Wall clock time and date at job start Mon Mar 30 2020 01:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99904 * 2 1 4 4 C 1.38792 * 120.02621 * 0.02562 * 3 2 1 5 5 C 1.38165 * 120.05227 * 179.70908 * 4 3 2 6 6 C 1.38197 * 120.10751 * 0.54454 * 5 4 3 7 7 C 1.50702 * 119.97010 * 179.72528 * 6 5 4 8 8 N 1.46902 * 109.47267 * 259.72989 * 7 6 5 9 9 C 1.47961 * 111.00005 * 189.99947 * 8 7 6 10 10 C 1.53934 * 86.17939 * 137.58072 * 9 8 7 11 11 C 1.50703 * 113.73399 * 221.81705 * 10 9 8 12 12 H 1.07999 * 119.99920 * 358.09577 * 11 10 9 13 13 C 1.37877 * 119.99669 * 178.10223 * 11 10 9 14 14 N 1.31510 * 120.00506 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99624 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47293 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47387 * 119.99775 * 15 13 11 18 18 H 1.48498 * 109.47096 * 240.00236 * 15 13 11 19 19 C 1.48296 * 111.00409 * 289.35248 * 8 7 6 20 20 C 1.38746 * 120.05526 * 359.45530 * 6 5 4 21 21 O 1.35894 * 120.02896 * 180.24955 * 20 6 5 22 22 C 1.42900 * 117.00428 * 180.02562 * 21 20 6 23 23 C 1.38614 * 120.02938 * 179.97438 * 3 2 1 24 24 H 1.09004 * 109.46817 * 60.00525 * 1 2 3 25 25 H 1.09001 * 109.47013 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47433 * 300.00650 * 1 2 3 27 27 H 1.07998 * 119.97612 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.94384 * 180.27206 * 5 4 3 29 29 H 1.08997 * 109.47111 * 139.72755 * 7 6 5 30 30 H 1.09007 * 109.47191 * 19.72918 * 7 6 5 31 31 H 1.09007 * 113.75652 * 23.26342 * 9 8 7 32 32 H 1.08992 * 113.86038 * 251.91266 * 9 8 7 33 33 H 1.09002 * 113.73279 * 90.64057 * 10 9 8 34 34 H 0.96995 * 120.00309 * 180.02562 * 14 13 11 35 35 H 1.09001 * 113.86054 * 108.14174 * 19 8 7 36 36 H 1.09000 * 113.76062 * 336.68481 * 19 8 7 37 37 H 1.09001 * 109.47066 * 59.99840 * 22 21 20 38 38 H 1.09001 * 109.47490 * 180.02562 * 22 21 20 39 39 H 1.08998 * 109.46842 * 300.00282 * 22 21 20 40 40 H 1.08002 * 120.05108 * 0.04047 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3752 0.0005 5 6 1.9172 3.6066 0.0066 6 6 3.2971 3.6822 0.0008 7 6 3.9774 5.0269 0.0012 8 7 4.4128 5.3558 -1.3627 9 6 5.2896 6.5477 -1.3665 10 6 6.1603 5.7767 -2.3749 11 6 7.6405 5.9121 -2.1263 12 1 7.9977 6.5340 -1.3188 13 6 8.5385 5.2421 -2.9298 14 7 8.1036 4.4853 -3.9134 15 14 10.3733 5.4105 -2.6220 16 1 10.6004 6.3140 -1.4656 17 1 10.9506 4.0743 -2.3276 18 1 11.0276 5.9775 -3.8284 19 6 5.5467 4.4962 -1.7805 20 6 4.0567 2.5211 0.0003 21 8 5.4135 2.5961 -0.0003 22 6 6.1316 1.3606 -0.0014 23 6 3.4301 1.2842 0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8898 27 1 0.2120 2.3187 0.0014 28 1 1.3277 4.5114 0.0115 29 1 4.8439 4.9955 0.6616 30 1 3.2797 5.7870 0.3531 31 1 5.7826 6.7332 -0.4122 32 1 4.8202 7.4390 -1.7828 33 1 5.8865 5.9524 -3.4153 34 1 8.7353 4.0137 -4.4784 35 1 5.2812 3.7485 -2.5279 36 1 6.1149 4.0829 -0.9471 37 1 5.8695 0.7888 -0.8916 38 1 7.2027 1.5629 -0.0013 39 1 5.8703 0.7878 0.8883 40 1 4.0197 0.3792 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597192842.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:04 Heat of formation + Delta-G solvation = -8.715050 kcal Electronic energy + Delta-G solvation = -21909.099838 eV Core-core repulsion = 18691.103583 eV Total energy + Delta-G solvation = -3217.996255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.47997 -39.03911 -38.12232 -36.39130 -32.77344 -31.51690 -30.19831 -28.39701 -27.24334 -26.95245 -25.13689 -24.73601 -22.57886 -21.96963 -20.60411 -18.57485 -18.44589 -16.82898 -16.41987 -16.05419 -15.86392 -15.41934 -15.36309 -14.73865 -14.59871 -14.24487 -13.85179 -13.66972 -13.32164 -12.64253 -12.52891 -12.38540 -11.86197 -11.82529 -11.48199 -11.40469 -11.28425 -10.96380 -10.92034 -10.78149 -10.48418 -10.45572 -10.15317 -9.52467 -9.11247 -8.87023 -8.41007 -8.36236 -7.83834 -7.52851 -5.97038 -4.00427 1.52789 1.61346 3.17920 3.30607 3.38963 3.43016 3.60092 3.89174 4.46171 4.82977 5.00684 5.02559 5.06571 5.13640 5.24196 5.31430 5.32492 5.37955 5.44079 5.45291 5.67347 5.76597 5.83229 5.92781 6.09873 6.28487 6.32722 6.45229 6.54323 6.66559 6.71110 6.81800 6.88293 7.03263 7.34732 7.35681 7.47184 7.66570 7.84084 8.02051 8.26807 8.48397 9.01578 9.63175 11.12416 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025942 B = 0.004680 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.080914 B = 5982.079434 C = 6579.979653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.155 3.845 4 C -0.249 4.249 5 C -0.033 4.033 6 C -0.132 4.132 7 C 0.072 3.928 8 N -0.490 5.490 9 C -0.003 4.003 10 C 0.034 3.966 11 C -0.512 4.512 12 H 0.056 0.944 13 C 0.066 3.934 14 N -0.887 5.887 15 Si 0.887 3.113 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.021 3.979 20 C 0.177 3.823 21 O -0.289 6.289 22 C 0.024 3.976 23 C -0.244 4.244 24 H 0.055 0.945 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.259 0.741 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.050 0.950 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.597 -7.675 9.399 17.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.109 3.891 4 C -0.268 4.268 5 C -0.052 4.052 6 C -0.133 4.133 7 C -0.056 4.056 8 N -0.213 5.213 9 C -0.131 4.131 10 C 0.015 3.985 11 C -0.551 4.551 12 H 0.075 0.925 13 C -0.136 4.136 14 N -0.525 5.525 15 Si 0.715 3.285 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.107 4.107 20 C 0.130 3.870 21 O -0.201 6.201 22 C -0.071 4.071 23 C -0.263 4.263 24 H 0.074 0.926 25 H 0.115 0.885 26 H 0.073 0.927 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.068 0.932 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.933 -7.817 8.893 17.534 hybrid contribution 1.375 -0.306 0.618 1.538 sum -11.558 -8.123 9.511 17.030 Atomic orbital electron populations 1.23014 0.78587 1.03547 1.01432 1.86029 1.21246 1.27302 1.88801 1.18608 0.91496 0.83945 0.95002 1.21012 0.99619 0.92168 1.13955 1.20592 0.92830 0.96987 0.94747 1.19145 0.92731 0.93620 1.07814 1.21328 0.98465 0.92019 0.93770 1.68676 1.28680 1.05644 1.18264 1.24049 0.94591 0.94091 1.00403 1.20361 0.93438 0.90178 0.94554 1.21136 0.90679 1.28466 1.14776 0.92550 1.24983 0.98527 0.95222 0.94857 1.69988 1.34105 1.30091 1.18281 0.86626 0.85952 0.77793 0.78150 1.19780 1.21111 1.21038 1.24291 0.89468 0.97643 0.99344 1.18595 0.83239 0.92404 0.92715 1.86435 1.14572 1.31711 1.87394 1.23076 0.97461 0.85761 1.00821 1.20311 0.92539 0.97480 1.16015 0.92591 0.88546 0.92736 0.85744 0.85284 0.93658 0.91401 0.92824 0.91892 0.92747 0.93132 0.92602 0.90160 0.92511 0.87978 0.93163 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.18 10.49 -19.42 -0.20 -4.38 16 3 C 0.15 2.26 6.68 -39.24 -0.26 2.00 16 4 C -0.25 -3.35 9.04 -39.40 -0.36 -3.71 16 5 C -0.03 -0.48 9.66 -39.62 -0.38 -0.86 16 6 C -0.13 -2.27 5.29 -104.45 -0.55 -2.83 16 7 C 0.07 1.33 4.88 -4.97 -0.02 1.30 16 8 N -0.49 -10.53 6.26 -239.49 -1.50 -12.03 16 9 C 0.00 -0.06 7.53 -2.76 -0.02 -0.08 16 10 C 0.03 0.88 3.60 -90.84 -0.33 0.55 16 11 C -0.51 -14.22 8.77 -34.44 -0.30 -14.52 16 12 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 13 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 14 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 15 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C 0.02 0.50 5.77 -2.57 -0.01 0.48 16 20 C 0.18 3.08 6.20 -39.24 -0.24 2.83 16 21 O -0.29 -5.21 6.12 -19.41 -0.12 -5.33 16 22 C 0.02 0.34 9.81 101.05 0.99 1.33 16 23 C -0.24 -3.82 8.97 -39.29 -0.35 -4.17 16 24 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 27 H 0.12 1.32 6.29 -52.49 -0.33 0.99 16 28 H 0.13 1.61 8.03 -52.49 -0.42 1.19 16 29 H 0.05 0.87 7.40 -51.93 -0.38 0.49 16 30 H 0.07 1.10 8.00 -51.92 -0.42 0.68 16 31 H 0.05 1.15 7.74 -51.92 -0.40 0.75 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.05 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.08 1.97 5.08 -51.93 -0.26 1.70 16 37 H 0.06 0.78 7.66 -51.93 -0.40 0.38 16 38 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 40 H 0.13 1.88 6.30 -52.49 -0.33 1.55 16 LS Contribution 324.81 15.07 4.89 4.89 Total: -1.00 -31.17 324.81 -7.96 -39.13 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.80 Total: 1.32 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -0.95 Total: -14.68 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.76 Total: -37.16 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.32 Total: -9.71 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.17 -7.96 -39.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597192842.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.417 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds