Wall clock time and date at job start Mon Mar 30 2020 01:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.47284 * 2 1 4 4 C 1.42900 * 113.99824 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46779 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47143 * 65.00263 * 5 4 3 7 7 C 1.46500 * 119.99847 * 269.99702 * 6 5 4 8 8 C 1.34771 * 120.00005 * 89.99881 * 6 5 4 9 9 O 1.21609 * 120.00202 * 4.63820 * 8 6 5 10 10 C 1.47433 * 120.00115 * 184.63307 * 8 6 5 11 11 C 1.39222 * 120.28461 * 309.26510 * 10 8 6 12 12 C 1.38220 * 120.09703 * 180.27707 * 11 10 8 13 13 C 1.38830 * 120.67315 * 359.71840 * 12 11 10 14 14 C 1.37603 * 120.56744 * 0.02562 * 13 12 11 15 15 C 1.40706 * 119.88351 * 359.97438 * 14 13 12 16 16 C 1.40885 * 120.32734 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99993 * 214.26828 * 16 15 14 18 18 C 1.40278 * 120.00014 * 34.26674 * 16 15 14 19 19 N 1.30622 * 119.99946 * 193.88218 * 18 16 15 20 20 Si 1.86803 * 119.99740 * 13.88855 * 18 16 15 21 21 H 1.48493 * 109.46904 * 267.86594 * 20 18 16 22 22 H 1.48495 * 109.47343 * 27.86939 * 20 18 16 23 23 H 1.48506 * 109.46649 * 147.86801 * 20 18 16 24 24 H 1.08996 * 109.46993 * 59.99514 * 1 2 3 25 25 H 1.08995 * 109.47442 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46778 * 300.00140 * 1 2 3 27 27 H 1.08995 * 109.46960 * 239.99697 * 2 1 3 28 28 H 1.09003 * 109.46880 * 120.00106 * 2 1 3 29 29 H 1.09000 * 109.47000 * 59.99985 * 4 3 2 30 30 H 1.08999 * 109.47257 * 300.00259 * 4 3 2 31 31 H 1.08997 * 109.47026 * 304.99534 * 5 4 3 32 32 H 1.09003 * 109.46905 * 185.00220 * 5 4 3 33 33 H 1.09000 * 109.47244 * 272.98062 * 7 6 5 34 34 H 1.09002 * 109.47178 * 32.97974 * 7 6 5 35 35 H 1.08995 * 109.47243 * 152.97990 * 7 6 5 36 36 H 1.08003 * 119.95080 * 359.97438 * 11 10 8 37 37 H 1.08001 * 119.66745 * 179.73843 * 12 11 10 38 38 H 1.07998 * 119.71962 * 180.02562 * 13 12 11 39 39 H 1.08004 * 120.05346 * 180.02562 * 14 13 12 40 40 H 0.97006 * 119.99966 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8255 2.9383 0.0012 6 7 3.3870 3.5602 1.2530 7 6 2.0569 4.1679 1.3424 8 6 4.2071 3.5734 2.3224 9 8 5.3411 3.1452 2.2243 10 6 3.7296 4.1071 3.6111 11 6 3.1248 5.3596 3.6715 12 6 2.6838 5.8586 4.8827 13 6 2.8312 5.1200 6.0490 14 6 3.4203 3.8768 6.0201 15 6 3.8778 3.3459 4.8000 16 6 4.4818 2.0737 4.7597 17 1 5.2818 1.8777 4.0611 18 6 4.0442 1.0617 5.6269 19 7 4.7633 -0.0169 5.7875 20 14 2.4328 1.2564 6.5517 21 1 2.6942 1.8733 7.8769 22 1 1.5168 2.1273 5.7722 23 1 1.8067 -0.0768 6.7411 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8341 0.9763 -0.8892 30 1 3.8333 0.9766 0.8908 31 1 3.3500 3.4415 -0.8407 32 1 4.9083 3.0254 -0.0880 33 1 2.1068 5.2029 1.0041 34 1 1.3610 3.6132 0.7131 35 1 1.7134 4.1398 2.3764 36 1 3.0045 5.9443 2.7715 37 1 2.2194 6.8329 4.9222 38 1 2.4807 5.5247 6.9869 39 1 3.5304 3.3092 6.9324 40 1 4.4605 -0.7169 6.3869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601405721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:12 Heat of formation + Delta-G solvation = -63.431344 kcal Electronic energy + Delta-G solvation = -22213.321780 eV Core-core repulsion = 18992.952849 eV Total energy + Delta-G solvation = -3220.368931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.41563 -37.86136 -36.97725 -34.82930 -33.64401 -31.73226 -30.53702 -30.33010 -28.65580 -26.06394 -25.23572 -23.20607 -22.67067 -21.70764 -20.85413 -18.62588 -17.42916 -16.82696 -16.26652 -16.04778 -15.48864 -15.18912 -15.00319 -14.25620 -13.97682 -13.81144 -13.40336 -13.16355 -12.72225 -12.58529 -12.46553 -12.23289 -12.00956 -11.85047 -11.67246 -11.56298 -11.50715 -11.18231 -10.89617 -10.89224 -10.70303 -10.41662 -10.04958 -9.83078 -9.41558 -9.23517 -8.70071 -8.02183 -7.75798 -7.65471 -6.97006 -4.54921 2.24216 2.60059 3.06288 3.14179 3.25909 3.61081 3.77221 3.92295 3.98003 4.47147 5.10829 5.21871 5.28671 5.33175 5.40332 5.47580 5.54871 5.66782 5.71646 5.76290 5.90207 5.94561 5.98141 6.02384 6.10564 6.12291 6.17559 6.34163 6.37271 6.55567 6.79271 7.08591 7.11534 7.26091 7.38584 7.44709 7.59249 7.77476 8.00926 8.14883 8.40709 8.60234 8.78367 9.16287 10.03150 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.007578 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.664036 B = 3693.868259 C = 4514.290282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.057 3.943 3 O -0.385 6.385 4 C 0.045 3.955 5 C 0.124 3.876 6 N -0.617 5.617 7 C 0.085 3.915 8 C 0.584 3.416 9 O -0.545 6.545 10 C -0.239 4.239 11 C -0.046 4.046 12 C -0.251 4.251 13 C -0.066 4.066 14 C -0.231 4.231 15 C 0.126 3.874 16 C -0.434 4.434 17 H 0.111 0.889 18 C 0.083 3.917 19 N -0.797 5.797 20 Si 0.908 3.092 21 H -0.267 1.267 22 H -0.243 1.243 23 H -0.289 1.289 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.042 0.958 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.328 2.008 -8.657 12.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.304 6.304 4 C -0.033 4.033 5 C 0.000 4.000 6 N -0.352 5.352 7 C -0.058 4.058 8 C 0.377 3.623 9 O -0.422 6.422 10 C -0.243 4.243 11 C -0.064 4.064 12 C -0.270 4.270 13 C -0.084 4.084 14 C -0.250 4.250 15 C 0.122 3.878 16 C -0.462 4.462 17 H 0.129 0.871 18 C -0.137 4.137 19 N -0.420 5.420 20 Si 0.734 3.266 21 H -0.193 1.193 22 H -0.167 1.167 23 H -0.217 1.217 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.744 1.653 -8.633 11.715 hybrid contribution -0.531 -0.374 0.525 0.835 sum -8.275 1.279 -8.108 11.656 Atomic orbital electron populations 1.21719 0.94047 1.01909 1.02933 1.22410 0.95319 0.84374 0.99908 1.87846 1.21273 1.25894 1.95427 1.23029 0.81266 0.98287 1.00674 1.21323 1.00948 0.90885 0.86795 1.47686 1.16672 1.59098 1.11717 1.21829 0.83875 0.96223 1.03856 1.18426 0.84139 0.76617 0.83132 1.90666 1.19337 1.48004 1.84197 1.19401 1.13546 0.99155 0.92190 1.20783 0.94878 0.94102 0.96681 1.20293 1.12765 1.00966 0.92993 1.20736 0.96499 0.94453 0.96757 1.21103 1.09650 0.97206 0.97054 1.17460 0.88172 0.92967 0.89238 1.19876 1.16288 0.93672 1.16316 0.87083 1.26301 0.98636 0.94630 0.94144 1.69595 1.36147 1.06978 1.29326 0.86375 0.82343 0.77463 0.80434 1.19303 1.16657 1.21666 0.92173 0.91461 0.91741 0.93939 0.93317 0.93137 0.92226 0.90593 0.88677 0.93984 0.91347 0.90063 0.88248 0.88463 0.88584 0.87722 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 37.16 0.38 -1.27 16 2 C 0.06 0.75 6.66 37.16 0.25 1.00 16 3 O -0.38 -6.03 9.12 -35.23 -0.32 -6.35 16 4 C 0.05 0.71 6.28 37.16 0.23 0.95 16 5 C 0.12 1.97 5.86 -4.04 -0.02 1.94 16 6 N -0.62 -11.61 2.84 -182.85 -0.52 -12.13 16 7 C 0.09 1.36 8.97 59.85 0.54 1.90 16 8 C 0.58 13.62 6.70 -12.52 -0.08 13.54 16 9 O -0.54 -14.39 14.83 5.27 0.08 -14.31 16 10 C -0.24 -5.69 4.89 -104.37 -0.51 -6.20 16 11 C -0.05 -0.94 7.64 -39.22 -0.30 -1.24 16 12 C -0.25 -4.98 10.03 -39.37 -0.39 -5.38 16 13 C -0.07 -1.38 10.01 -39.59 -0.40 -1.78 16 14 C -0.23 -5.52 7.14 -38.88 -0.28 -5.80 16 15 C 0.13 3.27 5.05 -106.54 -0.54 2.73 16 16 C -0.43 -12.21 8.84 -37.81 -0.33 -12.54 16 17 H 0.11 3.48 6.38 -52.49 -0.34 3.14 16 18 C 0.08 2.21 5.44 -17.30 -0.09 2.12 16 19 N -0.80 -21.52 13.92 55.56 0.77 -20.75 16 20 Si 0.91 20.65 24.54 -169.99 -4.17 16.48 16 21 H -0.27 -5.83 6.66 56.52 0.38 -5.46 16 22 H -0.24 -5.62 6.90 56.52 0.39 -5.23 16 23 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 0.99 8.07 -51.93 -0.42 0.57 16 32 H 0.10 1.55 7.36 -51.93 -0.38 1.17 16 33 H 0.04 0.57 7.62 -51.93 -0.40 0.18 16 34 H 0.07 1.00 7.07 -51.93 -0.37 0.64 16 35 H 0.08 1.43 5.73 -51.93 -0.30 1.13 16 36 H 0.10 1.76 6.73 -52.48 -0.35 1.41 16 37 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.11 2.48 4.94 -52.48 -0.26 2.22 16 40 H 0.29 6.94 8.29 -40.82 -0.34 6.60 16 LS Contribution 325.04 15.07 4.90 4.90 Total: -1.00 -30.61 325.04 -6.60 -37.21 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.79 Total: 5.00 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -1.55 Total: -10.04 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.25 Total: -32.88 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.24 Total: -20.66 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.17 Total: 16.48 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.61 -6.60 -37.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601405721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.224 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds