Wall clock time and date at job start Mon Mar 30 2020 01:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99904 * 2 1 4 4 C 1.38792 * 120.02621 * 0.02562 * 3 2 1 5 5 C 1.38165 * 120.05227 * 179.70908 * 4 3 2 6 6 C 1.38197 * 120.10751 * 0.54454 * 5 4 3 7 7 C 1.50702 * 119.97010 * 179.72528 * 6 5 4 8 8 N 1.46902 * 109.47267 * 259.72989 * 7 6 5 9 9 C 1.47961 * 111.00005 * 189.99947 * 8 7 6 10 10 C 1.53934 * 86.17939 * 137.58072 * 9 8 7 11 11 C 1.50703 * 113.73399 * 221.81705 * 10 9 8 12 12 H 1.07999 * 119.99920 * 358.09577 * 11 10 9 13 13 C 1.37877 * 119.99669 * 178.10223 * 11 10 9 14 14 N 1.31510 * 120.00506 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99624 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47293 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47387 * 119.99775 * 15 13 11 18 18 H 1.48498 * 109.47096 * 240.00236 * 15 13 11 19 19 C 1.48296 * 111.00409 * 289.35248 * 8 7 6 20 20 C 1.38746 * 120.05526 * 359.45530 * 6 5 4 21 21 O 1.35894 * 120.02896 * 180.24955 * 20 6 5 22 22 C 1.42900 * 117.00428 * 180.02562 * 21 20 6 23 23 C 1.38614 * 120.02938 * 179.97438 * 3 2 1 24 24 H 1.09004 * 109.46817 * 60.00525 * 1 2 3 25 25 H 1.09001 * 109.47013 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47433 * 300.00650 * 1 2 3 27 27 H 1.07998 * 119.97612 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.94384 * 180.27206 * 5 4 3 29 29 H 1.08997 * 109.47111 * 139.72755 * 7 6 5 30 30 H 1.09007 * 109.47191 * 19.72918 * 7 6 5 31 31 H 1.09007 * 113.75652 * 23.26342 * 9 8 7 32 32 H 1.08992 * 113.86038 * 251.91266 * 9 8 7 33 33 H 1.09002 * 113.73279 * 90.64057 * 10 9 8 34 34 H 0.96995 * 120.00309 * 180.02562 * 14 13 11 35 35 H 1.09001 * 113.86054 * 108.14174 * 19 8 7 36 36 H 1.09000 * 113.76062 * 336.68481 * 19 8 7 37 37 H 1.09001 * 109.47066 * 59.99840 * 22 21 20 38 38 H 1.09001 * 109.47490 * 180.02562 * 22 21 20 39 39 H 1.08998 * 109.46842 * 300.00282 * 22 21 20 40 40 H 1.08002 * 120.05108 * 0.04047 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3752 0.0005 5 6 1.9172 3.6066 0.0066 6 6 3.2971 3.6822 0.0008 7 6 3.9774 5.0269 0.0012 8 7 4.4128 5.3558 -1.3627 9 6 5.2896 6.5477 -1.3665 10 6 6.1603 5.7767 -2.3749 11 6 7.6405 5.9121 -2.1263 12 1 7.9977 6.5340 -1.3188 13 6 8.5385 5.2421 -2.9298 14 7 8.1036 4.4853 -3.9134 15 14 10.3733 5.4105 -2.6220 16 1 10.6004 6.3140 -1.4656 17 1 10.9506 4.0743 -2.3276 18 1 11.0276 5.9775 -3.8284 19 6 5.5467 4.4962 -1.7805 20 6 4.0567 2.5211 0.0003 21 8 5.4135 2.5961 -0.0003 22 6 6.1316 1.3606 -0.0014 23 6 3.4301 1.2842 0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8898 27 1 0.2120 2.3187 0.0014 28 1 1.3277 4.5114 0.0115 29 1 4.8439 4.9955 0.6616 30 1 3.2797 5.7870 0.3531 31 1 5.7826 6.7332 -0.4122 32 1 4.8202 7.4390 -1.7828 33 1 5.8865 5.9524 -3.4153 34 1 8.7353 4.0137 -4.4784 35 1 5.2812 3.7485 -2.5279 36 1 6.1149 4.0829 -0.9471 37 1 5.8695 0.7888 -0.8916 38 1 7.2027 1.5629 -0.0013 39 1 5.8703 0.7878 0.8883 40 1 4.0197 0.3792 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597192842.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:03 Heat of formation + Delta-G solvation = -29.869928 kcal Electronic energy + Delta-G solvation = -21910.017182 eV Core-core repulsion = 18691.103583 eV Total energy + Delta-G solvation = -3218.913599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.68022 -40.33164 -39.64182 -37.55139 -34.75873 -32.97695 -31.35287 -29.87293 -28.31548 -28.12403 -26.84626 -26.56277 -24.16891 -23.13280 -21.94700 -20.35626 -19.63904 -18.65670 -17.75887 -17.17445 -17.05519 -16.74970 -16.55470 -16.32986 -16.08471 -15.75244 -15.54787 -14.97447 -14.60130 -14.06363 -13.80050 -13.49545 -13.42977 -13.18638 -13.03917 -12.93881 -12.75874 -12.48525 -12.39028 -12.23773 -12.04193 -11.71096 -11.64176 -11.39067 -11.03608 -10.86014 -10.45576 -9.56148 -9.51563 -8.85302 -8.10669 -6.21808 0.37442 0.44970 1.41410 1.43150 1.55096 2.21650 2.44190 2.48954 2.71340 3.18735 3.49049 3.79503 3.92056 4.06803 4.16386 4.22154 4.34839 4.38927 4.42812 4.43663 4.50359 4.56870 4.61093 4.67369 4.70507 4.77407 4.85425 4.88250 5.05306 5.06539 5.14298 5.32598 5.35504 5.52268 5.63288 5.67128 5.74029 5.91687 6.32945 6.35907 6.46937 6.52297 6.86343 7.45660 8.99048 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025942 B = 0.004680 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.080914 B = 5982.079434 C = 6579.979653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.154 3.846 4 C -0.242 4.242 5 C -0.030 4.030 6 C -0.162 4.162 7 C 0.077 3.923 8 N -0.489 5.489 9 C 0.012 3.988 10 C 0.014 3.986 11 C -0.528 4.528 12 H 0.057 0.943 13 C 0.016 3.984 14 N -0.922 5.922 15 Si 0.955 3.045 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.281 1.281 19 C 0.041 3.959 20 C 0.159 3.841 21 O -0.318 6.318 22 C 0.020 3.980 23 C -0.258 4.258 24 H 0.063 0.937 25 H 0.120 0.880 26 H 0.069 0.931 27 H 0.158 0.842 28 H 0.154 0.846 29 H 0.032 0.968 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.018 0.982 34 H 0.261 0.739 35 H 0.025 0.975 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.961 -7.872 10.744 19.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.108 3.892 4 C -0.261 4.261 5 C -0.048 4.048 6 C -0.164 4.164 7 C -0.051 4.051 8 N -0.212 5.212 9 C -0.116 4.116 10 C -0.005 4.005 11 C -0.566 4.566 12 H 0.075 0.925 13 C -0.183 4.183 14 N -0.561 5.561 15 Si 0.781 3.219 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.207 1.207 19 C -0.087 4.087 20 C 0.112 3.888 21 O -0.232 6.232 22 C -0.074 4.074 23 C -0.277 4.277 24 H 0.082 0.918 25 H 0.138 0.862 26 H 0.088 0.912 27 H 0.176 0.824 28 H 0.171 0.829 29 H 0.051 0.949 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.093 0.907 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.317 -8.013 10.251 19.346 hybrid contribution 1.655 -0.330 0.202 1.699 sum -12.662 -8.343 10.453 18.417 Atomic orbital electron populations 1.23383 0.76088 1.05645 1.02524 1.86024 1.23815 1.26555 1.88383 1.18772 0.91359 0.85064 0.93996 1.21355 1.01254 0.91183 1.12312 1.20902 0.91911 0.98563 0.93425 1.19250 0.93969 0.92844 1.10301 1.21308 0.98621 0.93834 0.91295 1.68584 1.27205 1.04465 1.20907 1.23906 0.93781 0.94576 0.99350 1.20368 0.93675 0.92805 0.93681 1.21435 0.91857 1.28458 1.14871 0.92476 1.25787 1.03223 0.94763 0.94528 1.70121 1.35728 1.30988 1.19256 0.85551 0.80146 0.78019 0.78213 1.18884 1.20467 1.20660 1.23899 0.90334 0.96201 0.98281 1.18814 0.82989 0.93293 0.93682 1.86327 1.15437 1.33590 1.87814 1.23214 0.97196 0.85056 1.01958 1.20449 0.93573 0.97197 1.16503 0.91789 0.86178 0.91207 0.82416 0.82852 0.94929 0.88749 0.92122 0.90191 0.96348 0.93027 0.95632 0.90549 0.92691 0.87950 0.90661 0.84238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -7.97 10.49 -92.41 -0.97 -8.94 16 3 C 0.15 4.23 6.68 22.49 0.15 4.38 16 4 C -0.24 -5.85 9.04 22.38 0.20 -5.65 16 5 C -0.03 -0.80 9.66 22.24 0.21 -0.58 16 6 C -0.16 -5.48 5.29 -19.75 -0.10 -5.58 16 7 C 0.08 2.77 4.88 85.56 0.42 3.19 16 8 N -0.49 -21.05 6.26 -911.60 -5.71 -26.75 16 9 C 0.01 0.54 7.53 86.41 0.65 1.19 16 10 C 0.01 0.74 3.60 -10.89 -0.04 0.70 16 11 C -0.53 -29.86 8.77 25.60 0.22 -29.63 16 12 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 13 C 0.02 0.90 5.46 84.66 0.46 1.36 16 14 N -0.92 -55.29 13.29 21.45 0.28 -55.00 16 15 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 16 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 C 0.04 2.07 5.77 86.34 0.50 2.57 16 20 C 0.16 5.54 6.20 22.49 0.14 5.68 16 21 O -0.32 -11.84 6.12 -92.36 -0.56 -12.40 16 22 C 0.02 0.58 9.81 113.37 1.11 1.70 16 23 C -0.26 -7.97 8.97 22.46 0.20 -7.77 16 24 H 0.06 0.79 7.66 -2.38 -0.02 0.77 16 25 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 27 H 0.16 2.67 6.29 -2.91 -0.02 2.65 16 28 H 0.15 3.30 8.03 -2.91 -0.02 3.27 16 29 H 0.03 1.25 7.40 -2.39 -0.02 1.23 16 30 H 0.09 2.84 8.00 -2.38 -0.02 2.82 16 31 H 0.06 2.57 7.74 -2.38 -0.02 2.55 16 32 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 33 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 3.89 5.08 -2.39 -0.01 3.88 16 37 H 0.05 1.57 7.66 -2.39 -0.02 1.55 16 38 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.07 1.75 7.66 -2.39 -0.02 1.73 16 40 H 0.14 3.93 6.30 -2.91 -0.02 3.91 16 Total: -1.00 -68.54 324.81 1.34 -67.20 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 1.03 Total: 17.00 kcal Atomic # 6 Polarization: -32.33 SS G_CDS: 5.24 Total: -27.09 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -5.42 Total: -81.75 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -1.53 Total: -21.34 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -68.54 1.34 -67.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597192842.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.329 kcal (2) G-P(sol) polarization free energy of solvation -68.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds