Wall clock time and date at job start Mon Mar 30 2020 01:28:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46505 * 109.46792 * 2 1
4 4 C 1.46496 * 119.99860 * 270.27599 * 3 2 1
5 5 C 1.53003 * 109.47383 * 270.00462 * 4 3 2
6 6 O 1.42898 * 109.47299 * 64.99528 * 5 4 3
7 7 C 1.42892 * 114.00140 * 180.02562 * 6 5 4
8 8 C 1.34779 * 119.99958 * 90.27935 * 3 2 1
9 9 O 1.21608 * 119.99875 * 184.42992 * 8 3 2
10 10 C 1.47433 * 119.99939 * 4.43176 * 8 3 2
11 11 C 1.39229 * 120.28509 * 57.23405 * 10 8 3
12 12 C 1.38216 * 120.08777 * 180.27949 * 11 10 8
13 13 C 1.38830 * 120.67996 * 359.69188 * 12 11 10
14 14 C 1.37592 * 120.56987 * 0.02562 * 13 12 11
15 15 C 1.40706 * 119.88153 * 0.02562 * 14 13 12
16 16 C 1.40891 * 120.32770 * 179.97438 * 15 14 13
17 17 H 1.07998 * 119.99848 * 216.17929 * 16 15 14
18 18 C 1.40273 * 120.00167 * 36.18031 * 16 15 14
19 19 N 1.30633 * 119.99745 * 22.39041 * 18 16 15
20 20 Si 1.86801 * 119.99973 * 202.39325 * 18 16 15
21 21 H 1.48508 * 109.46784 * 179.97438 * 20 18 16
22 22 H 1.48501 * 109.46769 * 299.99452 * 20 18 16
23 23 H 1.48493 * 109.47037 * 60.00063 * 20 18 16
24 24 H 1.08998 * 109.46910 * 180.02562 * 1 2 3
25 25 H 1.09002 * 109.47051 * 299.99890 * 1 2 3
26 26 H 1.08996 * 109.46969 * 60.00598 * 1 2 3
27 27 H 1.08997 * 109.47190 * 239.99643 * 2 1 3
28 28 H 1.09006 * 109.46840 * 119.99376 * 2 1 3
29 29 H 1.09002 * 109.46796 * 30.00221 * 4 3 2
30 30 H 1.08995 * 109.46960 * 150.00105 * 4 3 2
31 31 H 1.08994 * 109.47109 * 185.00437 * 5 4 3
32 32 H 1.09003 * 109.46752 * 305.00366 * 5 4 3
33 33 H 1.08997 * 109.47385 * 300.00538 * 7 6 5
34 34 H 1.09008 * 109.47201 * 60.00617 * 7 6 5
35 35 H 1.09000 * 109.47307 * 180.02562 * 7 6 5
36 36 H 1.07997 * 119.95000 * 359.97438 * 11 10 8
37 37 H 1.08006 * 119.66105 * 179.72067 * 12 11 10
38 38 H 1.08004 * 119.71082 * 180.02562 * 13 12 11
39 39 H 1.07996 * 120.05920 * 180.02562 * 14 13 12
40 40 H 0.97002 * 119.99955 * 5.57054 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2567 2.0739 -1.2687
5 6 3.6996 1.8342 -1.7174
6 8 3.8853 0.4465 -2.0036
7 6 5.2067 0.1133 -2.4331
8 6 2.2483 2.0148 1.1672
9 8 2.5760 3.1859 1.1692
10 6 2.1026 1.2879 2.4416
11 6 2.8405 0.1313 2.6786
12 6 2.6965 -0.5501 3.8724
13 6 1.8238 -0.0906 4.8495
14 6 1.0854 1.0525 4.6467
15 6 1.2126 1.7643 3.4396
16 6 0.4606 2.9356 3.2218
17 1 0.0810 3.1580 2.2354
18 6 0.2049 3.8130 4.2859
19 7 0.9824 3.8106 5.3356
20 14 -1.2476 4.9847 4.2020
21 1 -1.2990 5.7990 5.4429
22 1 -1.0936 5.8805 3.0276
23 1 -2.5048 4.2058 4.0691
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3633 0.5138 0.8900
26 1 -0.3633 0.5137 -0.8900
27 1 1.8934 -0.5139 -0.8899
28 1 1.8933 -0.5138 0.8901
29 1 1.5724 1.6909 -2.0258
30 1 2.0902 3.1429 -1.1359
31 1 3.9036 2.4205 -2.6134
32 1 4.3820 2.1357 -0.9227
33 1 5.4425 0.6639 -3.3437
34 1 5.9202 0.3790 -1.6529
35 1 5.2656 -0.9570 -2.6304
36 1 3.5228 -0.2365 1.9265
37 1 3.2690 -1.4491 4.0472
38 1 1.7238 -0.6352 5.7768
39 1 0.4093 1.4027 5.4125
40 1 1.7818 3.2613 5.3458
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000600993266.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:28:55
Heat of formation + Delta-G solvation = -87.857031 kcal
Electronic energy + Delta-G solvation = -22298.128936 eV
Core-core repulsion = 19076.700828 eV
Total energy + Delta-G solvation = -3221.428108 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 277.146 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-41.17124 -39.21565 -38.51113 -36.77516 -35.72493 -32.78759 -31.70772 -31.32130
-29.88737 -27.35235 -26.95363 -24.95868 -24.23594 -22.99559 -22.72430 -20.37828
-19.45271 -18.17866 -17.70174 -17.13100 -16.89725 -16.59936 -16.28208 -15.95324
-15.73354 -15.29389 -14.95012 -14.67484 -14.34661 -14.18185 -14.00018 -13.75879
-13.40384 -13.07782 -12.96754 -12.85150 -12.78773 -12.64237 -12.43660 -12.17212
-12.01209 -11.95567 -11.81689 -11.39120 -10.91849 -10.74458 -10.50811 -9.70995
-9.50755 -9.46387 -9.14000 -6.49054 0.56546 0.88479 1.45333 1.59114
1.74485 1.91851 2.21812 2.31113 2.68562 2.82763 3.44691 3.86871
4.04626 4.13090 4.22436 4.25303 4.33253 4.41122 4.44069 4.52860
4.53572 4.60981 4.69077 4.77634 4.78792 4.84300 4.90131 4.93850
5.02502 5.11988 5.34679 5.38690 5.60531 5.72315 5.75148 5.82448
5.90909 6.14067 6.18671 6.31149 6.53005 6.74756 6.87440 7.41148
8.05314
Molecular weight = 277.15amu
Principal moments of inertia in cm(-1)
A = 0.018359 B = 0.006203 C = 0.005372
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1524.808986 B = 4512.719593 C = 5210.991590
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.107 3.893
3 N -0.605 5.605
4 C 0.113 3.887
5 C 0.056 3.944
6 O -0.401 6.401
7 C 0.027 3.973
8 C 0.580 3.420
9 O -0.589 6.589
10 C -0.254 4.254
11 C -0.053 4.053
12 C -0.232 4.232
13 C -0.077 4.077
14 C -0.218 4.218
15 C 0.105 3.895
16 C -0.538 4.538
17 H 0.052 0.948
18 C 0.005 3.995
19 N -0.818 5.818
20 Si 1.112 2.888
21 H -0.266 1.266
22 H -0.271 1.271
23 H -0.256 1.256
24 H 0.086 0.914
25 H 0.024 0.976
26 H 0.061 0.939
27 H 0.103 0.897
28 H 0.078 0.922
29 H 0.107 0.893
30 H 0.078 0.922
31 H 0.083 0.917
32 H 0.026 0.974
33 H 0.055 0.945
34 H 0.033 0.967
35 H 0.101 0.899
36 H 0.120 0.880
37 H 0.135 0.865
38 H 0.126 0.874
39 H 0.088 0.912
40 H 0.279 0.721
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.253 -8.592 -12.541 15.368
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C -0.015 4.015
3 N -0.338 5.338
4 C -0.009 4.009
5 C -0.022 4.022
6 O -0.320 6.320
7 C -0.069 4.069
8 C 0.372 3.628
9 O -0.470 6.470
10 C -0.259 4.259
11 C -0.072 4.072
12 C -0.251 4.251
13 C -0.095 4.095
14 C -0.238 4.238
15 C 0.102 3.898
16 C -0.566 4.566
17 H 0.071 0.929
18 C -0.210 4.210
19 N -0.441 5.441
20 Si 0.929 3.071
21 H -0.190 1.190
22 H -0.197 1.197
23 H -0.180 1.180
24 H 0.104 0.896
25 H 0.044 0.956
26 H 0.080 0.920
27 H 0.121 0.879
28 H 0.096 0.904
29 H 0.125 0.875
30 H 0.097 0.903
31 H 0.101 0.899
32 H 0.044 0.956
33 H 0.073 0.927
34 H 0.052 0.948
35 H 0.120 0.880
36 H 0.138 0.862
37 H 0.153 0.847
38 H 0.143 0.857
39 H 0.106 0.894
40 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 1.490 -6.983 -11.642 13.657
hybrid contribution 1.295 -0.680 -0.610 1.585
sum 2.785 -7.663 -12.252 14.717
Atomic orbital electron populations
1.22104 0.95999 1.02812 1.00998 1.21779 0.94281 0.81269 1.04157
1.47948 1.65789 1.15345 1.04671 1.21570 0.95903 0.98146 0.85297
1.22879 0.96742 0.83236 0.99344 1.87827 1.31633 1.24787 1.87752
1.22898 0.82989 1.02542 0.98497 1.18526 0.74377 0.85349 0.84566
1.90633 1.49916 1.18327 1.88133 1.19781 1.06540 1.02155 0.97411
1.20903 0.96674 0.92385 0.97205 1.20765 1.05744 1.03546 0.95054
1.21108 0.94872 0.94921 0.98589 1.21140 1.05139 0.98318 0.99189
1.17708 0.88849 0.92173 0.91076 1.20415 1.31850 1.06460 0.97910
0.92943 1.28311 1.02834 0.99548 0.90356 1.70496 1.10644 1.32837
1.30138 0.83086 0.72184 0.74268 0.77540 1.18991 1.19659 1.18019
0.89556 0.95639 0.91986 0.87933 0.90410 0.87470 0.90324 0.89946
0.95561 0.92688 0.94808 0.88012 0.86240 0.84700 0.85654 0.89357
0.90963
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.76 10.24 71.98 0.74 -4.03 16
2 C 0.11 3.30 5.77 86.38 0.50 3.80 16
3 N -0.61 -22.43 2.44 -825.66 -2.01 -24.44 16
4 C 0.11 3.45 5.85 86.38 0.51 3.95 16
5 C 0.06 1.48 6.28 71.98 0.45 1.93 16
6 O -0.40 -9.97 9.52 -148.98 -1.42 -11.39 16
7 C 0.03 0.48 11.01 113.37 1.25 1.73 16
8 C 0.58 27.97 6.29 86.67 0.55 28.51 16
9 O -0.59 -33.12 16.04 -4.06 -0.07 -33.19 16
10 C -0.25 -12.57 4.94 -19.70 -0.10 -12.67 16
11 C -0.05 -2.22 7.55 22.50 0.17 -2.05 16
12 C -0.23 -9.06 10.03 22.41 0.22 -8.83 16
13 C -0.08 -3.25 10.01 22.26 0.22 -3.02 16
14 C -0.22 -11.07 8.06 22.72 0.18 -10.89 16
15 C 0.11 5.75 5.08 -21.11 -0.11 5.64 16
16 C -0.54 -30.95 7.81 23.41 0.18 -30.76 16
17 H 0.05 3.13 7.59 -2.91 -0.02 3.11 16
18 C 0.00 0.27 4.96 85.37 0.42 0.69 16
19 N -0.82 -46.79 12.70 21.88 0.28 -46.52 16
20 Si 1.11 46.91 29.99 68.60 2.06 48.97 16
21 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16
22 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16
23 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16
24 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16
25 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16
26 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16
27 H 0.10 2.64 7.11 -2.39 -0.02 2.62 16
28 H 0.08 2.58 4.57 -2.38 -0.01 2.57 16
29 H 0.11 2.60 8.07 -2.39 -0.02 2.58 16
30 H 0.08 2.67 7.36 -2.39 -0.02 2.66 16
31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16
32 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16
33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16
34 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16
35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16
36 H 0.12 4.36 7.58 -2.91 -0.02 4.33 16
37 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16
38 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16
39 H 0.09 4.68 7.20 -2.91 -0.02 4.65 16
40 H 0.28 16.66 6.92 -92.71 -0.64 16.01 16
Total: -1.00 -70.28 333.54 5.18 -65.10
By element:
Atomic # 1 Polarization: 26.30 SS G_CDS: 1.15 Total: 27.45 kcal
Atomic # 6 Polarization: -31.18 SS G_CDS: 5.19 Total: -25.99 kcal
Atomic # 7 Polarization: -69.22 SS G_CDS: -1.73 Total: -70.95 kcal
Atomic # 8 Polarization: -43.10 SS G_CDS: -1.48 Total: -44.58 kcal
Atomic # 14 Polarization: 46.91 SS G_CDS: 2.06 Total: 48.97 kcal
Total: -70.28 5.18 -65.10 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000600993266.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.753 kcal
(2) G-P(sol) polarization free energy of solvation -70.280 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.034 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.177 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.104 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.857 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds