Wall clock time and date at job start Mon Mar 30 2020 01:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42908 * 109.46868 * 2 1 4 4 C 1.35893 * 116.99789 * 179.97438 * 3 2 1 5 5 C 1.38754 * 120.05946 * 359.73014 * 4 3 2 6 6 C 1.38120 * 119.94540 * 179.69777 * 5 4 3 7 7 C 1.38288 * 120.05478 * 0.59334 * 6 5 4 8 8 C 1.38243 * 120.11104 * 359.68590 * 7 6 5 9 9 C 1.50701 * 119.96930 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.46741 * 270.01307 * 9 8 7 11 11 C 1.50705 * 109.46980 * 180.02562 * 10 9 8 12 12 O 1.21290 * 120.00163 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99698 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00567 * 359.97438 * 13 11 10 15 15 C 1.37100 * 119.99539 * 179.97438 * 13 11 10 16 16 H 1.07996 * 120.00593 * 322.82466 * 15 13 11 17 17 C 1.38955 * 119.99957 * 142.82971 * 15 13 11 18 18 N 1.31412 * 120.00389 * 158.40768 * 17 15 13 19 19 Si 1.86809 * 119.99755 * 338.40325 * 17 15 13 20 20 H 1.48502 * 109.46797 * 95.72288 * 19 17 15 21 21 H 1.48495 * 109.47057 * 215.72199 * 19 17 15 22 22 H 1.48502 * 109.46949 * 335.72642 * 19 17 15 23 23 C 1.38166 * 120.05774 * 0.02562 * 8 7 6 24 24 H 1.08999 * 109.46823 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47311 * 299.99916 * 1 2 3 26 26 H 1.09001 * 109.46811 * 60.00015 * 1 2 3 27 27 H 1.08991 * 109.46912 * 119.99888 * 2 1 3 28 28 H 1.08996 * 109.47311 * 240.00084 * 2 1 3 29 29 H 1.08002 * 120.02796 * 359.97000 * 5 4 3 30 30 H 1.08001 * 119.97020 * 180.29556 * 6 5 4 31 31 H 1.08006 * 119.94274 * 179.69523 * 7 6 5 32 32 H 1.08998 * 109.47686 * 30.01680 * 9 8 7 33 33 H 1.09006 * 109.47043 * 150.01764 * 9 8 7 34 34 H 1.09003 * 109.47366 * 299.99840 * 10 9 8 35 35 H 1.09002 * 109.47460 * 60.00338 * 10 9 8 36 36 H 1.09003 * 109.46754 * 85.13308 * 14 13 11 37 37 H 1.08997 * 109.47497 * 205.13403 * 14 13 11 38 38 H 1.09004 * 109.46704 * 325.14005 * 14 13 11 39 39 H 0.96999 * 120.00074 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.02734 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3535 1.5254 0.0005 5 6 4.1999 0.4259 0.0067 6 6 5.5689 0.6096 0.0009 7 6 6.0961 1.8880 0.0014 8 6 5.2550 2.9851 0.0011 9 6 5.8331 4.3769 0.0010 10 6 6.0287 4.8478 1.4435 11 6 6.6062 6.2398 1.4435 12 8 6.8380 6.8003 0.3931 13 7 6.8650 6.8620 2.6107 14 6 6.5845 6.1854 3.8795 15 6 7.3908 8.1281 2.6107 16 1 8.1196 8.4102 1.8653 17 6 6.9862 9.0485 3.5698 18 7 7.7496 10.0795 3.8546 19 14 5.3567 8.8203 4.4545 20 1 5.5886 8.1298 5.7486 21 1 4.7395 10.1474 4.7052 22 1 4.4470 8.0022 3.6129 23 6 3.8849 2.8068 0.0009 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 3.7887 -0.5727 0.0116 30 1 6.2280 -0.2459 0.0009 31 1 7.1669 2.0295 0.0019 32 1 6.7943 4.3711 -0.5129 33 1 5.1504 5.0538 -0.5128 34 1 5.0674 4.8537 1.9574 35 1 6.7113 4.1710 1.9574 36 1 7.4317 5.5551 4.1501 37 1 6.4210 6.9290 4.6595 38 1 5.6922 5.5685 3.7727 39 1 7.4670 10.7222 4.5239 40 1 3.2283 3.6642 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599227001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:16 Heat of formation + Delta-G solvation = -46.944299 kcal Electronic energy + Delta-G solvation = -20802.115221 eV Core-core repulsion = 17582.461222 eV Total energy + Delta-G solvation = -3219.653999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.27857 -38.78965 -37.77735 -34.87418 -33.46612 -32.23673 -31.99508 -29.95258 -29.22878 -26.44932 -25.64873 -24.12639 -22.96881 -22.54452 -20.63989 -18.64207 -17.92973 -17.02218 -16.33025 -16.18959 -16.05317 -15.96871 -15.47666 -14.87436 -14.18694 -13.88771 -13.59587 -13.48755 -13.11335 -13.09509 -12.81174 -12.64406 -12.49389 -12.17639 -11.98915 -11.75726 -11.70228 -11.55058 -11.33088 -10.89962 -10.80611 -10.77488 -10.54239 -10.33187 -9.89771 -9.04830 -8.87219 -8.43686 -8.22810 -7.70538 -6.36710 -3.93333 1.28068 1.41581 3.00721 3.05130 3.24042 3.28916 3.71039 3.78542 4.17294 4.47761 4.59575 4.60005 4.76933 4.84380 4.90393 5.00892 5.07537 5.17165 5.32351 5.40914 5.45076 5.46546 5.53746 5.61862 5.70586 5.76023 5.84179 5.98056 6.04936 6.13716 6.23639 6.28782 6.32251 6.39274 6.50042 6.69588 6.78254 7.32270 7.57879 8.31973 8.54734 9.00369 9.35592 9.81638 10.75630 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024416 B = 0.003592 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.510299 B = 7792.589148 C = 8470.479286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.317 6.317 4 C 0.128 3.872 5 C -0.219 4.219 6 C -0.080 4.080 7 C -0.154 4.154 8 C -0.032 4.032 9 C -0.065 4.065 10 C -0.129 4.129 11 C 0.463 3.537 12 O -0.567 6.567 13 N -0.473 5.473 14 C 0.064 3.936 15 C -0.316 4.316 16 H 0.105 0.895 17 C 0.057 3.943 18 N -0.866 5.866 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.265 1.265 23 C -0.150 4.150 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.273 0.727 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.744 -22.353 -3.790 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.232 6.232 4 C 0.084 3.916 5 C -0.238 4.238 6 C -0.098 4.098 7 C -0.172 4.172 8 C -0.033 4.033 9 C -0.103 4.103 10 C -0.170 4.170 11 C 0.252 3.748 12 O -0.449 6.449 13 N -0.195 5.195 14 C -0.079 4.079 15 C -0.443 4.443 16 H 0.123 0.877 17 C -0.148 4.148 18 N -0.503 5.503 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.189 1.189 23 C -0.168 4.168 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.744 -21.732 -4.198 24.604 hybrid contribution -0.780 -0.318 0.793 1.157 sum -11.524 -22.051 -3.405 25.113 Atomic orbital electron populations 1.21778 0.92831 1.02731 1.03630 1.22746 0.95802 0.82214 1.01248 1.86077 1.19289 1.29025 1.88774 1.18962 0.82036 0.94136 0.96513 1.21151 0.94482 0.97680 1.10475 1.20897 0.94204 0.97200 0.97513 1.21031 1.00024 0.91890 1.04257 1.19888 0.92189 0.96071 0.95107 1.20370 1.02259 0.90832 0.96811 1.21601 1.01973 0.96065 0.97316 1.20276 0.82175 0.87952 0.84441 1.90551 1.55559 1.67971 1.30827 1.43706 1.57315 1.15233 1.03281 1.21991 0.99714 0.97590 0.88651 1.19066 1.22195 0.86079 1.16994 0.87749 1.25377 0.97255 0.95276 0.96896 1.69759 1.35385 1.13952 1.31174 0.86917 0.85271 0.77615 0.79382 1.20326 1.21485 1.18908 1.20379 0.94866 0.94823 1.06758 0.90476 0.91461 0.91500 0.92146 0.92180 0.85944 0.85977 0.85713 0.89933 0.90054 0.90085 0.90076 0.93042 0.91712 0.92695 0.91644 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.06 0.44 5.46 37.16 0.20 0.65 16 3 O -0.32 -3.79 10.14 -19.40 -0.20 -3.98 16 4 C 0.13 1.62 6.69 -39.21 -0.26 1.36 16 5 C -0.22 -2.38 9.04 -39.43 -0.36 -2.74 16 6 C -0.08 -0.86 10.04 -39.61 -0.40 -1.25 16 7 C -0.15 -1.87 9.70 -39.56 -0.38 -2.25 16 8 C -0.03 -0.44 5.13 -104.65 -0.54 -0.98 16 9 C -0.07 -1.02 4.63 -27.88 -0.13 -1.15 16 10 C -0.13 -2.21 4.30 -27.88 -0.12 -2.33 16 11 C 0.46 10.83 7.63 -10.98 -0.08 10.75 16 12 O -0.57 -15.39 15.85 5.55 0.09 -15.30 16 13 N -0.47 -11.70 2.59 -122.19 -0.32 -12.01 16 14 C 0.06 1.28 8.78 59.85 0.53 1.81 16 15 C -0.32 -9.16 9.37 -14.93 -0.14 -9.30 16 16 H 0.10 3.39 7.90 -52.49 -0.41 2.97 16 17 C 0.06 1.62 5.29 -17.47 -0.09 1.52 16 18 N -0.87 -25.47 13.96 55.50 0.77 -24.70 16 19 Si 0.88 20.91 24.96 -169.99 -4.24 16.67 16 20 H -0.28 -6.07 6.69 56.52 0.38 -5.70 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 23 C -0.15 -2.04 9.64 -39.43 -0.38 -2.42 16 24 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 28 H 0.06 0.42 7.68 -51.93 -0.40 0.02 16 29 H 0.12 1.03 6.30 -52.49 -0.33 0.70 16 30 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.08 1.32 8.04 -51.93 -0.42 0.91 16 33 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 34 H 0.08 1.29 7.41 -51.93 -0.38 0.91 16 35 H 0.08 1.23 8.11 -51.93 -0.42 0.81 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.37 3.42 -51.93 -0.18 1.19 16 38 H 0.05 0.92 6.64 -51.93 -0.34 0.57 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 330.62 15.07 4.98 4.98 Total: -1.00 -33.38 330.62 -6.51 -39.88 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.82 Total: 1.38 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -1.77 Total: -6.92 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.46 Total: -36.71 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.11 Total: -19.28 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.24 Total: 16.67 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.38 -6.51 -39.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599227001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.061 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds