Wall clock time and date at job start Mon Mar 30 2020 01:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99795 * 2 1 4 4 C 1.53006 * 109.46840 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47300 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47221 * 179.97438 * 5 4 3 7 7 C 1.46498 * 120.00012 * 270.00051 * 6 5 4 8 8 C 1.34778 * 119.99951 * 89.99596 * 6 5 4 9 9 O 1.21608 * 120.00079 * 5.21923 * 8 6 5 10 10 C 1.47426 * 119.99809 * 185.21557 * 8 6 5 11 11 C 1.39230 * 120.28255 * 313.18066 * 10 8 6 12 12 C 1.38227 * 120.09015 * 180.28626 * 11 10 8 13 13 C 1.38829 * 120.67549 * 359.71235 * 12 11 10 14 14 C 1.37602 * 120.56941 * 0.02562 * 13 12 11 15 15 C 1.40703 * 119.88254 * 0.02562 * 14 13 12 16 16 C 1.40887 * 120.32728 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00225 * 149.55187 * 16 15 14 18 18 C 1.40267 * 120.00017 * 329.55573 * 16 15 14 19 19 N 1.30632 * 120.00038 * 336.32385 * 18 16 15 20 20 Si 1.86799 * 120.00287 * 156.32370 * 18 16 15 21 21 H 1.48501 * 109.47257 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.47230 * 300.00327 * 20 18 16 23 23 H 1.48503 * 109.46906 * 59.99817 * 20 18 16 24 24 H 1.09005 * 109.47465 * 300.00870 * 1 2 3 25 25 H 1.09005 * 109.47059 * 60.00308 * 1 2 3 26 26 H 1.08999 * 109.47458 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47717 * 59.99807 * 3 2 1 28 28 H 1.08998 * 109.47141 * 299.99405 * 3 2 1 29 29 H 1.09004 * 109.46971 * 59.99537 * 4 3 2 30 30 H 1.08998 * 109.46920 * 299.99727 * 4 3 2 31 31 H 1.09003 * 109.46908 * 59.99969 * 5 4 3 32 32 H 1.09003 * 109.46829 * 300.00198 * 5 4 3 33 33 H 1.09002 * 109.47107 * 265.64565 * 7 6 5 34 34 H 1.09003 * 109.46948 * 25.64164 * 7 6 5 35 35 H 1.09001 * 109.47338 * 145.64518 * 7 6 5 36 36 H 1.07994 * 119.95636 * 359.97438 * 11 10 8 37 37 H 1.07995 * 119.66147 * 179.74198 * 12 11 10 38 38 H 1.08002 * 119.71399 * 180.02562 * 13 12 11 39 39 H 1.07997 * 120.05461 * 180.02562 * 14 13 12 40 40 H 0.96999 * 119.99647 * 354.15397 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6183 2.4666 0.0012 7 6 6.3475 2.4097 1.2706 8 6 6.2909 2.4123 -1.1654 9 8 5.6970 2.5546 -2.2170 10 6 7.7469 2.1805 -1.1667 11 6 8.5729 2.8987 -0.3062 12 6 9.9381 2.6824 -0.3149 13 6 10.5016 1.7473 -1.1724 14 6 9.7105 1.0184 -2.0305 15 6 8.3180 1.2202 -2.0422 16 6 7.4991 0.4787 -2.9165 17 1 6.4837 0.2421 -2.6349 18 6 8.0026 0.0477 -4.1527 19 7 9.0039 0.6784 -4.7059 20 14 7.2413 -1.4282 -5.0081 21 1 7.9490 -1.6770 -6.2897 22 1 7.3625 -2.6232 -4.1350 23 1 5.8067 -1.1572 -5.2798 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6886 1.8465 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8574 0.6434 -0.8891 30 1 3.8567 0.6439 0.8909 31 1 3.8359 3.1238 0.8896 32 1 3.8365 3.1227 -0.8905 33 1 6.6767 3.4118 1.5457 34 1 5.6930 2.0160 2.0483 35 1 7.2153 1.7592 1.1623 36 1 8.1470 3.6293 0.3654 37 1 10.5728 3.2463 0.3526 38 1 11.5702 1.5905 -1.1659 39 1 10.1576 0.2928 -2.6937 40 1 9.3442 1.4938 -4.3055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601018624.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:30 Heat of formation + Delta-G solvation = -70.665612 kcal Electronic energy + Delta-G solvation = -21610.104999 eV Core-core repulsion = 18389.422367 eV Total energy + Delta-G solvation = -3220.682632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.39148 -37.99130 -37.11265 -35.17401 -33.94497 -32.40191 -29.95847 -29.39299 -27.33959 -26.25974 -25.47184 -24.58050 -22.26917 -21.21943 -20.93388 -18.86348 -17.71224 -16.54038 -16.49024 -15.94224 -15.65540 -15.03388 -14.85707 -14.60383 -14.08953 -14.01027 -13.79870 -13.24946 -12.60921 -12.56107 -12.23659 -12.10572 -12.05174 -11.90701 -11.78293 -11.63526 -11.23636 -11.06964 -10.92223 -10.73953 -10.66613 -10.37820 -10.06809 -9.72384 -9.56391 -9.04002 -8.74057 -8.12679 -7.74053 -7.64940 -7.22106 -4.48721 2.37427 2.74777 3.19025 3.29170 3.38710 3.41076 3.87924 3.91024 4.02843 4.55006 4.96097 5.05860 5.18873 5.30265 5.31665 5.38646 5.40268 5.45836 5.51279 5.56707 5.74153 5.77662 5.89139 6.01941 6.11005 6.16546 6.28040 6.38842 6.47437 6.77877 7.00088 7.05836 7.13917 7.28158 7.52142 7.61124 7.72329 7.83132 7.99719 8.18087 8.19626 8.67217 8.79194 9.17552 10.01147 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013498 B = 0.006128 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.959919 B = 4568.250081 C = 6260.151699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.067 3.933 4 C -0.136 4.136 5 C 0.124 3.876 6 N -0.628 5.628 7 C 0.085 3.915 8 C 0.581 3.419 9 O -0.535 6.535 10 C -0.260 4.260 11 C -0.047 4.047 12 C -0.263 4.263 13 C -0.073 4.073 14 C -0.210 4.210 15 C 0.128 3.872 16 C -0.482 4.482 17 H 0.079 0.921 18 C 0.040 3.960 19 N -0.785 5.785 20 Si 1.064 2.936 21 H -0.272 1.272 22 H -0.273 1.273 23 H -0.273 1.273 24 H 0.038 0.962 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.413 0.802 9.796 13.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.011 4.011 4 C -0.174 4.174 5 C 0.000 4.000 6 N -0.363 5.363 7 C -0.058 4.058 8 C 0.374 3.626 9 O -0.412 6.412 10 C -0.264 4.264 11 C -0.066 4.066 12 C -0.282 4.282 13 C -0.092 4.092 14 C -0.229 4.229 15 C 0.123 3.877 16 C -0.509 4.509 17 H 0.097 0.903 18 C -0.183 4.183 19 N -0.408 5.408 20 Si 0.887 3.113 21 H -0.197 1.197 22 H -0.199 1.199 23 H -0.198 1.198 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.425 -0.226 7.851 12.269 hybrid contribution -0.289 1.346 1.575 2.092 sum -9.714 1.119 9.426 13.582 Atomic orbital electron populations 1.22721 0.81356 1.02594 0.99796 1.87907 1.19434 1.28291 1.95383 1.22457 0.94165 0.84473 0.99964 1.21921 0.92515 0.98926 1.04085 1.21108 0.80828 0.95569 1.02496 1.47868 1.05617 1.76063 1.06802 1.21828 0.97706 1.01232 0.85028 1.18524 0.87754 0.74247 0.82095 1.90685 1.70343 1.49066 1.31076 1.19345 0.90898 1.06772 1.09420 1.20802 0.93664 0.96705 0.95428 1.20221 0.94243 1.06874 1.06880 1.20726 0.97527 0.95575 0.95339 1.21160 0.94019 1.03960 1.03725 1.17382 0.91655 0.88299 0.90324 1.20614 1.00687 1.27760 1.01858 0.90259 1.27113 0.94014 1.01715 0.95494 1.70374 1.18254 1.14213 1.37927 0.83653 0.76716 0.74355 0.76550 1.19709 1.19854 1.19841 0.94295 0.94110 0.89770 0.93516 0.93087 0.90310 0.91230 0.91359 0.89987 0.93423 0.92303 0.90116 0.88596 0.88945 0.88961 0.87517 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.39 -5.47 10.70 -35.23 -0.38 -5.84 16 3 C 0.07 0.84 5.94 37.16 0.22 1.06 16 4 C -0.14 -2.04 5.91 -26.73 -0.16 -2.20 16 5 C 0.12 1.88 5.43 -4.04 -0.02 1.86 16 6 N -0.63 -11.47 2.87 -182.84 -0.53 -11.99 16 7 C 0.09 1.26 9.02 59.85 0.54 1.80 16 8 C 0.58 13.64 6.60 -12.52 -0.08 13.56 16 9 O -0.54 -14.39 15.27 5.27 0.08 -14.31 16 10 C -0.26 -6.34 5.03 -104.37 -0.53 -6.87 16 11 C -0.05 -1.01 7.68 -39.22 -0.30 -1.31 16 12 C -0.26 -5.52 10.03 -39.37 -0.39 -5.91 16 13 C -0.07 -1.62 10.01 -39.60 -0.40 -2.01 16 14 C -0.21 -5.24 7.96 -38.88 -0.31 -5.55 16 15 C 0.13 3.39 5.21 -106.54 -0.56 2.83 16 16 C -0.48 -13.26 7.73 -37.82 -0.29 -13.55 16 17 H 0.08 2.25 7.14 -52.49 -0.37 1.88 16 18 C 0.04 1.04 4.95 -17.30 -0.09 0.95 16 19 N -0.79 -21.22 12.46 55.56 0.69 -20.53 16 20 Si 1.06 22.56 30.00 -169.99 -5.10 17.46 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.08 1.36 7.36 -51.93 -0.38 0.98 16 33 H 0.05 0.63 7.06 -51.93 -0.37 0.26 16 34 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16 35 H 0.08 1.33 6.09 -51.93 -0.32 1.02 16 36 H 0.10 1.77 6.08 -52.49 -0.32 1.45 16 37 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.11 2.73 6.82 -52.49 -0.36 2.37 16 40 H 0.30 8.34 6.78 -40.82 -0.28 8.07 16 LS Contribution 331.68 15.07 5.00 5.00 Total: -1.00 -31.12 331.68 -7.31 -38.43 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.83 Total: 5.71 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -1.25 Total: -13.91 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.17 Total: -32.52 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.30 Total: -20.16 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.10 Total: 17.46 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.12 -7.31 -38.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601018624.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.238 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds