Wall clock time and date at job start Mon Mar 30 2020 01:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 117.00134 * 2 1 4 4 C 1.38754 * 120.05742 * 0.25042 * 3 2 1 5 5 C 1.38113 * 119.94782 * 180.27755 * 4 3 2 6 6 C 1.38289 * 120.05490 * 359.72072 * 5 4 3 7 7 C 1.38250 * 120.11178 * 0.02716 * 6 5 4 8 8 C 1.38161 * 120.05024 * 359.97309 * 7 6 5 9 9 C 1.50701 * 120.02433 * 180.02562 * 8 7 6 10 10 N 1.46894 * 109.47324 * 105.28312 * 9 8 7 11 11 C 1.47443 * 111.00125 * 284.38026 * 10 9 8 12 12 C 1.54322 * 107.23286 * 236.73908 * 11 10 9 13 13 C 1.55134 * 103.17742 * 337.63181 * 12 11 10 14 14 O 1.42905 * 110.99048 * 277.64655 * 13 12 11 15 15 C 1.50699 * 110.99225 * 153.83004 * 13 12 11 16 16 H 1.07996 * 120.00320 * 241.44929 * 15 13 12 17 17 C 1.37882 * 119.99835 * 61.45461 * 15 13 12 18 18 N 1.31514 * 120.00141 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99929 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47567 * 89.99659 * 19 17 15 21 21 H 1.48503 * 109.47143 * 209.99804 * 19 17 15 22 22 H 1.48504 * 109.47079 * 329.99460 * 19 17 15 23 23 C 1.47853 * 111.00196 * 163.53751 * 10 9 8 24 24 H 1.09003 * 109.46805 * 60.00349 * 1 2 3 25 25 H 1.09000 * 109.47105 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47245 * 300.00561 * 1 2 3 27 27 H 1.08007 * 120.02726 * 0.02562 * 4 3 2 28 28 H 1.08005 * 119.97802 * 179.74315 * 5 4 3 29 29 H 1.08006 * 119.94541 * 180.02562 * 6 5 4 30 30 H 1.07998 * 119.96923 * 179.97438 * 7 6 5 31 31 H 1.09005 * 109.47485 * 345.28492 * 9 8 7 32 32 H 1.09002 * 109.46994 * 225.28515 * 9 8 7 33 33 H 1.08999 * 109.89082 * 117.33656 * 11 10 9 34 34 H 1.08996 * 109.89090 * 356.14378 * 11 10 9 35 35 H 1.09002 * 110.70035 * 96.09988 * 12 11 10 36 36 H 1.08997 * 110.70754 * 219.15733 * 12 11 10 37 37 H 0.96698 * 114.00193 * 298.54651 * 14 13 12 38 38 H 0.96999 * 120.00444 * 180.02562 * 18 17 15 39 39 H 1.09004 * 110.36873 * 265.19661 * 23 10 9 40 40 H 1.08998 * 110.37058 * 27.42206 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0052 5 6 1.9209 3.6047 -0.0006 6 6 3.3019 3.6758 -0.0058 7 6 4.0560 2.5170 -0.0057 8 6 3.4311 1.2849 0.0001 9 6 4.2537 0.0222 0.0007 10 7 4.2200 -0.5836 1.3385 11 6 5.0862 0.1555 2.2752 12 6 6.1012 -0.8534 2.8525 13 6 5.3967 -2.2203 2.6473 14 8 4.4604 -2.4762 3.6961 15 6 6.4040 -3.3363 2.5416 16 1 6.4647 -3.9252 1.6384 17 6 7.2480 -3.6055 3.5982 18 7 7.1744 -2.8881 4.6980 19 14 8.4970 -4.9882 3.4669 20 1 9.7672 -4.4569 2.9106 21 1 8.7474 -5.5587 4.8150 22 1 7.9694 -6.0485 2.5710 23 6 4.6685 -1.9918 1.2940 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2128 2.3204 0.0098 28 1 1.3340 4.5114 -0.0007 29 1 3.7923 4.6381 -0.0099 30 1 5.1344 2.5752 -0.0102 31 1 5.2840 0.2595 -0.2648 32 1 3.8435 -0.6790 -0.7261 33 1 4.4855 0.5790 3.0802 34 1 5.6128 0.9494 1.7456 35 1 7.0391 -0.8162 2.2984 36 1 6.2732 -0.6637 3.9119 37 1 4.8591 -2.5263 4.5757 38 1 7.7684 -3.0772 5.4411 39 1 3.8118 -2.6602 1.2068 40 1 5.3549 -2.1452 0.4614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592523646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:53 Heat of formation + Delta-G solvation = -73.863044 kcal Electronic energy + Delta-G solvation = -21984.989380 eV Core-core repulsion = 18764.168096 eV Total energy + Delta-G solvation = -3220.821284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.17439 -39.89483 -38.21829 -36.55513 -34.18271 -33.28354 -31.06557 -30.50269 -29.84190 -28.12845 -27.05572 -25.58784 -22.99856 -22.60413 -21.41521 -21.36727 -19.04446 -18.74414 -17.26634 -16.89597 -16.77689 -16.64214 -16.53171 -16.05645 -15.74192 -15.35120 -14.70729 -14.64720 -14.38067 -13.84680 -13.78958 -13.47467 -13.33006 -13.13919 -12.91910 -12.83043 -12.67985 -12.55646 -12.26545 -12.17629 -12.16604 -11.90353 -11.62178 -11.56631 -11.07068 -10.60278 -10.08762 -9.76718 -9.10051 -8.97930 -8.21027 -6.37384 0.42361 0.59722 1.40017 1.42210 1.52171 2.38361 2.54687 2.82081 3.03277 3.35731 3.80540 3.92015 4.01802 4.09762 4.21075 4.24189 4.33732 4.41505 4.44036 4.47192 4.54902 4.61463 4.67610 4.76395 4.77251 4.87298 4.91706 5.07874 5.13148 5.27559 5.48106 5.48346 5.54093 5.55708 5.65106 5.80297 5.97075 6.00982 6.25173 6.33743 6.62624 6.68553 7.34273 7.46086 8.84352 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030414 B = 0.004398 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.396566 B = 6365.570337 C = 6762.710633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.329 6.329 3 C 0.130 3.870 4 C -0.219 4.219 5 C -0.083 4.083 6 C -0.163 4.163 7 C -0.086 4.086 8 C -0.128 4.128 9 C 0.101 3.899 10 N -0.521 5.521 11 C 0.059 3.941 12 C -0.134 4.134 13 C 0.236 3.764 14 O -0.589 6.589 15 C -0.563 4.563 16 H 0.054 0.946 17 C 0.032 3.968 18 N -0.911 5.911 19 Si 0.961 3.039 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.273 1.273 23 C 0.069 3.931 24 H 0.070 0.930 25 H 0.106 0.894 26 H 0.058 0.942 27 H 0.146 0.854 28 H 0.152 0.848 29 H 0.147 0.853 30 H 0.133 0.867 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.371 0.629 38 H 0.269 0.731 39 H 0.057 0.943 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.367 12.469 -9.671 18.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.242 6.242 3 C 0.084 3.916 4 C -0.237 4.237 5 C -0.101 4.101 6 C -0.181 4.181 7 C -0.104 4.104 8 C -0.129 4.129 9 C -0.026 4.026 10 N -0.244 5.244 11 C -0.069 4.069 12 C -0.173 4.173 13 C 0.196 3.804 14 O -0.396 6.396 15 C -0.601 4.601 16 H 0.072 0.928 17 C -0.169 4.169 18 N -0.550 5.550 19 Si 0.786 3.214 20 H -0.199 1.199 21 H -0.205 1.205 22 H -0.197 1.197 23 C -0.058 4.058 24 H 0.088 0.912 25 H 0.124 0.876 26 H 0.077 0.923 27 H 0.163 0.837 28 H 0.170 0.830 29 H 0.164 0.836 30 H 0.151 0.849 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.219 0.781 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.163 12.311 -9.847 18.756 hybrid contribution 1.766 -0.891 0.464 2.032 sum -8.396 11.421 -9.383 16.999 Atomic orbital electron populations 1.23247 0.77259 1.04875 1.01930 1.86174 1.22710 1.27150 1.88171 1.19080 0.91944 0.84946 0.95638 1.21491 1.00898 0.92084 1.09247 1.21283 0.94868 0.97503 0.96481 1.21312 0.94286 0.98609 1.03874 1.21115 1.00465 0.91133 0.97732 1.19262 0.91284 0.95340 1.06991 1.20971 0.97093 0.93803 0.90755 1.63501 1.51533 1.01564 1.07848 1.22685 0.93049 0.95626 0.95529 1.23054 0.96990 0.97014 1.00270 1.19851 0.85216 0.91142 0.84165 1.86144 1.39078 1.94972 1.19388 1.21808 1.18728 1.17962 1.01609 0.92793 1.25695 0.98366 0.98154 0.94704 1.69835 1.39593 1.40431 1.05156 0.85524 0.79018 0.79340 0.77517 1.19885 1.20522 1.19746 1.22878 0.97235 0.89091 0.96596 0.91187 0.87555 0.92297 0.83672 0.83023 0.83553 0.84930 0.93727 0.90978 0.92812 0.92307 0.93606 0.92520 0.78111 0.92200 0.92445 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 16 2 O -0.33 -10.20 9.83 -92.44 -0.91 -11.11 16 3 C 0.13 3.86 6.66 22.51 0.15 4.01 16 4 C -0.22 -5.05 9.04 22.36 0.20 -4.85 16 5 C -0.08 -1.65 10.04 22.25 0.22 -1.43 16 6 C -0.16 -3.42 10.04 22.28 0.22 -3.19 16 7 C -0.09 -2.21 9.32 22.25 0.21 -2.00 16 8 C -0.13 -3.94 5.07 -19.77 -0.10 -4.04 16 9 C 0.10 3.52 4.33 85.56 0.37 3.89 16 10 N -0.52 -21.63 5.11 -889.09 -4.54 -26.17 16 11 C 0.06 2.44 6.52 86.65 0.57 3.01 16 12 C -0.13 -6.48 5.36 31.77 0.17 -6.31 16 13 C 0.24 12.35 0.88 -9.99 -0.01 12.34 16 14 O -0.59 -32.75 13.16 -148.98 -1.96 -34.71 16 15 C -0.56 -31.26 8.29 25.60 0.21 -31.05 16 16 H 0.05 2.98 7.79 -2.91 -0.02 2.96 16 17 C 0.03 1.70 5.29 84.66 0.45 2.15 16 18 N -0.91 -49.83 10.75 21.45 0.23 -49.60 16 19 Si 0.96 42.83 29.54 68.60 2.03 44.86 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 C 0.07 3.23 5.84 86.94 0.51 3.74 16 24 H 0.07 1.10 7.67 -2.39 -0.02 1.08 16 25 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.06 1.11 7.65 -2.39 -0.02 1.09 16 27 H 0.15 2.59 6.30 -2.91 -0.02 2.57 16 28 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 29 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 30 H 0.13 3.05 8.00 -2.91 -0.02 3.03 16 31 H 0.04 1.46 7.58 -2.38 -0.02 1.44 16 32 H 0.07 2.52 7.86 -2.39 -0.02 2.50 16 33 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.06 2.14 7.02 -2.39 -0.02 2.12 16 35 H 0.05 2.24 8.03 -2.39 -0.02 2.22 16 36 H 0.06 2.92 7.53 -2.39 -0.02 2.90 16 37 H 0.37 20.75 7.57 -74.06 -0.56 20.19 16 38 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 39 H 0.06 2.77 8.14 -2.38 -0.02 2.75 16 40 H 0.05 2.20 7.71 -2.39 -0.02 2.18 16 Total: -1.00 -63.95 325.76 -0.40 -64.35 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: 0.47 Total: 34.58 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 4.28 Total: -22.19 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -4.31 Total: -75.77 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -2.87 Total: -45.82 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -63.95 -0.40 -64.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.515 kcal (2) G-P(sol) polarization free energy of solvation -63.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds