 2020 01:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 117.00134 * 2 1 4 4 C 1.38754 * 120.05742 * 0.25042 * 3 2 1 5 5 C 1.38113 * 119.94782 * 180.27755 * 4 3 2 6 6 C 1.38289 * 120.05490 * 359.72072 * 5 4 3 7 7 C 1.38250 * 120.11178 * 0.02716 * 6 5 4 8 8 C 1.38161 * 120.05024 * 359.97309 * 7 6 5 9 9 C 1.50701 * 120.02433 * 180.02562 * 8 7 6 10 10 N 1.46894 * 109.47324 * 105.28312 * 9 8 7 11 11 C 1.47443 * 111.00125 * 284.38026 * 10 9 8 12 12 C 1.54322 * 107.23286 * 236.73908 * 11 10 9 13 13 C 1.55134 * 103.17742 * 337.63181 * 12 11 10 14 14 O 1.42905 * 110.99048 * 277.64655 * 13 12 11 15 15 C 1.50699 * 110.99225 * 153.83004 * 13 12 11 16 16 H 1.07996 * 120.00320 * 241.44929 * 15 13 12 17 17 C 1.37882 * 119.99835 * 61.45461 * 15 13 12 18 18 N 1.31514 * 120.00141 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99929 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47567 * 89.99659 * 19 17 15 21 21 H 1.48503 * 109.47143 * 209.99804 * 19 17 15 22 22 H 1.48504 * 109.47079 * 329.99460 * 19 17 15 23 23 C 1.47853 * 111.00196 * 163.53751 * 10 9 8 24 24 H 1.09003 * 109.46805 * 60.00349 * 1 2 3 25 25 H 1.09000 * 109.47105 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47245 * 300.00561 * 1 2 3 27 27 H 1.08007 * 120.02726 * 0.02562 * 4 3 2 28 28 H 1.08005 * 119.97802 * 179.74315 * 5 4 3 29 29 H 1.08006 * 119.94541 * 180.02562 * 6 5 4 30 30 H 1.07998 * 119.96923 * 179.97438 * 7 6 5 31 31 H 1.09005 * 109.47485 * 345.28492 * 9 8 7 32 32 H 1.09002 * 109.46994 * 225.28515 * 9 8 7 33 33 H 1.08999 * 109.89082 * 117.33656 * 11 10 9 34 34 H 1.08996 * 109.89090 * 356.14378 * 11 10 9 35 35 H 1.09002 * 110.70035 * 96.09988 * 12 11 10 36 36 H 1.08997 * 110.70754 * 219.15733 * 12 11 10 37 37 H 0.96698 * 114.00193 * 298.54651 * 14 13 12 38 38 H 0.96999 * 120.00444 * 180.02562 * 18 17 15 39 39 H 1.09004 * 110.36873 * 265.19661 * 23 10 9 40 40 H 1.08998 * 110.37058 * 27.42206 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0052 5 6 1.9209 3.6047 -0.0006 6 6 3.3019 3.6758 -0.0058 7 6 4.0560 2.5170 -0.0057 8 6 3.4311 1.2849 0.0001 9 6 4.2537 0.0222 0.0007 10 7 4.2200 -0.5836 1.3385 11 6 5.0862 0.1555 2.2752 12 6 6.1012 -0.8534 2.8525 13 6 5.3967 -2.2203 2.6473 14 8 4.4604 -2.4762 3.6961 15 6 6.4040 -3.3363 2.5416 16 1 6.4647 -3.9252 1.6384 17 6 7.2480 -3.6055 3.5982 18 7 7.1744 -2.8881 4.6980 19 14 8.4970 -4.9882 3.4669 20 1 9.7672 -4.4569 2.9106 21 1 8.7474 -5.5587 4.8150 22 1 7.9694 -6.0485 2.5710 23 6 4.6685 -1.9918 1.2940 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2128 2.3204 0.0098 28 1 1.3340 4.5114 -0.0007 29 1 3.7923 4.6381 -0.0099 30 1 5.1344 2.5752 -0.0102 31 1 5.2840 0.2595 -0.2648 32 1 3.8435 -0.6790 -0.7261 33 1 4.4855 0.5790 3.0802 34 1 5.6128 0.9494 1.7456 35 1 7.0391 -0.8162 2.2984 36 1 6.2732 -0.6637 3.9119 37 1 4.8591 -2.5263 4.5757 38 1 7.7684 -3.0772 5.4411 39 1 3.8118 -2.6602 1.2068 40 1 5.3549 -2.1452 0.4614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592523646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:54 Heat of formation + Delta-G solvation = -53.250481 kcal Electronic energy + Delta-G solvation = -21984.095552 eV Core-core repulsion = 18764.168096 eV Total energy + Delta-G solvation = -3219.927456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.10364 -38.18904 -37.15816 -34.74416 -32.08973 -31.91479 -30.03175 -28.97846 -27.97133 -27.18285 -25.43007 -23.88698 -22.00851 -21.36455 -19.78937 -19.46437 -17.79716 -16.94937 -16.08934 -15.61945 -15.56127 -14.98316 -14.83709 -14.50855 -14.36656 -13.90550 -13.56977 -13.33995 -12.69494 -12.35896 -12.32552 -12.14937 -11.82779 -11.57910 -11.41215 -11.21414 -11.05520 -10.98959 -10.91964 -10.70675 -10.45367 -10.37776 -10.19276 -9.74963 -9.11947 -8.77174 -8.54846 -8.02931 -7.94133 -7.44240 -6.16330 -4.24383 1.42747 1.59120 3.24223 3.31597 3.35680 3.47889 3.86249 4.33271 4.81770 4.86583 4.95295 5.10696 5.13166 5.20996 5.22292 5.39124 5.51052 5.55981 5.72132 5.74350 5.80969 5.93684 6.07268 6.16883 6.22461 6.26953 6.44550 6.53745 6.57014 6.66405 6.78301 6.92178 6.97130 7.16730 7.49189 7.55915 7.59168 7.77240 7.86630 7.93200 8.24399 8.78152 9.44242 9.59171 10.90510 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030414 B = 0.004398 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.396566 B = 6365.570337 C = 6762.710633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.296 6.296 3 C 0.151 3.849 4 C -0.216 4.216 5 C -0.088 4.088 6 C -0.162 4.162 7 C -0.078 4.078 8 C -0.098 4.098 9 C 0.097 3.903 10 N -0.515 5.515 11 C 0.046 3.954 12 C -0.145 4.145 13 C 0.253 3.747 14 O -0.578 6.578 15 C -0.535 4.535 16 H 0.060 0.940 17 C 0.072 3.928 18 N -0.895 5.895 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.061 3.939 24 H 0.048 0.952 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.034 0.966 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.375 0.625 38 H 0.266 0.734 39 H 0.070 0.930 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.036 10.872 -8.883 16.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.208 6.208 3 C 0.105 3.895 4 C -0.235 4.235 5 C -0.106 4.106 6 C -0.181 4.181 7 C -0.097 4.097 8 C -0.099 4.099 9 C -0.031 4.031 10 N -0.239 5.239 11 C -0.081 4.081 12 C -0.184 4.184 13 C 0.212 3.788 14 O -0.386 6.386 15 C -0.573 4.573 16 H 0.079 0.921 17 C -0.131 4.131 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.066 4.066 24 H 0.067 0.933 25 H 0.116 0.884 26 H 0.071 0.929 27 H 0.142 0.858 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.224 0.776 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.819 10.700 -9.045 17.109 hybrid contribution 1.737 -0.447 0.230 1.808 sum -8.082 10.253 -8.815 15.753 Atomic orbital electron populations 1.23013 0.79269 1.03772 1.00649 1.86234 1.20393 1.26309 1.87872 1.18815 0.91741 0.84178 0.94771 1.21186 0.99752 0.92506 1.10029 1.20830 0.94626 0.96704 0.98471 1.20950 0.93900 0.98101 1.05128 1.20920 0.99732 0.91187 0.97844 1.19277 0.90856 0.95580 1.04231 1.21000 0.96281 0.92953 0.92895 1.63557 1.51867 1.02647 1.05809 1.22840 0.93871 0.95954 0.95484 1.23258 0.96738 0.96886 1.01494 1.19605 0.84994 0.90644 0.83528 1.86152 1.38372 1.94786 1.19267 1.21557 1.17528 1.16916 1.01339 0.92147 1.24994 0.96864 0.96109 0.95101 1.69746 1.39204 1.39641 1.04843 0.86493 0.81236 0.82178 0.77476 1.20630 1.21075 1.19764 1.23052 0.97989 0.87646 0.97924 0.93315 0.88395 0.92887 0.85842 0.86329 0.86296 0.85783 0.94391 0.90481 0.92081 0.94717 0.92780 0.90583 0.77571 0.92450 0.91189 0.93750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.30 -4.63 9.83 -19.43 -0.19 -4.82 16 3 C 0.15 2.32 6.66 -39.22 -0.26 2.06 16 4 C -0.22 -2.76 9.04 -39.44 -0.36 -3.12 16 5 C -0.09 -1.03 10.04 -39.61 -0.40 -1.43 16 6 C -0.16 -1.97 10.04 -39.56 -0.40 -2.36 16 7 C -0.08 -1.08 9.32 -39.61 -0.37 -1.45 16 8 C -0.10 -1.56 5.07 -104.48 -0.53 -2.09 16 9 C 0.10 1.69 4.33 -4.98 -0.02 1.67 16 10 N -0.52 -10.65 5.11 -232.37 -1.19 -11.83 16 11 C 0.05 0.96 6.52 -2.83 -0.02 0.94 16 12 C -0.14 -3.44 5.36 -24.91 -0.13 -3.58 16 13 C 0.25 6.46 0.88 -89.38 -0.08 6.39 16 14 O -0.58 -15.66 13.16 -35.23 -0.46 -16.13 16 15 C -0.53 -14.62 8.29 -34.44 -0.29 -14.90 16 16 H 0.06 1.64 7.79 -52.49 -0.41 1.23 16 17 C 0.07 1.92 5.29 -17.82 -0.09 1.83 16 18 N -0.89 -24.27 10.75 55.43 0.60 -23.67 16 19 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.06 1.39 5.84 -2.04 -0.01 1.38 16 24 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 25 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.53 7.65 -51.93 -0.40 0.14 16 27 H 0.12 1.29 6.30 -52.48 -0.33 0.96 16 28 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 29 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 30 H 0.12 1.55 8.00 -52.49 -0.42 1.13 16 31 H 0.04 0.63 7.58 -51.93 -0.39 0.24 16 32 H 0.08 1.32 7.86 -51.93 -0.41 0.92 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.03 0.65 7.02 -51.93 -0.36 0.28 16 35 H 0.05 1.31 8.03 -51.93 -0.42 0.89 16 36 H 0.08 1.92 7.53 -51.93 -0.39 1.53 16 37 H 0.38 10.17 7.57 45.56 0.34 10.52 16 38 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 40 H 0.04 0.97 7.71 -51.93 -0.40 0.57 16 LS Contribution 325.76 15.07 4.91 4.91 Total: -1.00 -29.72 325.76 -8.56 -38.27 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -5.23 Total: 10.78 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -1.96 Total: -13.37 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.59 Total: -35.51 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.65 Total: -20.94 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.72 -8.56 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.980 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds