Wall clock time and date at job start Mon Mar 30 2020 01:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99795 * 2 1 4 4 C 1.53006 * 109.46840 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47300 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47221 * 179.97438 * 5 4 3 7 7 C 1.46498 * 120.00012 * 270.00051 * 6 5 4 8 8 C 1.34778 * 119.99951 * 89.99596 * 6 5 4 9 9 O 1.21608 * 120.00079 * 5.21923 * 8 6 5 10 10 C 1.47426 * 119.99809 * 185.21557 * 8 6 5 11 11 C 1.39230 * 120.28255 * 313.18066 * 10 8 6 12 12 C 1.38227 * 120.09015 * 180.28626 * 11 10 8 13 13 C 1.38829 * 120.67549 * 359.71235 * 12 11 10 14 14 C 1.37602 * 120.56941 * 0.02562 * 13 12 11 15 15 C 1.40703 * 119.88254 * 0.02562 * 14 13 12 16 16 C 1.40887 * 120.32728 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00225 * 149.55187 * 16 15 14 18 18 C 1.40267 * 120.00017 * 329.55573 * 16 15 14 19 19 N 1.30632 * 120.00038 * 336.32385 * 18 16 15 20 20 Si 1.86799 * 120.00287 * 156.32370 * 18 16 15 21 21 H 1.48501 * 109.47257 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.47230 * 300.00327 * 20 18 16 23 23 H 1.48503 * 109.46906 * 59.99817 * 20 18 16 24 24 H 1.09005 * 109.47465 * 300.00870 * 1 2 3 25 25 H 1.09005 * 109.47059 * 60.00308 * 1 2 3 26 26 H 1.08999 * 109.47458 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47717 * 59.99807 * 3 2 1 28 28 H 1.08998 * 109.47141 * 299.99405 * 3 2 1 29 29 H 1.09004 * 109.46971 * 59.99537 * 4 3 2 30 30 H 1.08998 * 109.46920 * 299.99727 * 4 3 2 31 31 H 1.09003 * 109.46908 * 59.99969 * 5 4 3 32 32 H 1.09003 * 109.46829 * 300.00198 * 5 4 3 33 33 H 1.09002 * 109.47107 * 265.64565 * 7 6 5 34 34 H 1.09003 * 109.46948 * 25.64164 * 7 6 5 35 35 H 1.09001 * 109.47338 * 145.64518 * 7 6 5 36 36 H 1.07994 * 119.95636 * 359.97438 * 11 10 8 37 37 H 1.07995 * 119.66147 * 179.74198 * 12 11 10 38 38 H 1.08002 * 119.71399 * 180.02562 * 13 12 11 39 39 H 1.07997 * 120.05461 * 180.02562 * 14 13 12 40 40 H 0.96999 * 119.99647 * 354.15397 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6183 2.4666 0.0012 7 6 6.3475 2.4097 1.2706 8 6 6.2909 2.4123 -1.1654 9 8 5.6970 2.5546 -2.2170 10 6 7.7469 2.1805 -1.1667 11 6 8.5729 2.8987 -0.3062 12 6 9.9381 2.6824 -0.3149 13 6 10.5016 1.7473 -1.1724 14 6 9.7105 1.0184 -2.0305 15 6 8.3180 1.2202 -2.0422 16 6 7.4991 0.4787 -2.9165 17 1 6.4837 0.2421 -2.6349 18 6 8.0026 0.0477 -4.1527 19 7 9.0039 0.6784 -4.7059 20 14 7.2413 -1.4282 -5.0081 21 1 7.9490 -1.6770 -6.2897 22 1 7.3625 -2.6232 -4.1350 23 1 5.8067 -1.1572 -5.2798 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6886 1.8465 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8574 0.6434 -0.8891 30 1 3.8567 0.6439 0.8909 31 1 3.8359 3.1238 0.8896 32 1 3.8365 3.1227 -0.8905 33 1 6.6767 3.4118 1.5457 34 1 5.6930 2.0160 2.0483 35 1 7.2153 1.7592 1.1623 36 1 8.1470 3.6293 0.3654 37 1 10.5728 3.2463 0.3526 38 1 11.5702 1.5905 -1.1659 39 1 10.1576 0.2928 -2.6937 40 1 9.3442 1.4938 -4.3055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601018624.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:30 Heat of formation + Delta-G solvation = -90.274960 kcal Electronic energy + Delta-G solvation = -21610.955324 eV Core-core repulsion = 18389.422367 eV Total energy + Delta-G solvation = -3221.532958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08706 -39.15902 -38.74404 -36.78470 -35.81000 -33.72401 -31.73039 -31.20043 -28.38952 -27.60570 -27.08623 -25.99399 -23.75621 -22.90808 -22.49566 -20.55969 -19.54632 -18.07165 -17.64632 -17.07526 -17.01929 -16.65588 -16.43351 -16.07427 -15.74174 -15.38723 -15.15432 -14.75010 -14.37531 -14.20034 -14.00970 -13.66946 -13.26880 -13.20695 -13.08542 -12.94033 -12.71867 -12.62493 -12.50371 -12.07821 -12.02853 -11.91005 -11.85671 -11.42145 -10.95868 -10.65745 -10.56105 -9.67182 -9.57759 -9.51394 -9.19353 -6.50562 0.52987 0.90257 1.42320 1.57474 1.72092 1.92289 2.23919 2.26844 2.64781 2.87472 3.48920 3.78992 4.05975 4.09079 4.18933 4.25753 4.36661 4.38298 4.44666 4.46367 4.50439 4.53553 4.61869 4.73423 4.76125 4.82173 4.91254 4.94205 5.04832 5.13186 5.13838 5.37171 5.59638 5.71497 5.74104 5.80562 5.92947 6.13374 6.21513 6.32323 6.49094 6.75222 6.83400 7.43356 7.97913 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013498 B = 0.006128 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.959919 B = 4568.250081 C = 6260.151699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.424 6.424 3 C 0.071 3.929 4 C -0.128 4.128 5 C 0.122 3.878 6 N -0.620 5.620 7 C 0.078 3.922 8 C 0.572 3.428 9 O -0.586 6.586 10 C -0.274 4.274 11 C -0.044 4.044 12 C -0.244 4.244 13 C -0.072 4.072 14 C -0.232 4.232 15 C 0.101 3.899 16 C -0.525 4.525 17 H 0.052 0.948 18 C 0.005 3.995 19 N -0.809 5.809 20 Si 1.109 2.891 21 H -0.260 1.260 22 H -0.257 1.257 23 H -0.273 1.273 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.027 0.973 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.124 0.876 39 H 0.089 0.911 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.754 1.940 13.046 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.344 6.344 3 C -0.006 4.006 4 C -0.167 4.167 5 C 0.000 4.000 6 N -0.353 5.353 7 C -0.064 4.064 8 C 0.364 3.636 9 O -0.467 6.467 10 C -0.279 4.279 11 C -0.062 4.062 12 C -0.263 4.263 13 C -0.090 4.090 14 C -0.251 4.251 15 C 0.098 3.902 16 C -0.553 4.553 17 H 0.070 0.930 18 C -0.211 4.211 19 N -0.431 5.431 20 Si 0.926 3.074 21 H -0.184 1.184 22 H -0.181 1.181 23 H -0.198 1.198 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.113 0.887 27 H 0.100 0.900 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.095 0.905 31 H 0.138 0.862 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.142 0.858 39 H 0.107 0.893 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.768 0.919 11.173 14.870 hybrid contribution -0.172 1.150 0.849 1.440 sum -9.940 2.070 12.022 15.736 Atomic orbital electron populations 1.22944 0.79205 1.03827 1.01075 1.87855 1.21871 1.29031 1.95657 1.22422 0.92138 0.84503 1.01543 1.21809 0.94759 0.98292 1.01871 1.21343 0.78839 0.95878 1.03979 1.47869 1.07070 1.73895 1.06497 1.22092 0.97685 1.02659 0.83919 1.18589 0.87787 0.74205 0.83011 1.90647 1.71111 1.51605 1.33322 1.19730 0.92305 1.06444 1.09413 1.21187 0.93731 0.96360 0.94925 1.20787 0.94569 1.05237 1.05665 1.21128 0.98995 0.94756 0.94148 1.21132 0.93868 1.05109 1.04992 1.17747 0.92609 0.88990 0.90896 1.20540 0.99905 1.31276 1.03545 0.93007 1.28343 0.93815 1.03347 0.95642 1.70491 1.20186 1.14338 1.38125 0.83133 0.75900 0.72055 0.76337 1.18418 1.18112 1.19817 0.92166 0.93599 0.88720 0.89965 0.93306 0.95388 0.90492 0.86202 0.91946 0.90714 0.88573 0.92063 0.84845 0.84567 0.85820 0.89253 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.42 -11.49 10.70 -148.98 -1.59 -13.08 16 3 C 0.07 1.69 5.94 71.98 0.43 2.12 16 4 C -0.13 -3.84 5.91 30.60 0.18 -3.66 16 5 C 0.12 3.52 5.43 86.38 0.47 3.99 16 6 N -0.62 -21.89 2.87 -850.65 -2.44 -24.34 16 7 C 0.08 2.03 9.02 127.77 1.15 3.18 16 8 C 0.57 27.48 6.60 86.66 0.57 28.06 16 9 O -0.59 -33.35 15.27 -4.06 -0.06 -33.42 16 10 C -0.27 -13.53 5.03 -19.70 -0.10 -13.63 16 11 C -0.04 -1.75 7.68 22.51 0.17 -1.57 16 12 C -0.24 -9.31 10.03 22.41 0.22 -9.08 16 13 C -0.07 -3.06 10.01 22.26 0.22 -2.84 16 14 C -0.23 -11.89 7.96 22.72 0.18 -11.71 16 15 C 0.10 5.62 5.21 -21.11 -0.11 5.51 16 16 C -0.52 -30.94 7.73 23.41 0.18 -30.75 16 17 H 0.05 3.22 7.14 -2.91 -0.02 3.20 16 18 C 0.01 0.29 4.95 85.36 0.42 0.71 16 19 N -0.81 -46.24 12.46 21.88 0.27 -45.96 16 20 Si 1.11 47.90 30.00 68.60 2.06 49.96 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 22 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 24 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.12 2.27 8.07 -2.39 -0.02 2.25 16 32 H 0.06 2.08 7.36 -2.39 -0.02 2.06 16 33 H 0.07 1.58 7.06 -2.39 -0.02 1.56 16 34 H 0.10 1.81 8.04 -2.39 -0.02 1.80 16 35 H 0.06 1.86 6.09 -2.39 -0.01 1.85 16 36 H 0.13 4.30 6.08 -2.91 -0.02 4.28 16 37 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 38 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 39 H 0.09 4.81 6.82 -2.91 -0.02 4.79 16 40 H 0.28 16.77 6.78 -92.71 -0.63 16.14 16 Total: -1.00 -74.72 331.68 4.64 -70.08 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 1.16 Total: 24.73 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 5.25 Total: -27.98 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -2.17 Total: -70.30 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -1.66 Total: -46.50 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.06 Total: 49.96 kcal Total: -74.72 4.64 -70.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601018624.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.192 kcal (2) G-P(sol) polarization free energy of solvation -74.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds