Wall clock time and date at job start Mon Mar 30 2020 01:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38777 * 120.02101 * 179.72187 * 3 2 1 5 5 C 1.38177 * 120.04764 * 179.78997 * 4 3 2 6 6 C 1.50704 * 119.94434 * 180.23231 * 5 4 3 7 7 N 1.46898 * 109.47175 * 270.23591 * 6 5 4 8 8 C 1.47479 * 110.99772 * 265.96866 * 7 6 5 9 9 C 1.53515 * 87.92854 * 221.29594 * 8 7 6 10 10 C 1.50701 * 114.34047 * 139.68328 * 9 8 7 11 11 H 1.07997 * 120.00466 * 266.07655 * 10 9 8 12 12 C 1.37885 * 119.99956 * 86.07538 * 10 9 8 13 13 N 1.31513 * 119.99987 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00043 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46754 * 90.00314 * 14 12 10 16 16 H 1.48500 * 109.47280 * 210.00075 * 14 12 10 17 17 H 1.48497 * 109.47213 * 330.00504 * 14 12 10 18 18 C 1.47482 * 110.99822 * 169.99706 * 7 6 5 19 19 C 1.38174 * 120.11281 * 0.46781 * 5 4 3 20 20 C 1.38775 * 120.05268 * 359.78784 * 19 5 4 21 21 O 1.35902 * 120.02669 * 179.97438 * 20 19 5 22 22 C 1.42898 * 117.00078 * 180.02562 * 21 20 19 23 23 C 1.38630 * 119.94628 * 359.97438 * 20 19 5 24 24 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47043 * 300.00197 * 1 2 3 26 26 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 27 27 H 1.07996 * 119.97413 * 0.02562 * 4 3 2 28 28 H 1.09006 * 109.46615 * 30.23716 * 6 5 4 29 29 H 1.08994 * 109.47000 * 150.23289 * 6 5 4 30 30 H 1.08998 * 113.47898 * 336.06026 * 8 7 6 31 31 H 1.09000 * 113.47671 * 106.53436 * 8 7 6 32 32 H 1.08993 * 114.17292 * 272.37308 * 9 8 7 33 33 H 0.96998 * 120.00455 * 179.97438 * 13 12 10 34 34 H 1.09004 * 113.47623 * 253.47053 * 18 7 6 35 35 H 1.08999 * 113.47885 * 23.93463 * 18 7 6 36 36 H 1.07998 * 119.97581 * 179.76368 * 19 5 4 37 37 H 1.09000 * 109.46782 * 59.99906 * 22 21 20 38 38 H 1.08994 * 109.47222 * 179.97438 * 22 21 20 39 39 H 1.08996 * 109.47248 * 300.00331 * 22 21 20 40 40 H 1.07999 * 120.05796 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4317 1.2842 0.0058 5 6 4.0596 2.5151 0.0015 6 6 5.5646 2.5919 0.0025 7 7 6.0527 2.6167 1.3878 8 6 6.2495 4.0020 1.8541 9 6 7.5481 3.5327 2.5249 10 6 8.6961 4.5011 2.4015 11 1 9.4068 4.3962 1.5952 12 6 8.8391 5.5212 3.3181 13 7 7.9739 5.6487 4.3004 14 14 10.2625 6.7212 3.1656 15 1 9.8515 7.8718 2.3216 16 1 10.6455 7.2089 4.5149 17 1 11.4219 6.0368 2.5391 18 6 7.5175 2.4520 1.4351 19 6 3.3098 3.6757 0.0010 20 6 1.9237 3.6077 0.0005 21 8 1.1868 4.7495 0.0006 22 6 -0.2348 4.6042 0.0007 23 6 1.2914 2.3740 0.0000 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 4.0199 0.3785 0.0100 28 1 5.9731 1.7216 -0.5112 29 1 5.8825 3.4992 -0.5110 30 1 6.4116 4.7137 1.0446 31 1 5.4902 4.3338 2.5623 32 1 7.4147 3.1501 3.5368 33 1 8.0747 6.3661 4.9455 34 1 7.8329 1.4701 1.7882 35 1 8.0180 2.7501 0.5138 36 1 3.8028 4.6366 0.0014 37 1 -0.5439 4.0560 0.8907 38 1 -0.7008 5.5895 0.0012 39 1 -0.5441 4.0561 -0.8892 40 1 0.2128 2.3189 -0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597190798.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:00 Heat of formation + Delta-G solvation = -12.283023 kcal Electronic energy + Delta-G solvation = -21127.424756 eV Core-core repulsion = 17909.273783 eV Total energy + Delta-G solvation = -3218.150973 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.52462 -38.94330 -38.82199 -36.65287 -32.80268 -31.49135 -30.26053 -28.63942 -27.85348 -26.67099 -25.46636 -24.70634 -22.67891 -22.32174 -20.63987 -18.57907 -18.28148 -17.00480 -16.54962 -16.02027 -15.93700 -15.89797 -15.56237 -14.84435 -14.80877 -14.48289 -14.01279 -13.87821 -13.35112 -12.82851 -12.65412 -12.25224 -12.03855 -11.90731 -11.69037 -11.61936 -11.32479 -11.16840 -11.05183 -10.90537 -10.60952 -10.48331 -10.23041 -9.71293 -9.25400 -8.91677 -8.48695 -8.37455 -7.96979 -7.87916 -6.02554 -4.07223 1.41846 1.60573 3.17213 3.23686 3.30735 3.37825 3.40685 3.83141 4.42705 4.72900 4.83215 4.87251 4.94182 4.97902 5.07252 5.16187 5.23145 5.24841 5.27428 5.29815 5.35671 5.51271 5.66150 5.91962 5.97596 6.17556 6.29340 6.32961 6.39579 6.50494 6.70711 6.71798 6.75577 6.80291 7.15060 7.20530 7.23935 7.52185 7.75646 7.93758 8.09916 8.40207 8.96077 9.57676 11.06992 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024384 B = 0.003795 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.021430 B = 7376.148168 C = 8119.859386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.158 3.842 4 C -0.169 4.169 5 C 0.018 3.982 6 C 0.054 3.946 7 N -0.477 5.477 8 C 0.006 3.994 9 C 0.041 3.959 10 C -0.517 4.517 11 H 0.058 0.942 12 C 0.067 3.933 13 N -0.885 5.885 14 Si 0.891 3.109 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.005 4.005 19 C -0.174 4.174 20 C 0.161 3.839 21 O -0.314 6.314 22 C 0.029 3.971 23 C -0.302 4.302 24 H 0.098 0.902 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.131 0.869 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.262 0.738 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.131 0.869 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.052 0.948 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.565 -6.749 -10.063 20.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.113 3.887 4 C -0.189 4.189 5 C 0.017 3.983 6 C -0.074 4.074 7 N -0.199 5.199 8 C -0.123 4.123 9 C 0.022 3.978 10 C -0.555 4.555 11 H 0.076 0.924 12 C -0.136 4.136 13 N -0.523 5.523 14 Si 0.718 3.282 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.134 4.134 19 C -0.194 4.194 20 C 0.116 3.884 21 O -0.227 6.227 22 C -0.067 4.067 23 C -0.322 4.322 24 H 0.117 0.883 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.149 0.851 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.149 0.851 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.070 0.930 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.927 -7.103 -9.566 20.700 hybrid contribution 0.475 1.282 -0.569 1.481 sum -16.452 -5.821 -10.136 20.181 Atomic orbital electron populations 1.23008 0.78871 1.03686 1.01104 1.86084 1.21018 1.27042 1.88709 1.18670 0.91999 0.83319 0.94719 1.20160 0.90716 0.98430 1.09550 1.19370 0.95525 0.91024 0.92388 1.21665 0.90068 1.01658 0.94006 1.68932 1.14284 1.21463 1.15260 1.24130 1.01009 0.88092 0.99063 1.20095 0.92263 0.91492 0.93946 1.21035 1.10680 1.11888 1.11890 0.92405 1.25021 0.95992 0.97686 0.94902 1.69970 1.35684 1.31991 1.14616 0.86622 0.82790 0.81379 0.77376 1.20658 1.21175 1.19825 1.24033 0.87728 1.00878 1.00756 1.20265 0.90107 0.99491 1.09502 1.18666 0.91061 0.84284 0.94412 1.86109 1.18812 1.29192 1.88578 1.23013 0.78961 1.03660 1.01026 1.21113 0.99979 0.92070 1.19049 0.88346 0.92816 0.92961 0.85142 0.90574 0.92732 0.92765 0.91789 0.91790 0.92873 0.91866 0.92691 0.85121 0.92827 0.88298 0.92973 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.09 10.50 -19.44 -0.20 -4.29 16 3 C 0.16 2.29 6.68 -39.24 -0.26 2.03 16 4 C -0.17 -2.65 9.64 -39.40 -0.38 -3.03 16 5 C 0.02 0.30 5.46 -104.67 -0.57 -0.28 16 6 C 0.05 0.94 4.94 -4.97 -0.02 0.91 16 7 N -0.48 -9.82 6.32 -246.08 -1.55 -11.37 16 8 C 0.01 0.14 7.28 -7.54 -0.05 0.08 16 9 C 0.04 1.04 3.76 -91.24 -0.34 0.70 16 10 C -0.52 -14.10 8.83 -34.44 -0.30 -14.40 16 11 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 12 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 13 N -0.89 -25.75 13.26 55.43 0.74 -25.01 16 14 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 18 C -0.01 -0.11 7.25 -7.54 -0.05 -0.17 16 19 C -0.17 -2.89 9.64 -39.41 -0.38 -3.27 16 20 C 0.16 2.44 6.68 -39.24 -0.26 2.18 16 21 O -0.31 -4.38 10.50 -19.43 -0.20 -4.58 16 22 C 0.03 0.26 9.81 101.05 0.99 1.25 16 23 C -0.30 -4.07 8.02 -39.29 -0.32 -4.38 16 24 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 26 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 27 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 28 H 0.08 1.18 8.02 -51.93 -0.42 0.76 16 29 H 0.05 0.93 7.24 -51.93 -0.38 0.56 16 30 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 31 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.06 1.78 8.11 -51.93 -0.42 1.36 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.05 1.12 7.87 -51.93 -0.41 0.71 16 36 H 0.13 2.20 8.06 -52.49 -0.42 1.77 16 37 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 40 H 0.13 1.35 4.54 -52.49 -0.24 1.11 16 LS Contribution 333.30 15.07 5.02 5.02 Total: -1.00 -30.73 333.30 -8.21 -38.93 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -5.92 Total: 0.60 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -1.07 Total: -15.40 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.82 Total: -36.38 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.41 Total: -8.87 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.73 -8.21 -38.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597190798.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.651 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds