Wall clock time and date at job start Mon Mar 30 2020 01:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38777 * 120.02101 * 179.72187 * 3 2 1 5 5 C 1.38177 * 120.04764 * 179.78997 * 4 3 2 6 6 C 1.50704 * 119.94434 * 180.23231 * 5 4 3 7 7 N 1.46898 * 109.47175 * 270.23591 * 6 5 4 8 8 C 1.47479 * 110.99772 * 265.96866 * 7 6 5 9 9 C 1.53515 * 87.92854 * 221.29594 * 8 7 6 10 10 C 1.50701 * 114.34047 * 139.68328 * 9 8 7 11 11 H 1.07997 * 120.00466 * 266.07655 * 10 9 8 12 12 C 1.37885 * 119.99956 * 86.07538 * 10 9 8 13 13 N 1.31513 * 119.99987 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00043 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46754 * 90.00314 * 14 12 10 16 16 H 1.48500 * 109.47280 * 210.00075 * 14 12 10 17 17 H 1.48497 * 109.47213 * 330.00504 * 14 12 10 18 18 C 1.47482 * 110.99822 * 169.99706 * 7 6 5 19 19 C 1.38174 * 120.11281 * 0.46781 * 5 4 3 20 20 C 1.38775 * 120.05268 * 359.78784 * 19 5 4 21 21 O 1.35902 * 120.02669 * 179.97438 * 20 19 5 22 22 C 1.42898 * 117.00078 * 180.02562 * 21 20 19 23 23 C 1.38630 * 119.94628 * 359.97438 * 20 19 5 24 24 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47043 * 300.00197 * 1 2 3 26 26 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 27 27 H 1.07996 * 119.97413 * 0.02562 * 4 3 2 28 28 H 1.09006 * 109.46615 * 30.23716 * 6 5 4 29 29 H 1.08994 * 109.47000 * 150.23289 * 6 5 4 30 30 H 1.08998 * 113.47898 * 336.06026 * 8 7 6 31 31 H 1.09000 * 113.47671 * 106.53436 * 8 7 6 32 32 H 1.08993 * 114.17292 * 272.37308 * 9 8 7 33 33 H 0.96998 * 120.00455 * 179.97438 * 13 12 10 34 34 H 1.09004 * 113.47623 * 253.47053 * 18 7 6 35 35 H 1.08999 * 113.47885 * 23.93463 * 18 7 6 36 36 H 1.07998 * 119.97581 * 179.76368 * 19 5 4 37 37 H 1.09000 * 109.46782 * 59.99906 * 22 21 20 38 38 H 1.08994 * 109.47222 * 179.97438 * 22 21 20 39 39 H 1.08996 * 109.47248 * 300.00331 * 22 21 20 40 40 H 1.07999 * 120.05796 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4317 1.2842 0.0058 5 6 4.0596 2.5151 0.0015 6 6 5.5646 2.5919 0.0025 7 7 6.0527 2.6167 1.3878 8 6 6.2495 4.0020 1.8541 9 6 7.5481 3.5327 2.5249 10 6 8.6961 4.5011 2.4015 11 1 9.4068 4.3962 1.5952 12 6 8.8391 5.5212 3.3181 13 7 7.9739 5.6487 4.3004 14 14 10.2625 6.7212 3.1656 15 1 9.8515 7.8718 2.3216 16 1 10.6455 7.2089 4.5149 17 1 11.4219 6.0368 2.5391 18 6 7.5175 2.4520 1.4351 19 6 3.3098 3.6757 0.0010 20 6 1.9237 3.6077 0.0005 21 8 1.1868 4.7495 0.0006 22 6 -0.2348 4.6042 0.0007 23 6 1.2914 2.3740 0.0000 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 4.0199 0.3785 0.0100 28 1 5.9731 1.7216 -0.5112 29 1 5.8825 3.4992 -0.5110 30 1 6.4116 4.7137 1.0446 31 1 5.4902 4.3338 2.5623 32 1 7.4147 3.1501 3.5368 33 1 8.0747 6.3661 4.9455 34 1 7.8329 1.4701 1.7882 35 1 8.0180 2.7501 0.5138 36 1 3.8028 4.6366 0.0014 37 1 -0.5439 4.0560 0.8907 38 1 -0.7008 5.5895 0.0012 39 1 -0.5441 4.0561 -0.8892 40 1 0.2128 2.3189 -0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597190798.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:59 Heat of formation + Delta-G solvation = -33.290520 kcal Electronic energy + Delta-G solvation = -21128.335710 eV Core-core repulsion = 17909.273783 eV Total energy + Delta-G solvation = -3219.061927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.61931 -40.61059 -39.78745 -37.80582 -34.77340 -32.91649 -31.29286 -30.07489 -28.84708 -27.48911 -27.19582 -26.49849 -24.33093 -23.42549 -21.82571 -20.46184 -19.39908 -18.53040 -17.96872 -17.04685 -17.02017 -16.94900 -16.68399 -16.40019 -16.29270 -15.75805 -15.66440 -15.29321 -14.55452 -14.10049 -13.93078 -13.49557 -13.42182 -13.20172 -13.16501 -12.91631 -12.73058 -12.47236 -12.39221 -12.23754 -12.17252 -11.96546 -11.63689 -11.50909 -11.09852 -10.85116 -10.49050 -9.74663 -9.55795 -9.00976 -8.13668 -6.25388 0.25935 0.45049 1.43936 1.44414 1.55313 2.24742 2.33687 2.43656 2.65499 3.15500 3.45118 3.71757 3.92378 4.02736 4.07395 4.17851 4.30643 4.32885 4.34224 4.37506 4.38885 4.45409 4.51328 4.59334 4.67176 4.71182 4.74403 4.82024 4.89421 4.98132 5.18327 5.21170 5.25124 5.40030 5.58650 5.63980 5.66603 5.86190 6.19585 6.30234 6.37869 6.50865 6.84563 7.43268 8.96246 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024384 B = 0.003795 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.021430 B = 7376.148168 C = 8119.859386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.159 3.841 4 C -0.184 4.184 5 C 0.006 3.994 6 C 0.057 3.943 7 N -0.477 5.477 8 C 0.020 3.980 9 C 0.020 3.980 10 C -0.530 4.530 11 H 0.062 0.938 12 C 0.013 3.987 13 N -0.923 5.923 14 Si 0.959 3.041 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.263 1.263 18 C 0.011 3.989 19 C -0.200 4.200 20 C 0.157 3.843 21 O -0.335 6.335 22 C 0.016 3.984 23 C -0.294 4.294 24 H 0.123 0.877 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.135 0.865 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.029 0.971 33 H 0.262 0.738 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.116 0.884 37 H 0.063 0.937 38 H 0.120 0.880 39 H 0.070 0.930 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.768 -7.406 -11.444 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.114 3.886 4 C -0.203 4.203 5 C 0.005 3.995 6 C -0.071 4.071 7 N -0.199 5.199 8 C -0.109 4.109 9 C 0.001 3.999 10 C -0.568 4.568 11 H 0.081 0.919 12 C -0.186 4.186 13 N -0.562 5.562 14 Si 0.784 3.216 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.187 1.187 18 C -0.118 4.118 19 C -0.219 4.219 20 C 0.112 3.888 21 O -0.248 6.248 22 C -0.078 4.078 23 C -0.313 4.313 24 H 0.141 0.859 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.153 0.847 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.134 0.866 37 H 0.082 0.918 38 H 0.138 0.862 39 H 0.089 0.911 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -18.146 -7.776 -10.965 22.582 hybrid contribution 0.665 1.419 -0.155 1.575 sum -17.480 -6.357 -11.119 21.671 Atomic orbital electron populations 1.23392 0.76334 1.05847 1.02248 1.86078 1.23642 1.26175 1.88300 1.18741 0.91837 0.84311 0.93760 1.20258 0.91781 0.98082 1.10191 1.19268 0.94972 0.91563 0.93693 1.21678 0.90943 1.02629 0.91866 1.68841 1.14026 1.19109 1.17962 1.23828 0.99099 0.89613 0.98362 1.20045 0.92977 0.93308 0.93535 1.21391 1.11214 1.12252 1.11944 0.91941 1.25863 0.98604 0.99559 0.94571 1.70108 1.37648 1.32866 1.15577 0.85543 0.79674 0.79017 0.77356 1.20074 1.21030 1.18738 1.23866 0.88219 1.00124 0.99547 1.20293 0.91365 0.98959 1.11330 1.18738 0.90782 0.85371 0.93946 1.86088 1.21338 1.29059 1.88352 1.23389 0.76347 1.05655 1.02362 1.21362 1.01542 0.90900 1.17535 0.85895 0.91969 0.91390 0.84746 0.88369 0.92755 0.92932 0.94286 0.95321 0.92897 0.90444 0.91411 0.86590 0.91828 0.86189 0.91131 0.82113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -7.76 10.50 -92.48 -0.97 -8.73 16 3 C 0.16 4.36 6.68 22.49 0.15 4.52 16 4 C -0.18 -5.64 9.64 22.38 0.22 -5.42 16 5 C 0.01 0.19 5.46 -19.89 -0.11 0.08 16 6 C 0.06 1.94 4.94 85.56 0.42 2.36 16 7 N -0.48 -19.78 6.32 -932.45 -5.89 -25.67 16 8 C 0.02 0.98 7.28 83.58 0.61 1.59 16 9 C 0.02 1.06 3.76 -11.19 -0.04 1.02 16 10 C -0.53 -29.29 8.83 25.60 0.23 -29.06 16 11 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16 12 C 0.01 0.74 5.46 84.66 0.46 1.21 16 13 N -0.92 -55.20 13.26 21.45 0.28 -54.92 16 14 Si 0.96 43.62 29.54 68.60 2.03 45.64 16 15 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 18 C 0.01 0.46 7.25 83.58 0.61 1.06 16 19 C -0.20 -6.76 9.64 22.38 0.22 -6.55 16 20 C 0.16 4.66 6.68 22.49 0.15 4.81 16 21 O -0.33 -9.02 10.50 -92.44 -0.97 -9.99 16 22 C 0.02 0.25 9.81 113.37 1.11 1.37 16 23 C -0.29 -7.32 8.02 22.46 0.18 -7.14 16 24 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 26 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 27 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 28 H 0.10 2.90 8.02 -2.38 -0.02 2.88 16 29 H 0.05 1.86 7.24 -2.39 -0.02 1.84 16 30 H 0.05 2.51 7.38 -2.39 -0.02 2.49 16 31 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.03 1.67 8.11 -2.39 -0.02 1.65 16 33 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.08 3.02 8.14 -2.38 -0.02 3.00 16 35 H 0.07 2.67 7.87 -2.39 -0.02 2.65 16 36 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 37 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 38 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 0.83 7.66 -2.39 -0.02 0.82 16 40 H 0.16 2.81 4.54 -2.91 -0.01 2.80 16 Total: -1.00 -67.56 333.30 0.82 -66.75 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 1.02 Total: 15.74 kcal Atomic # 6 Polarization: -34.14 SS G_CDS: 5.31 Total: -28.83 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -5.60 Total: -80.58 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -1.94 Total: -18.71 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -67.56 0.82 -66.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597190798.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.455 kcal (2) G-P(sol) polarization free energy of solvation -67.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds