Wall clock time and date at job start Mon Mar 30 2020 01:28:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46505 * 109.46792 * 2 1
4 4 C 1.46496 * 119.99860 * 270.27599 * 3 2 1
5 5 C 1.53003 * 109.47383 * 270.00462 * 4 3 2
6 6 O 1.42898 * 109.47299 * 64.99528 * 5 4 3
7 7 C 1.42892 * 114.00140 * 180.02562 * 6 5 4
8 8 C 1.34779 * 119.99958 * 90.27935 * 3 2 1
9 9 O 1.21608 * 119.99875 * 184.42992 * 8 3 2
10 10 C 1.47433 * 119.99939 * 4.43176 * 8 3 2
11 11 C 1.39229 * 120.28509 * 57.23405 * 10 8 3
12 12 C 1.38216 * 120.08777 * 180.27949 * 11 10 8
13 13 C 1.38830 * 120.67996 * 359.69188 * 12 11 10
14 14 C 1.37592 * 120.56987 * 0.02562 * 13 12 11
15 15 C 1.40706 * 119.88153 * 0.02562 * 14 13 12
16 16 C 1.40891 * 120.32770 * 179.97438 * 15 14 13
17 17 H 1.07998 * 119.99848 * 216.17929 * 16 15 14
18 18 C 1.40273 * 120.00167 * 36.18031 * 16 15 14
19 19 N 1.30633 * 119.99745 * 22.39041 * 18 16 15
20 20 Si 1.86801 * 119.99973 * 202.39325 * 18 16 15
21 21 H 1.48508 * 109.46784 * 179.97438 * 20 18 16
22 22 H 1.48501 * 109.46769 * 299.99452 * 20 18 16
23 23 H 1.48493 * 109.47037 * 60.00063 * 20 18 16
24 24 H 1.08998 * 109.46910 * 180.02562 * 1 2 3
25 25 H 1.09002 * 109.47051 * 299.99890 * 1 2 3
26 26 H 1.08996 * 109.46969 * 60.00598 * 1 2 3
27 27 H 1.08997 * 109.47190 * 239.99643 * 2 1 3
28 28 H 1.09006 * 109.46840 * 119.99376 * 2 1 3
29 29 H 1.09002 * 109.46796 * 30.00221 * 4 3 2
30 30 H 1.08995 * 109.46960 * 150.00105 * 4 3 2
31 31 H 1.08994 * 109.47109 * 185.00437 * 5 4 3
32 32 H 1.09003 * 109.46752 * 305.00366 * 5 4 3
33 33 H 1.08997 * 109.47385 * 300.00538 * 7 6 5
34 34 H 1.09008 * 109.47201 * 60.00617 * 7 6 5
35 35 H 1.09000 * 109.47307 * 180.02562 * 7 6 5
36 36 H 1.07997 * 119.95000 * 359.97438 * 11 10 8
37 37 H 1.08006 * 119.66105 * 179.72067 * 12 11 10
38 38 H 1.08004 * 119.71082 * 180.02562 * 13 12 11
39 39 H 1.07996 * 120.05920 * 180.02562 * 14 13 12
40 40 H 0.97002 * 119.99955 * 5.57054 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2567 2.0739 -1.2687
5 6 3.6996 1.8342 -1.7174
6 8 3.8853 0.4465 -2.0036
7 6 5.2067 0.1133 -2.4331
8 6 2.2483 2.0148 1.1672
9 8 2.5760 3.1859 1.1692
10 6 2.1026 1.2879 2.4416
11 6 2.8405 0.1313 2.6786
12 6 2.6965 -0.5501 3.8724
13 6 1.8238 -0.0906 4.8495
14 6 1.0854 1.0525 4.6467
15 6 1.2126 1.7643 3.4396
16 6 0.4606 2.9356 3.2218
17 1 0.0810 3.1580 2.2354
18 6 0.2049 3.8130 4.2859
19 7 0.9824 3.8106 5.3356
20 14 -1.2476 4.9847 4.2020
21 1 -1.2990 5.7990 5.4429
22 1 -1.0936 5.8805 3.0276
23 1 -2.5048 4.2058 4.0691
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3633 0.5138 0.8900
26 1 -0.3633 0.5137 -0.8900
27 1 1.8934 -0.5139 -0.8899
28 1 1.8933 -0.5138 0.8901
29 1 1.5724 1.6909 -2.0258
30 1 2.0902 3.1429 -1.1359
31 1 3.9036 2.4205 -2.6134
32 1 4.3820 2.1357 -0.9227
33 1 5.4425 0.6639 -3.3437
34 1 5.9202 0.3790 -1.6529
35 1 5.2656 -0.9570 -2.6304
36 1 3.5228 -0.2365 1.9265
37 1 3.2690 -1.4491 4.0472
38 1 1.7238 -0.6352 5.7768
39 1 0.4093 1.4027 5.4125
40 1 1.7818 3.2613 5.3458
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000600993266.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:28:56
Heat of formation + Delta-G solvation = -69.880107 kcal
Electronic energy + Delta-G solvation = -22297.349398 eV
Core-core repulsion = 19076.700828 eV
Total energy + Delta-G solvation = -3220.648570 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 277.146 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-39.48519 -37.83649 -36.95102 -35.16030 -33.83335 -31.42728 -29.98610 -29.46668
-28.51365 -26.28264 -25.17512 -23.36783 -22.92336 -21.30171 -20.96601 -18.66416
-17.64269 -16.71448 -16.34421 -15.87426 -15.39653 -15.02363 -14.84338 -14.45648
-14.07884 -13.63728 -13.45395 -13.21376 -12.61571 -12.47752 -12.41708 -12.18684
-11.94952 -11.82049 -11.71190 -11.40955 -11.21593 -11.06132 -10.95099 -10.73580
-10.50227 -10.37515 -10.06832 -9.67871 -9.52792 -9.00536 -8.74201 -8.08975
-7.68021 -7.60534 -7.16692 -4.47169 2.41334 2.73410 3.19242 3.27920
3.38684 3.60192 3.80097 3.87946 4.05420 4.58382 5.13474 5.19626
5.28961 5.35483 5.38734 5.41436 5.53362 5.57428 5.60922 5.78181
5.92763 5.94701 6.00050 6.05173 6.16233 6.21030 6.35444 6.46636
6.67120 6.77830 6.99171 7.11907 7.19876 7.29435 7.52149 7.64588
7.73214 7.82938 8.04312 8.18344 8.24125 8.67000 8.82951 9.17307
10.08777
Molecular weight = 277.15amu
Principal moments of inertia in cm(-1)
A = 0.018359 B = 0.006203 C = 0.005372
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1524.808986 B = 4512.719593 C = 5210.991590
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.108 3.892
3 N -0.615 5.615
4 C 0.120 3.880
5 C 0.046 3.954
6 O -0.387 6.387
7 C 0.032 3.968
8 C 0.587 3.413
9 O -0.542 6.542
10 C -0.244 4.244
11 C -0.052 4.052
12 C -0.252 4.252
13 C -0.078 4.078
14 C -0.201 4.201
15 C 0.130 3.870
16 C -0.501 4.501
17 H 0.074 0.926
18 C 0.041 3.959
19 N -0.793 5.793
20 Si 1.065 2.935
21 H -0.273 1.273
22 H -0.275 1.275
23 H -0.275 1.275
24 H 0.058 0.942
25 H 0.064 0.936
26 H 0.048 0.952
27 H 0.074 0.926
28 H 0.088 0.912
29 H 0.077 0.923
30 H 0.096 0.904
31 H 0.052 0.948
32 H 0.053 0.947
33 H 0.037 0.963
34 H 0.039 0.961
35 H 0.082 0.918
36 H 0.094 0.906
37 H 0.093 0.907
38 H 0.093 0.907
39 H 0.105 0.895
40 H 0.298 0.702
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.861 -6.209 -10.909 12.689
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C -0.015 4.015
3 N -0.349 5.349
4 C -0.003 4.003
5 C -0.032 4.032
6 O -0.305 6.305
7 C -0.064 4.064
8 C 0.379 3.621
9 O -0.418 6.418
10 C -0.248 4.248
11 C -0.070 4.070
12 C -0.271 4.271
13 C -0.096 4.096
14 C -0.220 4.220
15 C 0.126 3.874
16 C -0.528 4.528
17 H 0.092 0.908
18 C -0.181 4.181
19 N -0.415 5.415
20 Si 0.889 3.111
21 H -0.198 1.198
22 H -0.201 1.201
23 H -0.200 1.200
24 H 0.077 0.923
25 H 0.083 0.917
26 H 0.067 0.933
27 H 0.092 0.908
28 H 0.106 0.894
29 H 0.095 0.905
30 H 0.114 0.886
31 H 0.071 0.929
32 H 0.071 0.929
33 H 0.055 0.945
34 H 0.057 0.943
35 H 0.101 0.899
36 H 0.112 0.888
37 H 0.111 0.889
38 H 0.111 0.889
39 H 0.123 0.877
40 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 1.096 -4.537 -9.970 11.008
hybrid contribution 1.256 -1.154 -0.984 1.969
sum 2.352 -5.690 -10.954 12.566
Atomic orbital electron populations
1.22164 0.96708 1.01408 1.02310 1.21611 0.93779 0.82730 1.03403
1.47950 1.67500 1.14538 1.04932 1.21333 0.93716 0.99076 0.86220
1.23083 0.98908 0.82233 0.98980 1.87880 1.29723 1.25438 1.87503
1.22691 0.84686 1.01057 0.97994 1.18503 0.74448 0.85858 0.83334
1.90670 1.47337 1.16487 1.87332 1.19463 1.06828 1.01384 0.97120
1.20596 0.97053 0.93278 0.96117 1.20246 1.07337 1.03136 0.96401
1.20728 0.95867 0.96023 0.97015 1.21154 1.04082 0.97015 0.99764
1.17395 0.88236 0.91967 0.89774 1.20444 1.29100 1.04817 0.98483
0.90754 1.27005 1.01321 0.98717 0.91046 1.70364 1.10426 1.31696
1.29023 0.83638 0.74396 0.75781 0.77305 1.19796 1.20073 1.20005
0.92323 0.91732 0.93318 0.90759 0.89360 0.90490 0.88626 0.92944
0.92881 0.94478 0.94275 0.89915 0.88798 0.88852 0.88906 0.87741
0.88909
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.61 10.24 37.16 0.38 -2.23 16
2 C 0.11 1.77 5.77 -4.04 -0.02 1.75 16
3 N -0.61 -11.54 2.44 -174.95 -0.43 -11.97 16
4 C 0.12 1.89 5.85 -4.04 -0.02 1.87 16
5 C 0.05 0.65 6.28 37.16 0.23 0.88 16
6 O -0.39 -5.38 9.52 -35.23 -0.34 -5.71 16
7 C 0.03 0.34 11.01 101.05 1.11 1.45 16
8 C 0.59 13.78 6.29 -12.51 -0.08 13.70 16
9 O -0.54 -14.51 16.04 5.27 0.08 -14.42 16
10 C -0.24 -5.92 4.94 -104.36 -0.52 -6.44 16
11 C -0.05 -1.13 7.55 -39.22 -0.30 -1.42 16
12 C -0.25 -5.31 10.03 -39.37 -0.39 -5.71 16
13 C -0.08 -1.71 10.01 -39.60 -0.40 -2.11 16
14 C -0.20 -4.98 8.06 -38.89 -0.31 -5.29 16
15 C 0.13 3.42 5.08 -106.54 -0.54 2.88 16
16 C -0.50 -13.61 7.81 -37.81 -0.30 -13.90 16
17 H 0.07 2.06 7.59 -52.49 -0.40 1.67 16
18 C 0.04 1.08 4.96 -17.30 -0.09 0.99 16
19 N -0.79 -21.58 12.70 55.56 0.71 -20.87 16
20 Si 1.07 22.43 29.99 -169.99 -5.10 17.33 16
21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16
22 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16
23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16
24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16
27 H 0.07 1.09 7.11 -51.93 -0.37 0.72 16
28 H 0.09 1.56 4.57 -51.93 -0.24 1.32 16
29 H 0.08 1.03 8.07 -51.93 -0.42 0.62 16
30 H 0.10 1.60 7.36 -51.93 -0.38 1.22 16
31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16
33 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16
34 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16
35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
36 H 0.09 1.85 7.58 -52.49 -0.40 1.45 16
37 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16
38 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16
39 H 0.10 2.64 7.20 -52.49 -0.38 2.27 16
40 H 0.30 8.39 6.92 -40.82 -0.28 8.10 16
LS Contribution 333.54 15.07 5.03 5.03
Total: -1.00 -30.35 333.54 -7.17 -37.52
By element:
Atomic # 1 Polarization: 12.57 SS G_CDS: -5.89 Total: 6.68 kcal
Atomic # 6 Polarization: -12.34 SS G_CDS: -1.24 Total: -13.57 kcal
Atomic # 7 Polarization: -33.12 SS G_CDS: 0.28 Total: -32.84 kcal
Atomic # 8 Polarization: -19.89 SS G_CDS: -0.25 Total: -20.14 kcal
Atomic # 14 Polarization: 22.43 SS G_CDS: -5.10 Total: 17.33 kcal
Total LS contribution 5.03 Total: 5.03 kcal
Total: -30.35 -7.17 -37.52 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000600993266.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.362 kcal
(2) G-P(sol) polarization free energy of solvation -30.349 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.711 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.518 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.880 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds