Wall clock time and date at job start Mon Mar 30 2020 01:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42908 * 109.46868 * 2 1 4 4 C 1.35893 * 116.99789 * 179.97438 * 3 2 1 5 5 C 1.38754 * 120.05946 * 359.73014 * 4 3 2 6 6 C 1.38120 * 119.94540 * 179.69777 * 5 4 3 7 7 C 1.38288 * 120.05478 * 0.59334 * 6 5 4 8 8 C 1.38243 * 120.11104 * 359.68590 * 7 6 5 9 9 C 1.50701 * 119.96930 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.46741 * 270.01307 * 9 8 7 11 11 C 1.50705 * 109.46980 * 180.02562 * 10 9 8 12 12 O 1.21290 * 120.00163 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99698 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00567 * 359.97438 * 13 11 10 15 15 C 1.37100 * 119.99539 * 179.97438 * 13 11 10 16 16 H 1.07996 * 120.00593 * 322.82466 * 15 13 11 17 17 C 1.38955 * 119.99957 * 142.82971 * 15 13 11 18 18 N 1.31412 * 120.00389 * 158.40768 * 17 15 13 19 19 Si 1.86809 * 119.99755 * 338.40325 * 17 15 13 20 20 H 1.48502 * 109.46797 * 95.72288 * 19 17 15 21 21 H 1.48495 * 109.47057 * 215.72199 * 19 17 15 22 22 H 1.48502 * 109.46949 * 335.72642 * 19 17 15 23 23 C 1.38166 * 120.05774 * 0.02562 * 8 7 6 24 24 H 1.08999 * 109.46823 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47311 * 299.99916 * 1 2 3 26 26 H 1.09001 * 109.46811 * 60.00015 * 1 2 3 27 27 H 1.08991 * 109.46912 * 119.99888 * 2 1 3 28 28 H 1.08996 * 109.47311 * 240.00084 * 2 1 3 29 29 H 1.08002 * 120.02796 * 359.97000 * 5 4 3 30 30 H 1.08001 * 119.97020 * 180.29556 * 6 5 4 31 31 H 1.08006 * 119.94274 * 179.69523 * 7 6 5 32 32 H 1.08998 * 109.47686 * 30.01680 * 9 8 7 33 33 H 1.09006 * 109.47043 * 150.01764 * 9 8 7 34 34 H 1.09003 * 109.47366 * 299.99840 * 10 9 8 35 35 H 1.09002 * 109.47460 * 60.00338 * 10 9 8 36 36 H 1.09003 * 109.46754 * 85.13308 * 14 13 11 37 37 H 1.08997 * 109.47497 * 205.13403 * 14 13 11 38 38 H 1.09004 * 109.46704 * 325.14005 * 14 13 11 39 39 H 0.96999 * 120.00074 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.02734 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3535 1.5254 0.0005 5 6 4.1999 0.4259 0.0067 6 6 5.5689 0.6096 0.0009 7 6 6.0961 1.8880 0.0014 8 6 5.2550 2.9851 0.0011 9 6 5.8331 4.3769 0.0010 10 6 6.0287 4.8478 1.4435 11 6 6.6062 6.2398 1.4435 12 8 6.8380 6.8003 0.3931 13 7 6.8650 6.8620 2.6107 14 6 6.5845 6.1854 3.8795 15 6 7.3908 8.1281 2.6107 16 1 8.1196 8.4102 1.8653 17 6 6.9862 9.0485 3.5698 18 7 7.7496 10.0795 3.8546 19 14 5.3567 8.8203 4.4545 20 1 5.5886 8.1298 5.7486 21 1 4.7395 10.1474 4.7052 22 1 4.4470 8.0022 3.6129 23 6 3.8849 2.8068 0.0009 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 3.7887 -0.5727 0.0116 30 1 6.2280 -0.2459 0.0009 31 1 7.1669 2.0295 0.0019 32 1 6.7943 4.3711 -0.5129 33 1 5.1504 5.0538 -0.5128 34 1 5.0674 4.8537 1.9574 35 1 6.7113 4.1710 1.9574 36 1 7.4317 5.5551 4.1501 37 1 6.4210 6.9290 4.6595 38 1 5.6922 5.5685 3.7727 39 1 7.4670 10.7222 4.5239 40 1 3.2283 3.6642 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599227001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:15 Heat of formation + Delta-G solvation = -68.270290 kcal Electronic energy + Delta-G solvation = -20803.039986 eV Core-core repulsion = 17582.461222 eV Total energy + Delta-G solvation = -3220.578764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16973 -40.52795 -38.73128 -36.78455 -34.73010 -34.06858 -32.86461 -30.98498 -30.23520 -28.19214 -27.26273 -25.32127 -24.02354 -23.43618 -21.58398 -20.44881 -19.07154 -18.82721 -17.79248 -17.31188 -17.03938 -17.00228 -16.95444 -16.35911 -15.63322 -15.27547 -14.65350 -14.53793 -14.39903 -14.28908 -14.21856 -13.94098 -13.60419 -13.48933 -13.35440 -13.20771 -12.68778 -12.58069 -12.52645 -12.38193 -12.22033 -11.93743 -11.82364 -11.61592 -11.58149 -11.06732 -10.41207 -9.74692 -9.70899 -9.11743 -8.52742 -6.15349 0.36639 0.52255 1.19099 1.32326 1.44936 1.95358 2.17097 2.27799 2.69200 2.86053 2.96521 3.72755 3.89531 4.04653 4.07872 4.08998 4.18497 4.22297 4.30943 4.35578 4.39888 4.47389 4.49702 4.57459 4.64341 4.75633 4.82147 4.87819 4.95181 5.00792 5.11764 5.20837 5.24704 5.38940 5.51998 5.53157 5.73502 5.87442 6.02308 6.51744 6.55498 6.93403 7.29816 7.87483 8.64900 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024416 B = 0.003592 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.510299 B = 7792.589148 C = 8470.479286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 O -0.338 6.338 4 C 0.119 3.881 5 C -0.214 4.214 6 C -0.075 4.075 7 C -0.161 4.161 8 C -0.041 4.041 9 C -0.058 4.058 10 C -0.113 4.113 11 C 0.455 3.545 12 O -0.618 6.618 13 N -0.487 5.487 14 C 0.057 3.943 15 C -0.339 4.339 16 H 0.042 0.958 17 C 0.008 3.992 18 N -0.913 5.913 19 Si 0.956 3.044 20 H -0.237 1.237 21 H -0.290 1.290 22 H -0.259 1.259 23 C -0.169 4.169 24 H 0.102 0.898 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.150 0.850 30 H 0.154 0.846 31 H 0.135 0.865 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.280 0.720 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.718 -26.179 -2.209 29.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.253 6.253 4 C 0.074 3.926 5 C -0.232 4.232 6 C -0.093 4.093 7 C -0.179 4.179 8 C -0.042 4.042 9 C -0.096 4.096 10 C -0.153 4.153 11 C 0.246 3.754 12 O -0.503 6.503 13 N -0.210 5.210 14 C -0.085 4.085 15 C -0.467 4.467 16 H 0.060 0.940 17 C -0.193 4.193 18 N -0.550 5.550 19 Si 0.779 3.221 20 H -0.162 1.162 21 H -0.217 1.217 22 H -0.183 1.183 23 C -0.187 4.187 24 H 0.120 0.880 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.168 0.832 30 H 0.171 0.829 31 H 0.153 0.847 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.714 -25.595 -2.592 28.696 hybrid contribution -0.116 0.820 0.198 0.851 sum -12.831 -24.775 -2.394 28.003 Atomic orbital electron populations 1.21818 0.91814 1.04167 1.02998 1.23064 0.96697 0.80731 1.02412 1.86063 1.19005 1.31482 1.88705 1.19072 0.82739 0.94203 0.96573 1.21490 0.94447 0.98411 1.08850 1.21254 0.94626 0.97495 0.95883 1.21216 1.00427 0.92119 1.04113 1.19613 0.92411 0.95044 0.97092 1.20209 1.01460 0.92175 0.95712 1.21557 1.02944 0.91885 0.98896 1.21417 0.80760 0.89967 0.83302 1.90518 1.57307 1.69782 1.32727 1.43877 1.57343 1.14119 1.05620 1.22246 1.02694 0.97689 0.85845 1.18686 1.22401 0.89171 1.16393 0.93965 1.26216 1.00892 0.94509 0.97725 1.69875 1.37431 1.15248 1.32481 0.85741 0.78985 0.77860 0.79543 1.16213 1.21693 1.18344 1.20392 0.94866 0.95445 1.08035 0.87984 0.92103 0.92136 0.90871 0.90952 0.83233 0.82863 0.84734 0.90958 0.91970 0.87961 0.87110 0.90493 0.92664 0.88650 0.91000 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 71.98 0.74 -0.82 16 2 C 0.05 0.61 5.46 71.98 0.39 1.00 16 3 O -0.34 -7.47 10.14 -92.35 -0.94 -8.41 16 4 C 0.12 2.76 6.69 22.51 0.15 2.91 16 5 C -0.21 -3.88 9.04 22.37 0.20 -3.68 16 6 C -0.07 -1.31 10.04 22.25 0.22 -1.09 16 7 C -0.16 -3.48 9.70 22.28 0.22 -3.27 16 8 C -0.04 -1.08 5.13 -19.88 -0.10 -1.18 16 9 C -0.06 -1.80 4.63 29.85 0.14 -1.66 16 10 C -0.11 -3.68 4.30 29.85 0.13 -3.55 16 11 C 0.45 21.50 7.63 87.66 0.67 22.17 16 12 O -0.62 -35.23 15.85 -3.06 -0.05 -35.28 16 13 N -0.49 -24.12 2.59 -658.88 -1.70 -25.83 16 14 C 0.06 2.11 8.78 127.77 1.12 3.24 16 15 C -0.34 -20.49 9.37 84.04 0.79 -19.70 16 16 H 0.04 2.99 7.90 -2.91 -0.02 2.97 16 17 C 0.01 0.48 5.29 84.93 0.45 0.93 16 18 N -0.91 -55.43 13.96 21.66 0.30 -55.13 16 19 Si 0.96 42.61 24.96 68.60 1.71 44.33 16 20 H -0.24 -9.12 6.69 99.48 0.67 -8.46 16 21 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 23 C -0.17 -4.42 9.64 22.37 0.22 -4.21 16 24 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.79 7.65 -2.39 -0.02 0.77 16 28 H 0.07 0.78 7.68 -2.39 -0.02 0.76 16 29 H 0.15 1.84 6.30 -2.91 -0.02 1.82 16 30 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 31 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 32 H 0.07 2.36 8.04 -2.39 -0.02 2.34 16 33 H 0.06 2.14 8.04 -2.38 -0.02 2.12 16 34 H 0.10 2.95 7.41 -2.39 -0.02 2.93 16 35 H 0.11 3.00 8.11 -2.39 -0.02 2.98 16 36 H 0.08 2.44 8.14 -2.39 -0.02 2.43 16 37 H 0.05 2.15 3.42 -2.39 -0.01 2.14 16 38 H 0.10 2.74 6.64 -2.39 -0.02 2.72 16 39 H 0.28 15.53 8.31 -92.71 -0.77 14.75 16 40 H 0.12 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -77.99 330.62 5.64 -72.35 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.98 Total: 16.88 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 5.33 Total: -8.91 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -1.40 Total: -80.95 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -0.98 Total: -43.68 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.71 Total: 44.33 kcal Total: -77.99 5.64 -72.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599227001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.080 kcal (2) G-P(sol) polarization free energy of solvation -77.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds