Wall clock time and date at job start Mon Mar 30 2020 01:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47701 * 2 1 4 4 C 1.37097 * 119.99815 * 264.77013 * 3 2 1 5 5 H 1.08000 * 119.99961 * 138.84868 * 4 3 2 6 6 C 1.38947 * 120.00042 * 318.85033 * 4 3 2 7 7 N 1.31410 * 119.99991 * 341.83003 * 6 4 3 8 8 Si 1.86802 * 120.00107 * 161.82552 * 6 4 3 9 9 H 1.48506 * 109.46786 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47296 * 119.99613 * 8 6 4 11 11 H 1.48500 * 109.47274 * 240.00083 * 8 6 4 12 12 C 1.34771 * 120.00077 * 84.76695 * 3 2 1 13 13 O 1.21295 * 120.00149 * 180.02562 * 12 3 2 14 14 C 1.50699 * 120.00345 * 0.02562 * 12 3 2 15 15 O 1.42900 * 109.47463 * 180.02562 * 14 12 3 16 16 C 1.42899 * 113.99966 * 179.97438 * 15 14 12 17 17 C 1.50701 * 109.47004 * 180.02562 * 16 15 14 18 18 C 1.38249 * 120.00174 * 359.97119 * 17 16 15 19 19 C 1.38213 * 120.00423 * 179.97438 * 18 17 16 20 20 C 1.38259 * 119.99866 * 359.97438 * 19 18 17 21 21 C 1.38214 * 119.99624 * 359.80974 * 20 19 18 22 22 C 1.38218 * 119.99668 * 180.02562 * 17 16 15 23 23 C 1.50691 * 120.00168 * 359.97438 * 22 17 16 24 24 H 1.09003 * 109.46963 * 59.99786 * 1 2 3 25 25 H 1.09000 * 109.47546 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46980 * 300.00295 * 1 2 3 27 27 H 1.08994 * 109.46981 * 239.99234 * 2 1 3 28 28 H 1.09003 * 109.46963 * 120.00214 * 2 1 3 29 29 H 0.96999 * 120.00065 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47166 * 59.99397 * 14 12 3 31 31 H 1.09008 * 109.46861 * 299.99744 * 14 12 3 32 32 H 1.09000 * 109.47240 * 59.99798 * 16 15 14 33 33 H 1.09005 * 109.47217 * 299.99557 * 16 15 14 34 34 H 1.08005 * 119.99951 * 359.97438 * 18 17 16 35 35 H 1.07996 * 120.00428 * 179.97438 * 19 18 17 36 36 H 1.07999 * 120.00208 * 179.97438 * 20 19 18 37 37 H 1.08006 * 119.99942 * 180.22969 * 21 20 19 38 38 H 1.09001 * 109.47451 * 90.00005 * 23 22 17 39 39 H 1.09005 * 109.47290 * 209.99566 * 23 22 17 40 40 H 1.08997 * 109.47275 * 329.99810 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3490 1.9913 -1.1824 5 1 2.0745 3.0217 -1.3535 6 6 3.0372 1.2840 -2.1605 7 7 3.6791 0.1815 -1.8451 8 14 3.0499 1.9001 -3.9239 9 1 2.2575 3.1527 -4.0163 10 1 4.4487 2.1666 -4.3451 11 1 2.4530 0.8707 -4.8123 12 6 2.1428 2.0520 1.1623 13 8 2.5468 3.1956 1.1623 14 6 1.7799 1.3812 2.4620 15 8 1.9954 2.2899 3.5436 16 6 1.6795 1.7498 4.8283 17 6 1.9423 2.7883 5.8883 18 6 2.4180 4.0361 5.5306 19 6 2.6586 4.9888 6.5026 20 6 2.4230 4.6941 7.8327 21 6 1.9432 3.4481 8.1899 22 6 1.7088 2.4928 7.2181 23 6 1.1909 1.1325 7.6081 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 4.1598 -0.3120 -2.5278 30 1 2.4018 0.4968 2.6005 31 1 0.7304 1.0873 2.4386 32 1 2.2994 0.8732 5.0164 33 1 0.6280 1.4635 4.8535 34 1 2.6017 4.2666 4.4915 35 1 3.0306 5.9634 6.2232 36 1 2.6113 5.4383 8.5923 37 1 1.7556 3.2190 9.2285 38 1 2.0311 0.4639 7.7959 39 1 0.5866 1.2189 8.5111 40 1 0.5805 0.7306 6.7994 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598809853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:20 Heat of formation + Delta-G solvation = -74.688057 kcal Electronic energy + Delta-G solvation = -21157.073936 eV Core-core repulsion = 17936.216877 eV Total energy + Delta-G solvation = -3220.857059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.76976 -40.31155 -38.35603 -36.82881 -34.11475 -33.92667 -32.55597 -31.17959 -29.52533 -27.93262 -26.87186 -26.11770 -23.93478 -22.78607 -21.76039 -20.93860 -18.81119 -18.12985 -17.59210 -17.36441 -17.08735 -16.76166 -16.07128 -15.81278 -15.58644 -15.40663 -14.92741 -14.65047 -14.48395 -14.11468 -13.90276 -13.67820 -13.58554 -13.17361 -13.09045 -12.95067 -12.82392 -12.77121 -12.62239 -12.31123 -12.06553 -11.87330 -11.83803 -11.68820 -10.95511 -10.77503 -10.33994 -9.67884 -9.46185 -9.43362 -8.36353 -6.13469 0.40603 0.49066 1.36128 1.40688 1.54504 1.98795 2.16703 2.47277 2.83323 2.98537 3.30924 3.83359 3.99340 4.00458 4.09352 4.10272 4.22698 4.25944 4.35299 4.40567 4.46717 4.51839 4.62454 4.68787 4.84292 4.87320 4.90248 4.98262 5.02744 5.15954 5.29983 5.32928 5.43998 5.53576 5.54995 5.63368 5.68719 6.09169 6.15964 6.25980 6.57203 7.17177 7.40593 8.03506 8.67815 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031155 B = 0.003623 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.528497 B = 7727.567615 C = 8334.409917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.098 3.902 3 N -0.450 5.450 4 C -0.344 4.344 5 H 0.059 0.941 6 C 0.006 3.994 7 N -0.890 5.890 8 Si 0.984 3.016 9 H -0.272 1.272 10 H -0.279 1.279 11 H -0.260 1.260 12 C 0.443 3.557 13 O -0.620 6.620 14 C 0.065 3.935 15 O -0.392 6.392 16 C 0.096 3.904 17 C -0.108 4.108 18 C -0.121 4.121 19 C -0.141 4.141 20 C -0.120 4.120 21 C -0.124 4.124 22 C -0.087 4.087 23 C -0.116 4.116 24 H 0.041 0.959 25 H 0.089 0.911 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.274 0.726 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.845 -3.474 17.578 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.025 4.025 3 N -0.171 5.171 4 C -0.472 4.472 5 H 0.077 0.923 6 C -0.197 4.197 7 N -0.527 5.527 8 Si 0.807 3.193 9 H -0.197 1.197 10 H -0.205 1.205 11 H -0.184 1.184 12 C 0.232 3.768 13 O -0.506 6.506 14 C -0.014 4.014 15 O -0.311 6.311 16 C 0.021 3.979 17 C -0.108 4.108 18 C -0.139 4.139 19 C -0.158 4.158 20 C -0.138 4.138 21 C -0.142 4.142 22 C -0.087 4.087 23 C -0.173 4.173 24 H 0.061 0.939 25 H 0.108 0.892 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.146 0.854 36 H 0.166 0.834 37 H 0.171 0.829 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.478 -2.910 17.449 18.839 hybrid contribution 0.391 0.360 -1.297 1.402 sum -6.087 -2.550 16.152 17.448 Atomic orbital electron populations 1.22136 0.94963 1.02809 1.01440 1.21654 0.94258 0.83078 1.03465 1.43698 1.56272 1.13193 1.03952 1.19375 1.36952 0.98246 0.92589 0.92324 1.26170 0.92900 0.96578 1.04020 1.69986 1.29279 1.18101 1.35335 0.85045 0.78077 0.78727 0.77479 1.19662 1.20478 1.18436 1.21103 0.81622 0.87810 0.86219 1.90489 1.51433 1.21061 1.87623 1.22216 1.02256 0.92064 0.84869 1.87975 1.88440 1.39977 1.14695 1.21484 1.00824 0.94861 0.80762 1.19750 1.01802 0.95074 0.94146 1.21088 0.98977 0.94260 0.99602 1.21365 1.01195 0.99568 0.93722 1.21479 0.98664 0.97834 0.95775 1.21357 0.99794 0.92945 1.00070 1.19974 0.99280 0.98240 0.91167 1.20901 1.01623 0.91732 1.03020 0.93940 0.89180 0.92665 0.89961 0.91225 0.91600 0.89427 0.88570 0.90383 0.89910 0.88176 0.85385 0.83363 0.82867 0.89997 0.89451 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.10 10.15 71.98 0.73 -4.37 16 2 C 0.10 4.11 5.41 86.38 0.47 4.58 16 3 N -0.45 -23.59 2.50 -635.56 -1.59 -25.18 16 4 C -0.34 -20.00 8.84 84.04 0.74 -19.26 16 5 H 0.06 3.68 7.82 -2.91 -0.02 3.65 16 6 C 0.01 0.33 4.95 84.93 0.42 0.75 16 7 N -0.89 -48.30 11.61 21.66 0.25 -48.05 16 8 Si 0.98 42.88 29.59 68.60 2.03 44.91 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 12 C 0.44 23.35 7.67 87.66 0.67 24.02 16 13 O -0.62 -39.06 16.41 15.96 0.26 -38.80 16 14 C 0.07 2.51 5.02 71.24 0.36 2.87 16 15 O -0.39 -15.61 8.36 -129.94 -1.09 -16.70 16 16 C 0.10 2.73 5.05 71.24 0.36 3.09 16 17 C -0.11 -3.12 5.88 -19.87 -0.12 -3.23 16 18 C -0.12 -4.02 9.38 22.27 0.21 -3.81 16 19 C -0.14 -3.78 10.05 22.27 0.22 -3.55 16 20 C -0.12 -2.50 10.05 22.27 0.22 -2.28 16 21 C -0.12 -2.38 9.70 22.27 0.22 -2.16 16 22 C -0.09 -1.90 5.88 -19.87 -0.12 -2.01 16 23 C -0.12 -1.69 9.60 71.23 0.68 -1.00 16 24 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.05 1.66 6.60 -2.38 -0.02 1.64 16 27 H 0.08 3.84 5.76 -2.39 -0.01 3.83 16 28 H 0.07 2.54 6.66 -2.39 -0.02 2.52 16 29 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 30 H 0.09 2.97 7.41 -2.39 -0.02 2.95 16 31 H 0.10 3.03 6.54 -2.38 -0.02 3.01 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 1.92 7.49 -2.38 -0.02 1.90 16 34 H 0.10 4.06 7.01 -2.91 -0.02 4.04 16 35 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 36 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.09 0.91 8.08 -2.38 -0.02 0.89 16 40 H 0.07 0.99 6.64 -2.39 -0.02 0.97 16 Total: -1.00 -76.36 332.47 5.97 -70.39 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 1.03 Total: 19.80 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 5.07 Total: -6.37 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -1.34 Total: -73.23 kcal Atomic # 8 Polarization: -54.67 SS G_CDS: -0.82 Total: -55.50 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -76.36 5.97 -70.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598809853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.293 kcal (2) G-P(sol) polarization free energy of solvation -76.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds