Wall clock time and date at job start Mon Mar 30 2020 02:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00335 * 2 1 4 4 C 1.53006 * 110.75125 * 55.47649 * 3 2 1 5 5 N 1.46496 * 109.46827 * 59.61541 * 4 3 2 6 6 C 1.39680 * 120.00022 * 175.59378 * 5 4 3 7 7 C 1.39340 * 119.95021 * 0.02562 * 6 5 4 8 8 C 1.38482 * 120.42283 * 179.97438 * 7 6 5 9 9 C 1.37683 * 120.32631 * 359.97336 * 8 7 6 10 10 C 1.40751 * 119.89493 * 0.02592 * 9 8 7 11 11 C 1.41406 * 120.20930 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99922 * 27.80495 * 11 10 9 13 13 C 1.39928 * 119.99980 * 207.80665 * 11 10 9 14 14 N 1.30836 * 119.99988 * 13.45414 * 13 11 10 15 15 Si 1.86799 * 120.00219 * 193.44738 * 13 11 10 16 16 H 1.48496 * 109.47019 * 90.00388 * 15 13 11 17 17 H 1.48501 * 109.47187 * 210.00451 * 15 13 11 18 18 H 1.48502 * 109.47151 * 330.00430 * 15 13 11 19 19 C 1.38280 * 119.95232 * 179.71863 * 6 5 4 20 20 C 1.55307 * 110.84686 * 292.00622 * 3 2 1 21 21 C 1.55493 * 100.69526 * 275.83835 * 20 3 2 22 22 O 1.43651 * 105.18098 * 323.57756 * 21 20 3 23 23 C 1.43237 * 109.96902 * 24.43519 * 22 21 20 24 24 H 1.08997 * 109.47128 * 297.39491 * 1 2 3 25 25 H 1.08999 * 109.46948 * 177.39244 * 1 2 3 26 26 H 1.08996 * 109.47098 * 57.39510 * 1 2 3 27 27 H 1.09000 * 109.47007 * 179.61180 * 4 3 2 28 28 H 1.09000 * 109.47210 * 299.61512 * 4 3 2 29 29 H 0.97003 * 120.00494 * 355.59036 * 5 4 3 30 30 H 1.07996 * 119.78810 * 359.97438 * 7 6 5 31 31 H 1.07997 * 119.83384 * 179.97438 * 8 7 6 32 32 H 1.07998 * 120.05517 * 180.02562 * 9 8 7 33 33 H 0.96994 * 120.00138 * 180.02562 * 14 13 11 34 34 H 1.07999 * 120.16141 * 0.02851 * 19 6 5 35 35 H 1.09008 * 111.12439 * 33.86231 * 20 3 2 36 36 H 1.08994 * 111.12644 * 158.01849 * 20 3 2 37 37 H 1.09000 * 110.28442 * 204.65287 * 21 20 3 38 38 H 1.08994 * 110.29587 * 82.51361 * 21 20 3 39 39 H 1.08996 * 109.83016 * 238.77519 * 23 22 21 40 40 H 1.09006 * 109.90355 * 117.84420 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4900 2.1305 1.1788 5 7 1.8269 1.4547 2.4342 6 6 1.5351 2.0652 3.6562 7 6 0.9231 3.3168 3.6799 8 6 0.6289 3.9308 4.8858 9 6 0.9377 3.3103 6.0754 10 6 1.5561 2.0459 6.0673 11 6 1.8757 1.4024 7.2851 12 1 1.2942 1.6057 8.1722 13 6 2.9455 0.5022 7.3410 14 7 3.8076 0.4488 6.3582 15 14 3.1430 -0.6233 8.8188 16 1 2.4115 -1.8925 8.5756 17 1 4.5838 -0.9149 9.0298 18 1 2.5909 0.0429 10.0256 19 6 1.8482 1.4239 4.8405 20 6 1.7383 2.0315 -1.3457 21 6 2.8971 1.4689 -2.2165 22 8 4.0153 1.3489 -1.3227 23 6 3.5515 1.2206 0.0264 24 1 -0.3633 0.4728 0.9124 25 1 -0.3633 -1.0266 -0.0468 26 1 -0.3633 0.5537 -0.8657 27 1 1.9512 3.1180 1.1627 28 1 0.4077 2.2335 1.1007 29 1 2.2525 0.5833 2.4169 30 1 0.6766 3.8112 2.7519 31 1 0.1548 4.9012 4.8930 32 1 0.7060 3.7930 7.0133 33 1 4.5489 -0.1755 6.3967 34 1 2.3184 0.4518 4.8234 35 1 0.7658 1.7539 -1.7523 36 1 1.8204 3.1124 -1.2324 37 1 3.1320 2.1606 -3.0255 38 1 2.6279 0.4924 -2.6190 39 1 3.9560 2.0294 0.6349 40 1 3.8620 0.2592 0.4357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602679932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:36 Heat of formation + Delta-G solvation = -84.811834 kcal Electronic energy + Delta-G solvation = -21715.880282 eV Core-core repulsion = 18494.584223 eV Total energy + Delta-G solvation = -3221.296059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.33263 -39.51669 -38.15527 -36.36999 -35.04384 -32.74029 -31.34418 -30.92269 -29.35752 -27.62207 -27.12362 -26.06972 -23.47989 -22.97863 -21.74550 -21.25036 -19.07482 -18.47059 -17.93684 -17.06476 -16.69357 -16.48130 -16.29931 -16.24518 -15.85733 -15.60298 -15.20458 -14.57812 -14.48353 -14.34497 -13.99857 -13.95252 -13.39903 -13.12442 -12.96657 -12.86923 -12.76549 -12.55816 -12.44730 -12.17804 -12.12574 -11.65338 -11.53897 -11.29289 -11.10261 -10.67320 -10.61907 -10.50837 -9.21808 -8.58882 -7.92974 -6.33556 1.08662 1.32466 1.38442 1.51179 1.57538 2.23589 2.40954 2.80358 2.81624 2.87884 3.33418 3.55731 3.73126 3.86102 4.12757 4.24728 4.35117 4.42535 4.47680 4.50999 4.53854 4.65547 4.67528 4.76962 4.80182 4.84024 4.93406 4.97899 4.99531 5.20946 5.28636 5.43538 5.58557 5.86706 5.93738 6.09011 6.12889 6.21511 6.24719 6.58663 6.93561 7.00440 7.06266 7.21625 8.41710 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021532 B = 0.004454 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.085438 B = 6285.678933 C = 6867.209667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.384 6.384 3 C 0.078 3.922 4 C 0.122 3.878 5 N -0.749 5.749 6 C 0.220 3.780 7 C -0.297 4.297 8 C -0.063 4.063 9 C -0.281 4.281 10 C 0.109 3.891 11 C -0.506 4.506 12 H 0.071 0.929 13 C 0.035 3.965 14 N -0.829 5.829 15 Si 0.980 3.020 16 H -0.264 1.264 17 H -0.269 1.269 18 H -0.259 1.259 19 C -0.252 4.252 20 C -0.168 4.168 21 C 0.051 3.949 22 O -0.401 6.401 23 C 0.068 3.932 24 H 0.037 0.963 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.392 0.608 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.283 0.717 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.313 0.452 -15.653 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.304 6.304 3 C 0.037 3.963 4 C -0.003 4.003 5 N -0.381 5.381 6 C 0.119 3.881 7 C -0.320 4.320 8 C -0.082 4.082 9 C -0.302 4.302 10 C 0.106 3.894 11 C -0.536 4.536 12 H 0.089 0.911 13 C -0.178 4.178 14 N -0.456 5.456 15 Si 0.801 3.199 16 H -0.188 1.188 17 H -0.194 1.194 18 H -0.183 1.183 19 C -0.277 4.277 20 C -0.206 4.206 21 C -0.025 4.025 22 O -0.321 6.321 23 C -0.009 4.009 24 H 0.055 0.945 25 H 0.115 0.885 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.225 0.775 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.843 0.322 -15.942 16.402 hybrid contribution 0.066 -0.684 1.058 1.262 sum -3.777 -0.363 -14.884 15.360 Atomic orbital electron populations 1.22963 0.79662 1.03875 1.00889 1.87960 1.21456 1.26079 1.94885 1.23207 0.93695 0.84382 0.94973 1.21676 1.00155 0.95866 0.82574 1.44351 1.69710 1.22244 1.01832 1.17739 0.92994 0.92101 0.85298 1.20235 1.16550 0.97747 0.97452 1.20663 0.97214 0.98239 0.92092 1.21065 1.14581 0.97620 0.96898 1.17712 0.88076 0.90406 0.93210 1.19808 1.13903 1.23335 0.96563 0.91068 1.26682 0.93792 0.97057 1.00297 1.69910 1.10632 1.31668 1.33363 0.85244 0.78242 0.78349 0.78071 1.18836 1.19366 1.18303 1.20654 1.14276 1.01736 0.91006 1.23881 1.01359 1.01987 0.93334 1.23631 0.84617 1.01249 0.92966 1.88387 1.32224 1.95015 1.16448 1.23035 0.91186 1.02225 0.84456 0.94452 0.88500 0.91478 0.91326 0.91643 0.77455 0.86643 0.86191 0.89183 0.90641 0.88614 0.87144 0.87724 0.87293 0.91676 0.89996 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.29 113.37 1.17 1.61 16 2 O -0.38 -9.91 10.15 -148.98 -1.51 -11.42 16 3 C 0.08 1.86 0.49 -9.53 0.00 1.85 16 4 C 0.12 3.39 3.27 86.38 0.28 3.67 16 5 N -0.75 -27.67 5.45 -339.58 -1.85 -29.52 16 6 C 0.22 10.06 6.64 38.17 0.25 10.32 16 7 C -0.30 -12.73 9.30 22.59 0.21 -12.52 16 8 C -0.06 -2.82 10.01 22.20 0.22 -2.60 16 9 C -0.28 -14.37 9.79 22.75 0.22 -14.15 16 10 C 0.11 6.13 5.55 -21.31 -0.12 6.01 16 11 C -0.51 -28.55 9.06 23.46 0.21 -28.34 16 12 H 0.07 3.90 7.88 -2.91 -0.02 3.87 16 13 C 0.04 1.87 5.20 85.25 0.44 2.31 16 14 N -0.83 -45.16 10.94 21.82 0.24 -44.92 16 15 Si 0.98 39.96 29.58 68.60 2.03 41.99 16 16 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 17 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 18 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 19 C -0.25 -13.61 8.50 22.86 0.19 -13.41 16 20 C -0.17 -2.82 6.22 32.24 0.20 -2.62 16 21 C 0.05 0.94 7.79 72.84 0.57 1.51 16 22 O -0.40 -10.68 11.36 -148.98 -1.69 -12.37 16 23 C 0.07 1.85 6.80 72.45 0.49 2.35 16 24 H 0.04 0.88 6.62 -2.39 -0.02 0.86 16 25 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.07 0.99 6.43 -2.39 -0.02 0.98 16 27 H 0.07 1.88 7.69 -2.39 -0.02 1.86 16 28 H 0.07 1.71 6.66 -2.39 -0.02 1.69 16 29 H 0.39 14.91 8.17 -92.71 -0.76 14.16 16 30 H 0.12 4.17 6.69 -2.91 -0.02 4.15 16 31 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 32 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 33 H 0.28 14.05 8.30 -92.71 -0.77 13.28 16 34 H 0.10 5.47 6.27 -2.91 -0.02 5.45 16 35 H 0.11 1.41 6.38 -2.38 -0.02 1.40 16 36 H 0.10 1.52 8.04 -2.39 -0.02 1.50 16 37 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 2.35 7.80 -2.39 -0.02 2.33 16 40 H 0.07 1.98 8.07 -2.38 -0.02 1.96 16 Total: -1.00 -64.49 323.23 1.85 -62.64 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: 0.29 Total: 37.62 kcal Atomic # 6 Polarization: -48.36 SS G_CDS: 4.35 Total: -44.02 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -1.61 Total: -74.44 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -3.20 Total: -23.79 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -64.49 1.85 -62.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602679932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.175 kcal (2) G-P(sol) polarization free energy of solvation -64.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds