Wall clock time and date at job start Mon Mar 30 2020 01:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47701 * 2 1 4 4 C 1.37097 * 119.99815 * 264.77013 * 3 2 1 5 5 H 1.08000 * 119.99961 * 138.84868 * 4 3 2 6 6 C 1.38947 * 120.00042 * 318.85033 * 4 3 2 7 7 N 1.31410 * 119.99991 * 341.83003 * 6 4 3 8 8 Si 1.86802 * 120.00107 * 161.82552 * 6 4 3 9 9 H 1.48506 * 109.46786 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47296 * 119.99613 * 8 6 4 11 11 H 1.48500 * 109.47274 * 240.00083 * 8 6 4 12 12 C 1.34771 * 120.00077 * 84.76695 * 3 2 1 13 13 O 1.21295 * 120.00149 * 180.02562 * 12 3 2 14 14 C 1.50699 * 120.00345 * 0.02562 * 12 3 2 15 15 O 1.42900 * 109.47463 * 180.02562 * 14 12 3 16 16 C 1.42899 * 113.99966 * 179.97438 * 15 14 12 17 17 C 1.50701 * 109.47004 * 180.02562 * 16 15 14 18 18 C 1.38249 * 120.00174 * 359.97119 * 17 16 15 19 19 C 1.38213 * 120.00423 * 179.97438 * 18 17 16 20 20 C 1.38259 * 119.99866 * 359.97438 * 19 18 17 21 21 C 1.38214 * 119.99624 * 359.80974 * 20 19 18 22 22 C 1.38218 * 119.99668 * 180.02562 * 17 16 15 23 23 C 1.50691 * 120.00168 * 359.97438 * 22 17 16 24 24 H 1.09003 * 109.46963 * 59.99786 * 1 2 3 25 25 H 1.09000 * 109.47546 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46980 * 300.00295 * 1 2 3 27 27 H 1.08994 * 109.46981 * 239.99234 * 2 1 3 28 28 H 1.09003 * 109.46963 * 120.00214 * 2 1 3 29 29 H 0.96999 * 120.00065 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47166 * 59.99397 * 14 12 3 31 31 H 1.09008 * 109.46861 * 299.99744 * 14 12 3 32 32 H 1.09000 * 109.47240 * 59.99798 * 16 15 14 33 33 H 1.09005 * 109.47217 * 299.99557 * 16 15 14 34 34 H 1.08005 * 119.99951 * 359.97438 * 18 17 16 35 35 H 1.07996 * 120.00428 * 179.97438 * 19 18 17 36 36 H 1.07999 * 120.00208 * 179.97438 * 20 19 18 37 37 H 1.08006 * 119.99942 * 180.22969 * 21 20 19 38 38 H 1.09001 * 109.47451 * 90.00005 * 23 22 17 39 39 H 1.09005 * 109.47290 * 209.99566 * 23 22 17 40 40 H 1.08997 * 109.47275 * 329.99810 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3490 1.9913 -1.1824 5 1 2.0745 3.0217 -1.3535 6 6 3.0372 1.2840 -2.1605 7 7 3.6791 0.1815 -1.8451 8 14 3.0499 1.9001 -3.9239 9 1 2.2575 3.1527 -4.0163 10 1 4.4487 2.1666 -4.3451 11 1 2.4530 0.8707 -4.8123 12 6 2.1428 2.0520 1.1623 13 8 2.5468 3.1956 1.1623 14 6 1.7799 1.3812 2.4620 15 8 1.9954 2.2899 3.5436 16 6 1.6795 1.7498 4.8283 17 6 1.9423 2.7883 5.8883 18 6 2.4180 4.0361 5.5306 19 6 2.6586 4.9888 6.5026 20 6 2.4230 4.6941 7.8327 21 6 1.9432 3.4481 8.1899 22 6 1.7088 2.4928 7.2181 23 6 1.1909 1.1325 7.6081 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 4.1598 -0.3120 -2.5278 30 1 2.4018 0.4968 2.6005 31 1 0.7304 1.0873 2.4386 32 1 2.2994 0.8732 5.0164 33 1 0.6280 1.4635 4.8535 34 1 2.6017 4.2666 4.4915 35 1 3.0306 5.9634 6.2232 36 1 2.6113 5.4383 8.5923 37 1 1.7556 3.2190 9.2285 38 1 2.0311 0.4639 7.7959 39 1 0.5866 1.2189 8.5111 40 1 0.5805 0.7306 6.7994 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598809853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:20 Heat of formation + Delta-G solvation = -55.973779 kcal Electronic energy + Delta-G solvation = -21156.262424 eV Core-core repulsion = 17936.216877 eV Total energy + Delta-G solvation = -3220.045547 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.59497 -38.65020 -36.91034 -34.85718 -33.04545 -32.11424 -31.48896 -29.45995 -28.01702 -26.94156 -25.66929 -24.31999 -22.27761 -21.77124 -20.77097 -19.11346 -16.97315 -16.54353 -16.37315 -15.93448 -15.58639 -15.02110 -14.74938 -14.63812 -14.14378 -13.94831 -13.59330 -13.34153 -13.03937 -12.93977 -12.62941 -12.39254 -12.25840 -11.93907 -11.82256 -11.57549 -11.35319 -11.07943 -10.97153 -10.88000 -10.67723 -10.44548 -10.31063 -10.13351 -9.45528 -8.92793 -8.68762 -8.50501 -8.32937 -7.42697 -6.32109 -4.00624 1.36303 1.48322 3.16861 3.26934 3.32957 3.68897 3.80678 3.91435 4.23608 4.78492 4.82572 4.94991 5.01046 5.13966 5.18636 5.21337 5.37607 5.42117 5.55260 5.58537 5.60339 5.69260 5.70500 5.82778 5.87661 5.94470 6.07838 6.17474 6.20112 6.29442 6.45409 6.50157 6.64074 6.70254 6.83517 7.09270 7.17982 7.44233 7.59252 8.30794 8.53742 9.20770 9.38137 10.01804 10.73367 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031155 B = 0.003623 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.528497 B = 7727.567615 C = 8334.409917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 N -0.442 5.442 4 C -0.306 4.306 5 H 0.089 0.911 6 C 0.038 3.962 7 N -0.872 5.872 8 Si 0.919 3.081 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.465 3.535 13 O -0.560 6.560 14 C 0.049 3.951 15 O -0.358 6.358 16 C 0.099 3.901 17 C -0.086 4.086 18 C -0.087 4.087 19 C -0.128 4.128 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.086 4.086 23 C -0.117 4.117 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.041 0.959 27 H 0.105 0.895 28 H 0.046 0.954 29 H 0.267 0.733 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.141 0.859 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.683 -1.525 15.631 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.023 4.023 3 N -0.164 5.164 4 C -0.434 4.434 5 H 0.107 0.893 6 C -0.166 4.166 7 N -0.510 5.510 8 Si 0.746 3.254 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.206 1.206 12 C 0.252 3.748 13 O -0.441 6.441 14 C -0.030 4.030 15 O -0.276 6.276 16 C 0.023 3.977 17 C -0.086 4.086 18 C -0.105 4.105 19 C -0.146 4.146 20 C -0.140 4.140 21 C -0.144 4.144 22 C -0.086 4.086 23 C -0.174 4.174 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.123 0.877 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.159 0.841 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.295 -0.904 15.496 16.401 hybrid contribution -0.008 -0.249 -0.770 0.809 sum -5.304 -1.152 14.726 15.695 Atomic orbital electron populations 1.22245 0.98167 1.00414 1.01637 1.21485 0.91654 0.85603 1.03532 1.43384 1.56757 1.11798 1.04416 1.19427 1.34835 0.98677 0.90463 0.89318 1.25438 0.93964 0.96578 1.00646 1.69932 1.29561 1.17603 1.33924 0.85987 0.78168 0.79025 0.82250 1.19139 1.20723 1.20635 1.20039 0.82431 0.88200 0.84167 1.90540 1.48731 1.18391 1.86453 1.22430 1.00204 0.92718 0.87691 1.87984 1.87835 1.38840 1.12974 1.21218 0.99145 0.94375 0.82986 1.19577 1.00707 0.95534 0.92747 1.21245 0.96034 0.92270 1.00921 1.21207 1.00782 0.99624 0.92963 1.21116 0.99869 0.96755 0.96273 1.20886 1.01389 0.93589 0.98574 1.19609 1.00234 0.96453 0.92324 1.20821 1.00977 0.93610 1.01956 0.92213 0.92993 0.93960 0.87657 0.93524 0.92313 0.91486 0.91805 0.92144 0.92207 0.84122 0.86074 0.86380 0.86286 0.91063 0.91557 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 10.15 37.16 0.38 -2.52 16 2 C 0.10 2.16 5.41 -4.04 -0.02 2.13 16 3 N -0.44 -11.27 2.50 -114.82 -0.29 -11.56 16 4 C -0.31 -8.55 8.84 -14.93 -0.13 -8.69 16 5 H 0.09 2.60 7.82 -52.49 -0.41 2.19 16 6 C 0.04 1.01 4.95 -17.47 -0.09 0.92 16 7 N -0.87 -23.57 11.61 55.50 0.64 -22.92 16 8 Si 0.92 20.66 29.59 -169.99 -5.03 15.63 16 9 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 C 0.46 11.81 7.67 -10.99 -0.08 11.73 16 13 O -0.56 -16.53 16.41 -14.37 -0.24 -16.77 16 14 C 0.05 0.96 5.02 36.01 0.18 1.14 16 15 O -0.36 -6.97 8.36 -55.14 -0.46 -7.43 16 16 C 0.10 1.45 5.05 36.01 0.18 1.64 16 17 C -0.09 -1.25 5.88 -104.62 -0.62 -1.86 16 18 C -0.09 -1.36 9.38 -39.59 -0.37 -1.73 16 19 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 20 C -0.12 -1.40 10.05 -39.58 -0.40 -1.79 16 21 C -0.13 -1.41 9.70 -39.58 -0.38 -1.79 16 22 C -0.09 -1.04 5.88 -104.63 -0.62 -1.66 16 23 C -0.12 -1.06 9.60 36.00 0.35 -0.71 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.69 6.60 -51.92 -0.34 0.34 16 27 H 0.11 2.47 5.76 -51.93 -0.30 2.17 16 28 H 0.05 0.89 6.66 -51.93 -0.35 0.55 16 29 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 30 H 0.07 1.19 7.41 -51.93 -0.38 0.81 16 31 H 0.06 1.07 6.54 -51.92 -0.34 0.73 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.76 7.49 -51.93 -0.39 0.37 16 34 H 0.14 2.53 7.01 -52.48 -0.37 2.16 16 35 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 40 H 0.07 0.58 6.64 -51.93 -0.34 0.24 16 LS Contribution 332.47 15.07 5.01 5.01 Total: -1.00 -32.67 332.47 -8.12 -40.79 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -5.74 Total: 2.54 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -2.02 Total: -5.27 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.36 Total: -34.48 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.70 Total: -24.20 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.67 -8.12 -40.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598809853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.187 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds