Wall clock time and date at job start Mon Mar 30 2020 01:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 109.46792 * 2 1 4 4 C 1.46496 * 119.99860 * 270.27599 * 3 2 1 5 5 C 1.53003 * 109.47383 * 270.00462 * 4 3 2 6 6 O 1.42898 * 109.47299 * 64.99528 * 5 4 3 7 7 C 1.42892 * 114.00140 * 180.02562 * 6 5 4 8 8 C 1.34779 * 119.99958 * 90.27935 * 3 2 1 9 9 O 1.21608 * 119.99875 * 184.42992 * 8 3 2 10 10 C 1.47433 * 119.99939 * 4.43176 * 8 3 2 11 11 C 1.39229 * 120.28509 * 57.23405 * 10 8 3 12 12 C 1.38216 * 120.08777 * 180.27949 * 11 10 8 13 13 C 1.38830 * 120.67996 * 359.69188 * 12 11 10 14 14 C 1.37592 * 120.56987 * 0.02562 * 13 12 11 15 15 C 1.40706 * 119.88153 * 0.02562 * 14 13 12 16 16 C 1.40891 * 120.32770 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99848 * 216.17929 * 16 15 14 18 18 C 1.40273 * 120.00167 * 36.18031 * 16 15 14 19 19 N 1.30633 * 119.99745 * 22.39041 * 18 16 15 20 20 Si 1.86801 * 119.99973 * 202.39325 * 18 16 15 21 21 H 1.48508 * 109.46784 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46769 * 299.99452 * 20 18 16 23 23 H 1.48493 * 109.47037 * 60.00063 * 20 18 16 24 24 H 1.08998 * 109.46910 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47051 * 299.99890 * 1 2 3 26 26 H 1.08996 * 109.46969 * 60.00598 * 1 2 3 27 27 H 1.08997 * 109.47190 * 239.99643 * 2 1 3 28 28 H 1.09006 * 109.46840 * 119.99376 * 2 1 3 29 29 H 1.09002 * 109.46796 * 30.00221 * 4 3 2 30 30 H 1.08995 * 109.46960 * 150.00105 * 4 3 2 31 31 H 1.08994 * 109.47109 * 185.00437 * 5 4 3 32 32 H 1.09003 * 109.46752 * 305.00366 * 5 4 3 33 33 H 1.08997 * 109.47385 * 300.00538 * 7 6 5 34 34 H 1.09008 * 109.47201 * 60.00617 * 7 6 5 35 35 H 1.09000 * 109.47307 * 180.02562 * 7 6 5 36 36 H 1.07997 * 119.95000 * 359.97438 * 11 10 8 37 37 H 1.08006 * 119.66105 * 179.72067 * 12 11 10 38 38 H 1.08004 * 119.71082 * 180.02562 * 13 12 11 39 39 H 1.07996 * 120.05920 * 180.02562 * 14 13 12 40 40 H 0.97002 * 119.99955 * 5.57054 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2567 2.0739 -1.2687 5 6 3.6996 1.8342 -1.7174 6 8 3.8853 0.4465 -2.0036 7 6 5.2067 0.1133 -2.4331 8 6 2.2483 2.0148 1.1672 9 8 2.5760 3.1859 1.1692 10 6 2.1026 1.2879 2.4416 11 6 2.8405 0.1313 2.6786 12 6 2.6965 -0.5501 3.8724 13 6 1.8238 -0.0906 4.8495 14 6 1.0854 1.0525 4.6467 15 6 1.2126 1.7643 3.4396 16 6 0.4606 2.9356 3.2218 17 1 0.0810 3.1580 2.2354 18 6 0.2049 3.8130 4.2859 19 7 0.9824 3.8106 5.3356 20 14 -1.2476 4.9847 4.2020 21 1 -1.2990 5.7990 5.4429 22 1 -1.0936 5.8805 3.0276 23 1 -2.5048 4.2058 4.0691 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.5724 1.6909 -2.0258 30 1 2.0902 3.1429 -1.1359 31 1 3.9036 2.4205 -2.6134 32 1 4.3820 2.1357 -0.9227 33 1 5.4425 0.6639 -3.3437 34 1 5.9202 0.3790 -1.6529 35 1 5.2656 -0.9570 -2.6304 36 1 3.5228 -0.2365 1.9265 37 1 3.2690 -1.4491 4.0472 38 1 1.7238 -0.6352 5.7768 39 1 0.4093 1.4027 5.4125 40 1 1.7818 3.2613 5.3458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600993266.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:56 Heat of formation + Delta-G solvation = -69.880107 kcal Electronic energy + Delta-G solvation = -22297.349398 eV Core-core repulsion = 19076.700828 eV Total energy + Delta-G solvation = -3220.648570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.48519 -37.83649 -36.95102 -35.16030 -33.83335 -31.42728 -29.98610 -29.46668 -28.51365 -26.28264 -25.17512 -23.36783 -22.92336 -21.30171 -20.96601 -18.66416 -17.64269 -16.71448 -16.34421 -15.87426 -15.39653 -15.02363 -14.84338 -14.45648 -14.07884 -13.63728 -13.45395 -13.21376 -12.61571 -12.47752 -12.41708 -12.18684 -11.94952 -11.82049 -11.71190 -11.40955 -11.21593 -11.06132 -10.95099 -10.73580 -10.50227 -10.37515 -10.06832 -9.67871 -9.52792 -9.00536 -8.74201 -8.08975 -7.68021 -7.60534 -7.16692 -4.47169 2.41334 2.73410 3.19242 3.27920 3.38684 3.60192 3.80097 3.87946 4.05420 4.58382 5.13474 5.19626 5.28961 5.35483 5.38734 5.41436 5.53362 5.57428 5.60922 5.78181 5.92763 5.94701 6.00050 6.05173 6.16233 6.21030 6.35444 6.46636 6.67120 6.77830 6.99171 7.11907 7.19876 7.29435 7.52149 7.64588 7.73214 7.82938 8.04312 8.18344 8.24125 8.67000 8.82951 9.17307 10.08777 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018359 B = 0.006203 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.808986 B = 4512.719593 C = 5210.991590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.108 3.892 3 N -0.615 5.615 4 C 0.120 3.880 5 C 0.046 3.954 6 O -0.387 6.387 7 C 0.032 3.968 8 C 0.587 3.413 9 O -0.542 6.542 10 C -0.244 4.244 11 C -0.052 4.052 12 C -0.252 4.252 13 C -0.078 4.078 14 C -0.201 4.201 15 C 0.130 3.870 16 C -0.501 4.501 17 H 0.074 0.926 18 C 0.041 3.959 19 N -0.793 5.793 20 Si 1.065 2.935 21 H -0.273 1.273 22 H -0.275 1.275 23 H -0.275 1.275 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.861 -6.209 -10.909 12.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.015 4.015 3 N -0.349 5.349 4 C -0.003 4.003 5 C -0.032 4.032 6 O -0.305 6.305 7 C -0.064 4.064 8 C 0.379 3.621 9 O -0.418 6.418 10 C -0.248 4.248 11 C -0.070 4.070 12 C -0.271 4.271 13 C -0.096 4.096 14 C -0.220 4.220 15 C 0.126 3.874 16 C -0.528 4.528 17 H 0.092 0.908 18 C -0.181 4.181 19 N -0.415 5.415 20 Si 0.889 3.111 21 H -0.198 1.198 22 H -0.201 1.201 23 H -0.200 1.200 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.096 -4.537 -9.970 11.008 hybrid contribution 1.256 -1.154 -0.984 1.969 sum 2.352 -5.690 -10.954 12.566 Atomic orbital electron populations 1.22164 0.96708 1.01408 1.02310 1.21611 0.93779 0.82730 1.03403 1.47950 1.67500 1.14538 1.04932 1.21333 0.93716 0.99076 0.86220 1.23083 0.98908 0.82233 0.98980 1.87880 1.29723 1.25438 1.87503 1.22691 0.84686 1.01057 0.97994 1.18503 0.74448 0.85858 0.83334 1.90670 1.47337 1.16487 1.87332 1.19463 1.06828 1.01384 0.97120 1.20596 0.97053 0.93278 0.96117 1.20246 1.07337 1.03136 0.96401 1.20728 0.95867 0.96023 0.97015 1.21154 1.04082 0.97015 0.99764 1.17395 0.88236 0.91967 0.89774 1.20444 1.29100 1.04817 0.98483 0.90754 1.27005 1.01321 0.98717 0.91046 1.70364 1.10426 1.31696 1.29023 0.83638 0.74396 0.75781 0.77305 1.19796 1.20073 1.20005 0.92323 0.91732 0.93318 0.90759 0.89360 0.90490 0.88626 0.92944 0.92881 0.94478 0.94275 0.89915 0.88798 0.88852 0.88906 0.87741 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 10.24 37.16 0.38 -2.23 16 2 C 0.11 1.77 5.77 -4.04 -0.02 1.75 16 3 N -0.61 -11.54 2.44 -174.95 -0.43 -11.97 16 4 C 0.12 1.89 5.85 -4.04 -0.02 1.87 16 5 C 0.05 0.65 6.28 37.16 0.23 0.88 16 6 O -0.39 -5.38 9.52 -35.23 -0.34 -5.71 16 7 C 0.03 0.34 11.01 101.05 1.11 1.45 16 8 C 0.59 13.78 6.29 -12.51 -0.08 13.70 16 9 O -0.54 -14.51 16.04 5.27 0.08 -14.42 16 10 C -0.24 -5.92 4.94 -104.36 -0.52 -6.44 16 11 C -0.05 -1.13 7.55 -39.22 -0.30 -1.42 16 12 C -0.25 -5.31 10.03 -39.37 -0.39 -5.71 16 13 C -0.08 -1.71 10.01 -39.60 -0.40 -2.11 16 14 C -0.20 -4.98 8.06 -38.89 -0.31 -5.29 16 15 C 0.13 3.42 5.08 -106.54 -0.54 2.88 16 16 C -0.50 -13.61 7.81 -37.81 -0.30 -13.90 16 17 H 0.07 2.06 7.59 -52.49 -0.40 1.67 16 18 C 0.04 1.08 4.96 -17.30 -0.09 0.99 16 19 N -0.79 -21.58 12.70 55.56 0.71 -20.87 16 20 Si 1.07 22.43 29.99 -169.99 -5.10 17.33 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.09 7.11 -51.93 -0.37 0.72 16 28 H 0.09 1.56 4.57 -51.93 -0.24 1.32 16 29 H 0.08 1.03 8.07 -51.93 -0.42 0.62 16 30 H 0.10 1.60 7.36 -51.93 -0.38 1.22 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 1.85 7.58 -52.49 -0.40 1.45 16 37 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 38 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 39 H 0.10 2.64 7.20 -52.49 -0.38 2.27 16 40 H 0.30 8.39 6.92 -40.82 -0.28 8.10 16 LS Contribution 333.54 15.07 5.03 5.03 Total: -1.00 -30.35 333.54 -7.17 -37.52 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.89 Total: 6.68 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -1.24 Total: -13.57 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.28 Total: -32.84 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.25 Total: -20.14 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.10 Total: 17.33 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.35 -7.17 -37.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600993266.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.362 kcal (2) G-P(sol) polarization free energy of solvation -30.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds