Wall clock time and date at job start Mon Mar 30 2020 01:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00034 * 2 1 4 4 C 1.38773 * 120.02783 * 0.27798 * 3 2 1 5 5 C 1.38173 * 120.05449 * 180.27268 * 4 3 2 6 6 C 1.38182 * 120.11153 * 359.72171 * 5 4 3 7 7 C 1.38771 * 120.05126 * 0.02562 * 6 5 4 8 8 O 1.35895 * 120.02692 * 180.02562 * 7 6 5 9 9 C 1.42894 * 117.00053 * 359.97217 * 8 7 6 10 10 C 1.38634 * 119.94837 * 359.97438 * 7 6 5 11 11 C 1.50701 * 120.05737 * 180.02562 * 10 7 6 12 12 N 1.46502 * 109.46953 * 89.99982 * 11 10 7 13 13 C 1.36939 * 119.99683 * 269.99849 * 12 11 10 14 14 H 1.07997 * 120.00124 * 140.00853 * 13 12 11 15 15 C 1.38818 * 120.00002 * 320.00972 * 13 12 11 16 16 N 1.31620 * 119.99995 * 340.76642 * 15 13 12 17 17 Si 1.86796 * 119.99995 * 160.76865 * 15 13 12 18 18 H 1.48502 * 109.47045 * 89.99608 * 17 15 13 19 19 H 1.48500 * 109.47164 * 209.99931 * 17 15 13 20 20 H 1.48498 * 109.47295 * 330.00107 * 17 15 13 21 21 C 1.46491 * 120.00299 * 90.00469 * 12 11 10 22 22 C 1.52998 * 117.49937 * 183.19131 * 21 12 11 23 23 C 1.52996 * 117.50361 * 114.53092 * 21 12 11 24 24 H 1.08995 * 109.46602 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46715 * 299.99778 * 1 2 3 26 26 H 1.08999 * 109.46690 * 59.99652 * 1 2 3 27 27 H 1.07997 * 119.97155 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.94981 * 179.75017 * 5 4 3 29 29 H 1.07994 * 119.97293 * 179.97438 * 6 5 4 30 30 H 1.08997 * 109.47541 * 179.97438 * 9 8 7 31 31 H 1.09006 * 109.47528 * 300.00664 * 9 8 7 32 32 H 1.08999 * 109.47122 * 60.00086 * 9 8 7 33 33 H 1.08997 * 109.46601 * 329.99718 * 11 10 7 34 34 H 1.08996 * 109.47191 * 209.99707 * 11 10 7 35 35 H 0.96995 * 119.99672 * 175.02804 * 16 15 13 36 36 H 1.09001 * 115.55050 * 328.85758 * 21 12 11 37 37 H 1.08997 * 117.50301 * 359.97438 * 22 21 12 38 38 H 1.09010 * 117.49851 * 145.01692 * 22 21 12 39 39 H 1.08995 * 117.50160 * 214.97953 * 23 21 12 40 40 H 1.08999 * 117.49511 * 359.97368 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2908 2.3751 0.0058 5 6 1.9175 3.6065 0.0001 6 6 3.2972 3.6821 -0.0056 7 6 4.0568 2.5208 -0.0061 8 8 5.4137 2.5958 -0.0112 9 6 5.9912 3.9029 -0.0164 10 6 3.4305 1.2841 -0.0004 11 6 4.2530 0.0214 -0.0004 12 7 4.5251 -0.3842 1.3808 13 6 5.6459 0.0736 2.0206 14 1 5.5945 0.3621 3.0601 15 6 6.8483 0.1667 1.3332 16 7 7.0247 -0.5141 0.2206 17 14 8.2159 1.2582 1.9871 18 1 9.0841 0.4711 2.8992 19 1 9.0256 1.7706 0.8525 20 1 7.6253 2.4007 2.7294 21 6 3.5982 -1.2795 2.0774 22 6 3.8980 -1.6065 3.5417 23 6 4.1116 -2.6689 2.4606 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2123 2.3185 0.0108 28 1 1.3280 4.5115 0.0006 29 1 3.7847 4.6458 -0.0104 30 1 7.0780 3.8200 -0.0197 31 1 5.6648 4.4409 -0.9064 32 1 5.6713 4.4450 0.8735 33 1 5.1949 0.2014 -0.5185 34 1 3.7036 -0.7702 -0.5099 35 1 7.8357 -0.3941 -0.2979 36 1 2.5517 -1.1926 1.7853 37 1 4.7851 -1.1558 3.9866 38 1 3.0487 -1.7351 4.2128 39 1 3.4028 -3.4960 2.4209 40 1 5.1389 -2.9170 2.1940 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602448298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:09 Heat of formation + Delta-G solvation = 10.211759 kcal Electronic energy + Delta-G solvation = -22894.290686 eV Core-core repulsion = 19677.115160 eV Total energy + Delta-G solvation = -3217.175527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.95656 -38.37982 -36.71220 -35.78028 -33.47576 -31.52556 -29.44477 -28.97110 -27.37637 -26.43987 -25.31280 -23.42966 -21.25813 -21.19943 -20.84175 -19.48232 -17.98319 -16.25287 -16.16510 -15.75133 -15.51319 -15.21508 -14.94330 -14.84072 -14.40779 -14.26340 -13.62998 -12.92414 -12.69871 -12.66120 -12.17543 -12.00414 -11.72069 -11.52170 -11.17529 -11.04579 -10.97103 -10.78892 -10.58762 -10.37699 -10.23419 -10.20725 -9.80594 -9.62455 -9.40553 -9.10965 -8.27107 -7.63811 -7.51813 -6.33323 -5.60293 -3.24162 1.95497 2.02176 3.38659 3.45794 3.51355 3.52462 4.24728 4.31303 4.62210 5.14166 5.16613 5.32421 5.36386 5.42853 5.49056 5.53889 5.55790 5.59254 5.62621 5.67466 5.78735 5.92079 6.07512 6.16149 6.31161 6.47837 6.61903 6.64662 6.64928 6.79093 6.87420 6.90095 7.01146 7.24827 7.30471 7.40033 7.84287 7.91236 7.96453 8.14649 8.69163 9.34158 9.96620 10.55718 11.35532 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014186 B = 0.009845 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.294383 B = 2843.320958 C = 4334.679586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.305 6.305 3 C 0.157 3.843 4 C -0.252 4.252 5 C -0.064 4.064 6 C -0.252 4.252 7 C 0.180 3.820 8 O -0.274 6.274 9 C 0.027 3.973 10 C -0.138 4.138 11 C 0.197 3.803 12 N -0.539 5.539 13 C -0.251 4.251 14 H 0.055 0.945 15 C 0.035 3.965 16 N -0.879 5.879 17 Si 0.886 3.114 18 H -0.291 1.291 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.129 3.871 22 C -0.201 4.201 23 C -0.222 4.222 24 H 0.094 0.906 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.107 0.893 34 H 0.038 0.962 35 H 0.252 0.748 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.145 6.322 -1.949 12.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.218 6.218 3 C 0.111 3.889 4 C -0.272 4.272 5 C -0.083 4.083 6 C -0.271 4.271 7 C 0.133 3.867 8 O -0.185 6.185 9 C -0.068 4.068 10 C -0.142 4.142 11 C 0.072 3.928 12 N -0.254 5.254 13 C -0.381 4.381 14 H 0.073 0.927 15 C -0.166 4.166 16 N -0.521 5.521 17 Si 0.716 3.284 18 H -0.218 1.218 19 H -0.215 1.215 20 H -0.204 1.204 21 C 0.020 3.980 22 C -0.239 4.239 23 C -0.263 4.263 24 H 0.112 0.888 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.137 0.863 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.704 5.908 -2.055 11.545 hybrid contribution 0.408 1.179 0.473 1.334 sum -9.296 7.087 -1.582 11.796 Atomic orbital electron populations 1.22953 0.79596 1.03230 1.00742 1.86131 1.20128 1.26942 1.88576 1.18485 0.91291 0.83651 0.95489 1.20938 0.99131 0.92511 1.14573 1.20408 0.93631 0.96461 0.97773 1.21056 0.94792 0.97211 1.14087 1.18489 0.82858 0.92522 0.92875 1.86407 1.16629 1.28133 1.87294 1.22967 0.99097 0.84465 1.00314 1.19733 0.90767 0.97195 1.06539 1.19662 0.98221 0.87899 0.87058 1.43245 1.22174 1.48964 1.11056 1.18831 0.85595 1.37339 0.96292 0.92722 1.25000 0.96223 0.97515 0.97868 1.70019 1.26650 1.38571 1.16832 0.86604 0.82408 0.81426 0.77991 1.21824 1.21507 1.20407 1.21268 0.93386 0.90612 0.92762 1.23019 1.02487 1.05523 0.92862 1.23332 1.02371 0.94099 1.06467 0.88769 0.93151 0.93241 0.86483 0.86746 0.86337 0.89145 0.93426 0.93208 0.87587 0.94367 0.93792 0.89122 0.88656 0.91210 0.91539 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.30 -5.40 8.30 -19.41 -0.16 -5.56 16 3 C 0.16 2.99 6.66 -39.24 -0.26 2.73 16 4 C -0.25 -4.09 9.04 -39.41 -0.36 -4.45 16 5 C -0.06 -1.00 10.04 -39.63 -0.40 -1.40 16 6 C -0.25 -4.36 9.04 -39.41 -0.36 -4.71 16 7 C 0.18 3.74 6.66 -39.24 -0.26 3.48 16 8 O -0.27 -5.92 9.06 -19.41 -0.18 -6.09 16 9 C 0.03 0.45 9.81 101.05 0.99 1.44 16 10 C -0.14 -3.03 5.49 -104.33 -0.57 -3.60 16 11 C 0.20 4.88 5.02 -5.19 -0.03 4.85 16 12 N -0.54 -13.85 2.73 -167.03 -0.46 -14.31 16 13 C -0.25 -6.91 8.45 -15.06 -0.13 -7.04 16 14 H 0.06 1.55 6.77 -52.49 -0.36 1.19 16 15 C 0.03 0.96 4.51 -17.43 -0.08 0.88 16 16 N -0.88 -25.23 11.51 55.49 0.64 -24.59 16 17 Si 0.89 21.78 29.60 -169.99 -5.03 16.75 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 C 0.13 2.96 6.56 -67.94 -0.45 2.52 16 22 C -0.20 -4.28 9.80 -26.70 -0.26 -4.54 16 23 C -0.22 -4.85 10.36 -26.70 -0.28 -5.13 16 24 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.56 7.65 -51.93 -0.40 0.17 16 26 H 0.05 0.52 7.67 -51.93 -0.40 0.13 16 27 H 0.12 1.55 6.29 -52.49 -0.33 1.22 16 28 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.12 1.75 6.29 -52.49 -0.33 1.42 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 31 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 32 H 0.05 0.75 7.66 -51.93 -0.40 0.36 16 33 H 0.11 2.92 5.00 -51.93 -0.26 2.66 16 34 H 0.04 0.94 7.45 -51.93 -0.39 0.55 16 35 H 0.25 7.02 8.32 -40.82 -0.34 6.68 16 36 H 0.09 1.98 6.87 -51.93 -0.36 1.62 16 37 H 0.10 2.20 6.48 -51.93 -0.34 1.86 16 38 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.09 2.25 8.14 -51.93 -0.42 1.83 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -30.74 326.63 -7.32 -38.06 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.62 Total: 4.43 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -1.44 Total: -13.60 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.18 Total: -38.90 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.34 Total: -11.65 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.74 -7.32 -38.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602448298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.267 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds