Wall clock time and date at job start Mon Mar 30 2020 01:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00034 * 2 1 4 4 C 1.38773 * 120.02783 * 0.27798 * 3 2 1 5 5 C 1.38173 * 120.05449 * 180.27268 * 4 3 2 6 6 C 1.38182 * 120.11153 * 359.72171 * 5 4 3 7 7 C 1.38771 * 120.05126 * 0.02562 * 6 5 4 8 8 O 1.35895 * 120.02692 * 180.02562 * 7 6 5 9 9 C 1.42894 * 117.00053 * 359.97217 * 8 7 6 10 10 C 1.38634 * 119.94837 * 359.97438 * 7 6 5 11 11 C 1.50701 * 120.05737 * 180.02562 * 10 7 6 12 12 N 1.46502 * 109.46953 * 89.99982 * 11 10 7 13 13 C 1.36939 * 119.99683 * 269.99849 * 12 11 10 14 14 H 1.07997 * 120.00124 * 140.00853 * 13 12 11 15 15 C 1.38818 * 120.00002 * 320.00972 * 13 12 11 16 16 N 1.31620 * 119.99995 * 340.76642 * 15 13 12 17 17 Si 1.86796 * 119.99995 * 160.76865 * 15 13 12 18 18 H 1.48502 * 109.47045 * 89.99608 * 17 15 13 19 19 H 1.48500 * 109.47164 * 209.99931 * 17 15 13 20 20 H 1.48498 * 109.47295 * 330.00107 * 17 15 13 21 21 C 1.46491 * 120.00299 * 90.00469 * 12 11 10 22 22 C 1.52998 * 117.49937 * 183.19131 * 21 12 11 23 23 C 1.52996 * 117.50361 * 114.53092 * 21 12 11 24 24 H 1.08995 * 109.46602 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46715 * 299.99778 * 1 2 3 26 26 H 1.08999 * 109.46690 * 59.99652 * 1 2 3 27 27 H 1.07997 * 119.97155 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.94981 * 179.75017 * 5 4 3 29 29 H 1.07994 * 119.97293 * 179.97438 * 6 5 4 30 30 H 1.08997 * 109.47541 * 179.97438 * 9 8 7 31 31 H 1.09006 * 109.47528 * 300.00664 * 9 8 7 32 32 H 1.08999 * 109.47122 * 60.00086 * 9 8 7 33 33 H 1.08997 * 109.46601 * 329.99718 * 11 10 7 34 34 H 1.08996 * 109.47191 * 209.99707 * 11 10 7 35 35 H 0.96995 * 119.99672 * 175.02804 * 16 15 13 36 36 H 1.09001 * 115.55050 * 328.85758 * 21 12 11 37 37 H 1.08997 * 117.50301 * 359.97438 * 22 21 12 38 38 H 1.09010 * 117.49851 * 145.01692 * 22 21 12 39 39 H 1.08995 * 117.50160 * 214.97953 * 23 21 12 40 40 H 1.08999 * 117.49511 * 359.97368 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2908 2.3751 0.0058 5 6 1.9175 3.6065 0.0001 6 6 3.2972 3.6821 -0.0056 7 6 4.0568 2.5208 -0.0061 8 8 5.4137 2.5958 -0.0112 9 6 5.9912 3.9029 -0.0164 10 6 3.4305 1.2841 -0.0004 11 6 4.2530 0.0214 -0.0004 12 7 4.5251 -0.3842 1.3808 13 6 5.6459 0.0736 2.0206 14 1 5.5945 0.3621 3.0601 15 6 6.8483 0.1667 1.3332 16 7 7.0247 -0.5141 0.2206 17 14 8.2159 1.2582 1.9871 18 1 9.0841 0.4711 2.8992 19 1 9.0256 1.7706 0.8525 20 1 7.6253 2.4007 2.7294 21 6 3.5982 -1.2795 2.0774 22 6 3.8980 -1.6065 3.5417 23 6 4.1116 -2.6689 2.4606 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2123 2.3185 0.0108 28 1 1.3280 4.5115 0.0006 29 1 3.7847 4.6458 -0.0104 30 1 7.0780 3.8200 -0.0197 31 1 5.6648 4.4409 -0.9064 32 1 5.6713 4.4450 0.8735 33 1 5.1949 0.2014 -0.5185 34 1 3.7036 -0.7702 -0.5099 35 1 7.8357 -0.3941 -0.2979 36 1 2.5517 -1.1926 1.7853 37 1 4.7851 -1.1558 3.9866 38 1 3.0487 -1.7351 4.2128 39 1 3.4028 -3.4960 2.4209 40 1 5.1389 -2.9170 2.1940 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602448298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:08 Heat of formation + Delta-G solvation = -7.752730 kcal Electronic energy + Delta-G solvation = -22895.069685 eV Core-core repulsion = 19677.115160 eV Total energy + Delta-G solvation = -3217.954525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.32180 -39.72280 -38.53937 -37.11315 -35.32002 -33.31900 -31.18761 -30.27793 -28.53411 -27.79136 -27.02824 -25.25776 -22.99873 -22.53474 -22.35690 -21.36069 -19.31729 -18.12940 -17.61621 -17.12647 -16.99499 -16.81088 -16.32470 -16.23037 -16.20879 -15.54219 -15.51340 -14.46429 -14.34694 -14.00134 -13.61795 -13.46993 -13.27671 -13.01201 -12.83310 -12.62940 -12.51822 -12.25310 -12.22439 -12.18632 -11.99621 -11.61105 -11.46242 -11.45190 -11.17439 -10.87230 -10.35220 -9.04728 -8.88651 -8.36505 -7.65658 -5.35352 0.59943 0.66886 1.41859 1.43906 1.53823 2.26581 2.56966 2.93939 2.99479 3.29731 3.52126 3.76493 4.00497 4.22563 4.24125 4.26241 4.37983 4.40224 4.41274 4.50217 4.54516 4.56383 4.65141 4.66630 4.72646 4.80376 4.94194 4.99093 5.09598 5.20254 5.41523 5.43985 5.54397 5.58042 5.61951 5.76573 5.80063 5.95238 6.58426 6.65729 6.77701 7.29420 7.97217 8.52316 9.25422 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014186 B = 0.009845 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.294383 B = 2843.320958 C = 4334.679586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.331 6.331 3 C 0.153 3.847 4 C -0.249 4.249 5 C -0.051 4.051 6 C -0.256 4.256 7 C 0.158 3.842 8 O -0.314 6.314 9 C 0.020 3.980 10 C -0.181 4.181 11 C 0.212 3.788 12 N -0.554 5.554 13 C -0.251 4.251 14 H 0.041 0.959 15 C -0.002 4.002 16 N -0.909 5.909 17 Si 0.934 3.066 18 H -0.295 1.295 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.110 3.890 22 C -0.185 4.185 23 C -0.217 4.217 24 H 0.113 0.887 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.153 0.847 28 H 0.159 0.841 29 H 0.144 0.856 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.021 0.979 35 H 0.247 0.753 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.829 8.184 -1.371 15.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.245 6.245 3 C 0.107 3.893 4 C -0.268 4.268 5 C -0.069 4.069 6 C -0.274 4.274 7 C 0.111 3.889 8 O -0.226 6.226 9 C -0.075 4.075 10 C -0.185 4.185 11 C 0.086 3.914 12 N -0.270 5.270 13 C -0.381 4.381 14 H 0.059 0.941 15 C -0.200 4.200 16 N -0.553 5.553 17 Si 0.763 3.237 18 H -0.222 1.222 19 H -0.210 1.210 20 H -0.196 1.196 21 C 0.001 3.999 22 C -0.223 4.223 23 C -0.258 4.258 24 H 0.131 0.869 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.170 0.830 28 H 0.176 0.824 29 H 0.162 0.838 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.040 0.960 35 H 0.057 0.943 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.415 7.782 -1.471 14.727 hybrid contribution 1.094 0.589 0.270 1.272 sum -11.321 8.372 -1.201 14.131 Atomic orbital electron populations 1.23307 0.76727 1.05143 1.02187 1.86092 1.23137 1.26878 1.88382 1.18601 0.90569 0.85162 0.94946 1.21323 1.00765 0.91557 1.13109 1.20962 0.93216 0.97927 0.94796 1.21352 0.95612 0.96954 1.13518 1.18778 0.82863 0.93423 0.93793 1.86336 1.17633 1.30901 1.87729 1.23189 0.98917 0.83204 1.02208 1.19571 0.92135 0.96219 1.10535 1.19237 0.96847 0.89176 0.86128 1.43394 1.22336 1.50028 1.11262 1.18827 0.86490 1.36974 0.95831 0.94097 1.25492 0.97814 0.98575 0.98103 1.70141 1.26990 1.40057 1.18068 0.85843 0.80184 0.80204 0.77487 1.22246 1.21000 1.19595 1.21475 0.93625 0.90869 0.93906 1.23008 1.02758 1.04068 0.92438 1.23239 1.01005 0.94847 1.06702 0.86870 0.91819 0.91448 0.82967 0.82388 0.83823 0.89367 0.90658 0.92013 0.91086 0.96041 0.94336 0.87769 0.90930 0.87476 0.88272 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 16 2 O -0.33 -11.35 8.30 -92.38 -0.77 -12.12 16 3 C 0.15 5.67 6.66 22.49 0.15 5.82 16 4 C -0.25 -7.16 9.04 22.38 0.20 -6.96 16 5 C -0.05 -1.37 10.04 22.24 0.22 -1.15 16 6 C -0.26 -8.16 9.04 22.38 0.20 -7.96 16 7 C 0.16 6.56 6.66 22.49 0.15 6.71 16 8 O -0.31 -13.82 9.06 -92.37 -0.84 -14.66 16 9 C 0.02 0.63 9.81 113.37 1.11 1.75 16 10 C -0.18 -8.04 5.49 -19.67 -0.11 -8.15 16 11 C 0.21 10.98 5.02 85.63 0.43 11.41 16 12 N -0.55 -29.44 2.73 -682.37 -1.86 -31.30 16 13 C -0.25 -14.32 8.45 84.03 0.71 -13.61 16 14 H 0.04 2.41 6.77 -2.91 -0.02 2.39 16 15 C 0.00 -0.09 4.51 84.86 0.38 0.30 16 16 N -0.91 -54.76 11.51 21.65 0.25 -54.51 16 17 Si 0.93 45.96 29.60 68.60 2.03 47.99 16 18 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 19 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 20 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 21 C 0.11 5.08 6.56 44.99 0.30 5.37 16 22 C -0.18 -7.75 9.80 30.62 0.30 -7.45 16 23 C -0.22 -9.51 10.36 30.62 0.32 -9.19 16 24 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.06 1.18 7.65 -2.39 -0.02 1.17 16 26 H 0.07 1.19 7.67 -2.39 -0.02 1.17 16 27 H 0.15 3.24 6.29 -2.91 -0.02 3.22 16 28 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 29 H 0.14 3.74 6.29 -2.91 -0.02 3.72 16 30 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.07 1.93 7.66 -2.38 -0.02 1.91 16 32 H 0.06 1.78 7.66 -2.39 -0.02 1.76 16 33 H 0.07 4.17 5.00 -2.39 -0.01 4.16 16 34 H 0.02 1.12 7.45 -2.39 -0.02 1.10 16 35 H 0.25 14.48 8.32 -92.71 -0.77 13.70 16 36 H 0.10 4.50 6.87 -2.39 -0.02 4.48 16 37 H 0.07 3.39 6.48 -2.39 -0.02 3.37 16 38 H 0.11 3.68 8.14 -2.38 -0.02 3.66 16 39 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 40 H 0.05 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -70.60 326.63 5.33 -65.27 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 1.04 Total: 20.89 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 5.48 Total: -21.56 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -1.61 Total: -85.81 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -1.60 Total: -26.78 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -70.60 5.33 -65.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602448298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.519 kcal (2) G-P(sol) polarization free energy of solvation -70.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds