Wall clock time and date at job start Mon Mar 30 2020 02:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00335 * 2 1 4 4 C 1.53006 * 110.75125 * 55.47649 * 3 2 1 5 5 N 1.46496 * 109.46827 * 59.61541 * 4 3 2 6 6 C 1.39680 * 120.00022 * 175.59378 * 5 4 3 7 7 C 1.39340 * 119.95021 * 0.02562 * 6 5 4 8 8 C 1.38482 * 120.42283 * 179.97438 * 7 6 5 9 9 C 1.37683 * 120.32631 * 359.97336 * 8 7 6 10 10 C 1.40751 * 119.89493 * 0.02592 * 9 8 7 11 11 C 1.41406 * 120.20930 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99922 * 27.80495 * 11 10 9 13 13 C 1.39928 * 119.99980 * 207.80665 * 11 10 9 14 14 N 1.30836 * 119.99988 * 13.45414 * 13 11 10 15 15 Si 1.86799 * 120.00219 * 193.44738 * 13 11 10 16 16 H 1.48496 * 109.47019 * 90.00388 * 15 13 11 17 17 H 1.48501 * 109.47187 * 210.00451 * 15 13 11 18 18 H 1.48502 * 109.47151 * 330.00430 * 15 13 11 19 19 C 1.38280 * 119.95232 * 179.71863 * 6 5 4 20 20 C 1.55307 * 110.84686 * 292.00622 * 3 2 1 21 21 C 1.55493 * 100.69526 * 275.83835 * 20 3 2 22 22 O 1.43651 * 105.18098 * 323.57756 * 21 20 3 23 23 C 1.43237 * 109.96902 * 24.43519 * 22 21 20 24 24 H 1.08997 * 109.47128 * 297.39491 * 1 2 3 25 25 H 1.08999 * 109.46948 * 177.39244 * 1 2 3 26 26 H 1.08996 * 109.47098 * 57.39510 * 1 2 3 27 27 H 1.09000 * 109.47007 * 179.61180 * 4 3 2 28 28 H 1.09000 * 109.47210 * 299.61512 * 4 3 2 29 29 H 0.97003 * 120.00494 * 355.59036 * 5 4 3 30 30 H 1.07996 * 119.78810 * 359.97438 * 7 6 5 31 31 H 1.07997 * 119.83384 * 179.97438 * 8 7 6 32 32 H 1.07998 * 120.05517 * 180.02562 * 9 8 7 33 33 H 0.96994 * 120.00138 * 180.02562 * 14 13 11 34 34 H 1.07999 * 120.16141 * 0.02851 * 19 6 5 35 35 H 1.09008 * 111.12439 * 33.86231 * 20 3 2 36 36 H 1.08994 * 111.12644 * 158.01849 * 20 3 2 37 37 H 1.09000 * 110.28442 * 204.65287 * 21 20 3 38 38 H 1.08994 * 110.29587 * 82.51361 * 21 20 3 39 39 H 1.08996 * 109.83016 * 238.77519 * 23 22 21 40 40 H 1.09006 * 109.90355 * 117.84420 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4900 2.1305 1.1788 5 7 1.8269 1.4547 2.4342 6 6 1.5351 2.0652 3.6562 7 6 0.9231 3.3168 3.6799 8 6 0.6289 3.9308 4.8858 9 6 0.9377 3.3103 6.0754 10 6 1.5561 2.0459 6.0673 11 6 1.8757 1.4024 7.2851 12 1 1.2942 1.6057 8.1722 13 6 2.9455 0.5022 7.3410 14 7 3.8076 0.4488 6.3582 15 14 3.1430 -0.6233 8.8188 16 1 2.4115 -1.8925 8.5756 17 1 4.5838 -0.9149 9.0298 18 1 2.5909 0.0429 10.0256 19 6 1.8482 1.4239 4.8405 20 6 1.7383 2.0315 -1.3457 21 6 2.8971 1.4689 -2.2165 22 8 4.0153 1.3489 -1.3227 23 6 3.5515 1.2206 0.0264 24 1 -0.3633 0.4728 0.9124 25 1 -0.3633 -1.0266 -0.0468 26 1 -0.3633 0.5537 -0.8657 27 1 1.9512 3.1180 1.1627 28 1 0.4077 2.2335 1.1007 29 1 2.2525 0.5833 2.4169 30 1 0.6766 3.8112 2.7519 31 1 0.1548 4.9012 4.8930 32 1 0.7060 3.7930 7.0133 33 1 4.5489 -0.1755 6.3967 34 1 2.3184 0.4518 4.8234 35 1 0.7658 1.7539 -1.7523 36 1 1.8204 3.1124 -1.2324 37 1 3.1320 2.1606 -3.0255 38 1 2.6279 0.4924 -2.6190 39 1 3.9560 2.0294 0.6349 40 1 3.8620 0.2592 0.4357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602679932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:36 Heat of formation + Delta-G solvation = -66.203456 kcal Electronic energy + Delta-G solvation = -21715.073362 eV Core-core repulsion = 18494.584223 eV Total energy + Delta-G solvation = -3220.489139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.29730 -37.79204 -37.06661 -34.75486 -33.24195 -31.61048 -29.81244 -29.42320 -27.95222 -26.55906 -25.26126 -24.70998 -22.54081 -21.21977 -20.26991 -19.78997 -17.47780 -17.17642 -16.62653 -15.70919 -15.38953 -15.29743 -14.93905 -14.76007 -14.49866 -14.21642 -14.00215 -13.15756 -13.04893 -12.85016 -12.68587 -12.25318 -12.13373 -11.94458 -11.64297 -11.54678 -11.31969 -11.14924 -11.04174 -10.66424 -10.58065 -10.35665 -9.75203 -9.62134 -9.56799 -9.44683 -9.25332 -8.79788 -7.27958 -6.68233 -6.18951 -4.31446 2.88461 3.12206 3.15595 3.21369 3.33304 3.46601 3.75290 4.00512 4.07590 4.37942 4.66167 4.73609 4.76428 5.00981 5.09413 5.14763 5.39961 5.49317 5.52407 5.57087 5.65248 5.71814 5.75407 5.85067 5.88055 5.94908 6.24694 6.53715 6.82987 6.85706 7.04946 7.10900 7.16316 7.37551 7.43592 7.78703 7.94642 8.08741 8.18437 8.49745 8.67868 8.84156 9.02299 9.11107 10.31223 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021532 B = 0.004454 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.085438 B = 6285.678933 C = 6867.209667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.366 6.366 3 C 0.073 3.927 4 C 0.123 3.877 5 N -0.755 5.755 6 C 0.214 3.786 7 C -0.298 4.298 8 C -0.068 4.068 9 C -0.254 4.254 10 C 0.140 3.860 11 C -0.466 4.466 12 H 0.076 0.924 13 C 0.077 3.923 14 N -0.798 5.798 15 Si 0.906 3.094 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.263 1.263 19 C -0.223 4.223 20 C -0.179 4.179 21 C 0.058 3.942 22 O -0.382 6.382 23 C 0.068 3.932 24 H 0.054 0.946 25 H 0.086 0.914 26 H 0.040 0.960 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.394 0.606 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.277 0.723 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.442 -0.077 -13.895 14.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.285 6.285 3 C 0.033 3.967 4 C -0.003 4.003 5 N -0.390 5.390 6 C 0.115 3.885 7 C -0.321 4.321 8 C -0.087 4.087 9 C -0.274 4.274 10 C 0.136 3.864 11 C -0.497 4.497 12 H 0.094 0.906 13 C -0.140 4.140 14 N -0.424 5.424 15 Si 0.731 3.269 16 H -0.195 1.195 17 H -0.204 1.204 18 H -0.187 1.187 19 C -0.247 4.247 20 C -0.217 4.217 21 C -0.018 4.018 22 O -0.302 6.302 23 C -0.008 4.008 24 H 0.072 0.928 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.228 0.772 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.135 0.865 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.109 0.891 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.962 -0.217 -14.136 14.444 hybrid contribution -0.172 -0.571 0.680 0.905 sum -3.134 -0.788 -13.455 13.838 Atomic orbital electron populations 1.22832 0.80917 1.02771 1.00603 1.87972 1.20068 1.25671 1.94761 1.23292 0.94676 0.84451 0.94291 1.21461 0.99370 0.95667 0.83784 1.44272 1.70673 1.22400 1.01640 1.17641 0.94251 0.91909 0.84669 1.19871 1.17722 0.98256 0.96255 1.20280 0.98401 0.97149 0.92829 1.20905 1.13261 0.97644 0.95617 1.17333 0.87156 0.89284 0.92585 1.19552 1.12575 1.21191 0.96358 0.90635 1.25853 0.94725 0.96201 0.97238 1.69837 1.10139 1.30937 1.31470 0.86351 0.77910 0.80677 0.81943 1.19455 1.20429 1.18749 1.20742 1.12351 1.01868 0.89769 1.23873 1.00525 1.01612 0.95691 1.23380 0.85296 1.00266 0.92898 1.88404 1.30471 1.94958 1.16323 1.23140 0.90110 1.03404 0.84161 0.92760 0.89569 0.94141 0.91801 0.92852 0.77169 0.89838 0.89645 0.89348 0.91208 0.86512 0.89261 0.89055 0.89730 0.91948 0.89095 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.29 101.05 1.04 1.32 16 2 O -0.37 -5.01 10.15 -35.23 -0.36 -5.36 16 3 C 0.07 0.95 0.49 -88.67 -0.04 0.90 16 4 C 0.12 1.84 3.27 -4.04 -0.01 1.83 16 5 N -0.76 -14.11 5.45 -58.68 -0.32 -14.43 16 6 C 0.21 4.90 6.64 -83.86 -0.56 4.35 16 7 C -0.30 -6.66 9.30 -39.08 -0.36 -7.03 16 8 C -0.07 -1.55 10.01 -39.69 -0.40 -1.95 16 9 C -0.25 -6.39 9.79 -38.84 -0.38 -6.77 16 10 C 0.14 3.79 5.55 -106.85 -0.59 3.20 16 11 C -0.47 -12.63 9.06 -37.74 -0.34 -12.98 16 12 H 0.08 1.97 7.88 -52.49 -0.41 1.56 16 13 C 0.08 1.96 5.20 -17.34 -0.09 1.87 16 14 N -0.80 -20.99 10.94 55.55 0.61 -20.38 16 15 Si 0.91 19.10 29.58 -169.99 -5.03 14.07 16 16 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 17 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 19 C -0.22 -5.82 8.50 -38.67 -0.33 -6.15 16 20 C -0.18 -1.82 6.22 -24.18 -0.15 -1.97 16 21 C 0.06 0.62 7.79 38.48 0.30 0.92 16 22 O -0.38 -5.34 11.36 -35.23 -0.40 -5.74 16 23 C 0.07 0.95 6.80 37.88 0.26 1.21 16 24 H 0.05 0.69 6.62 -51.93 -0.34 0.35 16 25 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.37 6.43 -51.93 -0.33 0.04 16 27 H 0.06 0.97 7.69 -51.93 -0.40 0.57 16 28 H 0.05 0.78 6.66 -51.93 -0.35 0.44 16 29 H 0.39 7.37 8.17 -40.82 -0.33 7.04 16 30 H 0.08 1.66 6.69 -52.49 -0.35 1.31 16 31 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 33 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 34 H 0.12 3.16 6.27 -52.49 -0.33 2.83 16 35 H 0.09 0.78 6.38 -51.92 -0.33 0.44 16 36 H 0.09 0.85 8.04 -51.93 -0.42 0.43 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.31 7.80 -51.93 -0.41 0.90 16 40 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 LS Contribution 323.23 15.07 4.87 4.87 Total: -1.00 -28.95 323.23 -7.96 -36.90 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -5.67 Total: 11.31 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -1.66 Total: -21.24 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.29 Total: -34.81 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -0.76 Total: -11.10 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.95 -7.96 -36.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602679932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.299 kcal (2) G-P(sol) polarization free energy of solvation -28.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds