Wall clock time and date at job start Mon Mar 30 2020 01:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 109.46792 * 2 1 4 4 C 1.46496 * 119.99860 * 270.27599 * 3 2 1 5 5 C 1.53003 * 109.47383 * 270.00462 * 4 3 2 6 6 O 1.42898 * 109.47299 * 64.99528 * 5 4 3 7 7 C 1.42892 * 114.00140 * 180.02562 * 6 5 4 8 8 C 1.34779 * 119.99958 * 90.27935 * 3 2 1 9 9 O 1.21608 * 119.99875 * 184.42992 * 8 3 2 10 10 C 1.47433 * 119.99939 * 4.43176 * 8 3 2 11 11 C 1.39229 * 120.28509 * 57.23405 * 10 8 3 12 12 C 1.38216 * 120.08777 * 180.27949 * 11 10 8 13 13 C 1.38830 * 120.67996 * 359.69188 * 12 11 10 14 14 C 1.37592 * 120.56987 * 0.02562 * 13 12 11 15 15 C 1.40706 * 119.88153 * 0.02562 * 14 13 12 16 16 C 1.40891 * 120.32770 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99848 * 216.17929 * 16 15 14 18 18 C 1.40273 * 120.00167 * 36.18031 * 16 15 14 19 19 N 1.30633 * 119.99745 * 22.39041 * 18 16 15 20 20 Si 1.86801 * 119.99973 * 202.39325 * 18 16 15 21 21 H 1.48508 * 109.46784 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46769 * 299.99452 * 20 18 16 23 23 H 1.48493 * 109.47037 * 60.00063 * 20 18 16 24 24 H 1.08998 * 109.46910 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47051 * 299.99890 * 1 2 3 26 26 H 1.08996 * 109.46969 * 60.00598 * 1 2 3 27 27 H 1.08997 * 109.47190 * 239.99643 * 2 1 3 28 28 H 1.09006 * 109.46840 * 119.99376 * 2 1 3 29 29 H 1.09002 * 109.46796 * 30.00221 * 4 3 2 30 30 H 1.08995 * 109.46960 * 150.00105 * 4 3 2 31 31 H 1.08994 * 109.47109 * 185.00437 * 5 4 3 32 32 H 1.09003 * 109.46752 * 305.00366 * 5 4 3 33 33 H 1.08997 * 109.47385 * 300.00538 * 7 6 5 34 34 H 1.09008 * 109.47201 * 60.00617 * 7 6 5 35 35 H 1.09000 * 109.47307 * 180.02562 * 7 6 5 36 36 H 1.07997 * 119.95000 * 359.97438 * 11 10 8 37 37 H 1.08006 * 119.66105 * 179.72067 * 12 11 10 38 38 H 1.08004 * 119.71082 * 180.02562 * 13 12 11 39 39 H 1.07996 * 120.05920 * 180.02562 * 14 13 12 40 40 H 0.97002 * 119.99955 * 5.57054 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2567 2.0739 -1.2687 5 6 3.6996 1.8342 -1.7174 6 8 3.8853 0.4465 -2.0036 7 6 5.2067 0.1133 -2.4331 8 6 2.2483 2.0148 1.1672 9 8 2.5760 3.1859 1.1692 10 6 2.1026 1.2879 2.4416 11 6 2.8405 0.1313 2.6786 12 6 2.6965 -0.5501 3.8724 13 6 1.8238 -0.0906 4.8495 14 6 1.0854 1.0525 4.6467 15 6 1.2126 1.7643 3.4396 16 6 0.4606 2.9356 3.2218 17 1 0.0810 3.1580 2.2354 18 6 0.2049 3.8130 4.2859 19 7 0.9824 3.8106 5.3356 20 14 -1.2476 4.9847 4.2020 21 1 -1.2990 5.7990 5.4429 22 1 -1.0936 5.8805 3.0276 23 1 -2.5048 4.2058 4.0691 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.5724 1.6909 -2.0258 30 1 2.0902 3.1429 -1.1359 31 1 3.9036 2.4205 -2.6134 32 1 4.3820 2.1357 -0.9227 33 1 5.4425 0.6639 -3.3437 34 1 5.9202 0.3790 -1.6529 35 1 5.2656 -0.9570 -2.6304 36 1 3.5228 -0.2365 1.9265 37 1 3.2690 -1.4491 4.0472 38 1 1.7238 -0.6352 5.7768 39 1 0.4093 1.4027 5.4125 40 1 1.7818 3.2613 5.3458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600993266.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:55 Heat of formation + Delta-G solvation = -87.857031 kcal Electronic energy + Delta-G solvation = -22298.128936 eV Core-core repulsion = 19076.700828 eV Total energy + Delta-G solvation = -3221.428108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.17124 -39.21565 -38.51113 -36.77516 -35.72493 -32.78759 -31.70772 -31.32130 -29.88737 -27.35235 -26.95363 -24.95868 -24.23594 -22.99559 -22.72430 -20.37828 -19.45271 -18.17866 -17.70174 -17.13100 -16.89725 -16.59936 -16.28208 -15.95324 -15.73354 -15.29389 -14.95012 -14.67484 -14.34661 -14.18185 -14.00018 -13.75879 -13.40384 -13.07782 -12.96754 -12.85150 -12.78773 -12.64237 -12.43660 -12.17212 -12.01209 -11.95567 -11.81689 -11.39120 -10.91849 -10.74458 -10.50811 -9.70995 -9.50755 -9.46387 -9.14000 -6.49054 0.56546 0.88479 1.45333 1.59114 1.74485 1.91851 2.21812 2.31113 2.68562 2.82763 3.44691 3.86871 4.04626 4.13090 4.22436 4.25303 4.33253 4.41122 4.44069 4.52860 4.53572 4.60981 4.69077 4.77634 4.78792 4.84300 4.90131 4.93850 5.02502 5.11988 5.34679 5.38690 5.60531 5.72315 5.75148 5.82448 5.90909 6.14067 6.18671 6.31149 6.53005 6.74756 6.87440 7.41148 8.05314 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018359 B = 0.006203 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.808986 B = 4512.719593 C = 5210.991590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.107 3.893 3 N -0.605 5.605 4 C 0.113 3.887 5 C 0.056 3.944 6 O -0.401 6.401 7 C 0.027 3.973 8 C 0.580 3.420 9 O -0.589 6.589 10 C -0.254 4.254 11 C -0.053 4.053 12 C -0.232 4.232 13 C -0.077 4.077 14 C -0.218 4.218 15 C 0.105 3.895 16 C -0.538 4.538 17 H 0.052 0.948 18 C 0.005 3.995 19 N -0.818 5.818 20 Si 1.112 2.888 21 H -0.266 1.266 22 H -0.271 1.271 23 H -0.256 1.256 24 H 0.086 0.914 25 H 0.024 0.976 26 H 0.061 0.939 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.026 0.974 33 H 0.055 0.945 34 H 0.033 0.967 35 H 0.101 0.899 36 H 0.120 0.880 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.253 -8.592 -12.541 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.015 4.015 3 N -0.338 5.338 4 C -0.009 4.009 5 C -0.022 4.022 6 O -0.320 6.320 7 C -0.069 4.069 8 C 0.372 3.628 9 O -0.470 6.470 10 C -0.259 4.259 11 C -0.072 4.072 12 C -0.251 4.251 13 C -0.095 4.095 14 C -0.238 4.238 15 C 0.102 3.898 16 C -0.566 4.566 17 H 0.071 0.929 18 C -0.210 4.210 19 N -0.441 5.441 20 Si 0.929 3.071 21 H -0.190 1.190 22 H -0.197 1.197 23 H -0.180 1.180 24 H 0.104 0.896 25 H 0.044 0.956 26 H 0.080 0.920 27 H 0.121 0.879 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.120 0.880 36 H 0.138 0.862 37 H 0.153 0.847 38 H 0.143 0.857 39 H 0.106 0.894 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.490 -6.983 -11.642 13.657 hybrid contribution 1.295 -0.680 -0.610 1.585 sum 2.785 -7.663 -12.252 14.717 Atomic orbital electron populations 1.22104 0.95999 1.02812 1.00998 1.21779 0.94281 0.81269 1.04157 1.47948 1.65789 1.15345 1.04671 1.21570 0.95903 0.98146 0.85297 1.22879 0.96742 0.83236 0.99344 1.87827 1.31633 1.24787 1.87752 1.22898 0.82989 1.02542 0.98497 1.18526 0.74377 0.85349 0.84566 1.90633 1.49916 1.18327 1.88133 1.19781 1.06540 1.02155 0.97411 1.20903 0.96674 0.92385 0.97205 1.20765 1.05744 1.03546 0.95054 1.21108 0.94872 0.94921 0.98589 1.21140 1.05139 0.98318 0.99189 1.17708 0.88849 0.92173 0.91076 1.20415 1.31850 1.06460 0.97910 0.92943 1.28311 1.02834 0.99548 0.90356 1.70496 1.10644 1.32837 1.30138 0.83086 0.72184 0.74268 0.77540 1.18991 1.19659 1.18019 0.89556 0.95639 0.91986 0.87933 0.90410 0.87470 0.90324 0.89946 0.95561 0.92688 0.94808 0.88012 0.86240 0.84700 0.85654 0.89357 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.76 10.24 71.98 0.74 -4.03 16 2 C 0.11 3.30 5.77 86.38 0.50 3.80 16 3 N -0.61 -22.43 2.44 -825.66 -2.01 -24.44 16 4 C 0.11 3.45 5.85 86.38 0.51 3.95 16 5 C 0.06 1.48 6.28 71.98 0.45 1.93 16 6 O -0.40 -9.97 9.52 -148.98 -1.42 -11.39 16 7 C 0.03 0.48 11.01 113.37 1.25 1.73 16 8 C 0.58 27.97 6.29 86.67 0.55 28.51 16 9 O -0.59 -33.12 16.04 -4.06 -0.07 -33.19 16 10 C -0.25 -12.57 4.94 -19.70 -0.10 -12.67 16 11 C -0.05 -2.22 7.55 22.50 0.17 -2.05 16 12 C -0.23 -9.06 10.03 22.41 0.22 -8.83 16 13 C -0.08 -3.25 10.01 22.26 0.22 -3.02 16 14 C -0.22 -11.07 8.06 22.72 0.18 -10.89 16 15 C 0.11 5.75 5.08 -21.11 -0.11 5.64 16 16 C -0.54 -30.95 7.81 23.41 0.18 -30.76 16 17 H 0.05 3.13 7.59 -2.91 -0.02 3.11 16 18 C 0.00 0.27 4.96 85.37 0.42 0.69 16 19 N -0.82 -46.79 12.70 21.88 0.28 -46.52 16 20 Si 1.11 46.91 29.99 68.60 2.06 48.97 16 21 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 23 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 24 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.10 2.64 7.11 -2.39 -0.02 2.62 16 28 H 0.08 2.58 4.57 -2.38 -0.01 2.57 16 29 H 0.11 2.60 8.07 -2.39 -0.02 2.58 16 30 H 0.08 2.67 7.36 -2.39 -0.02 2.66 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.12 4.36 7.58 -2.91 -0.02 4.33 16 37 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 38 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.09 4.68 7.20 -2.91 -0.02 4.65 16 40 H 0.28 16.66 6.92 -92.71 -0.64 16.01 16 Total: -1.00 -70.28 333.54 5.18 -65.10 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 1.15 Total: 27.45 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 5.19 Total: -25.99 kcal Atomic # 7 Polarization: -69.22 SS G_CDS: -1.73 Total: -70.95 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -1.48 Total: -44.58 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.06 Total: 48.97 kcal Total: -70.28 5.18 -65.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600993266.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.753 kcal (2) G-P(sol) polarization free energy of solvation -70.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds