Wall clock time and date at job start Mon Mar 30 2020 01:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 116.99860 * 2 1 4 4 C 1.38773 * 120.02611 * 0.24619 * 3 2 1 5 5 C 1.38179 * 120.05040 * 180.30388 * 4 3 2 6 6 C 1.38174 * 120.11171 * 359.72501 * 5 4 3 7 7 C 1.38775 * 120.05358 * 359.97438 * 6 5 4 8 8 O 1.35900 * 120.02639 * 179.97438 * 7 6 5 9 9 C 1.42904 * 116.99999 * 0.02898 * 8 7 6 10 10 C 1.38629 * 119.94261 * 0.02562 * 7 6 5 11 11 C 1.50709 * 120.05306 * 179.97438 * 10 7 6 12 12 N 1.46904 * 109.46729 * 89.99861 * 11 10 7 13 13 C 1.47959 * 110.99462 * 190.00212 * 12 11 10 14 14 C 1.53940 * 86.17699 * 222.41626 * 13 12 11 15 15 C 1.50706 * 113.72960 * 138.08084 * 14 13 12 16 16 H 1.07995 * 120.00167 * 1.62264 * 15 14 13 17 17 C 1.37879 * 119.99394 * 181.89962 * 15 14 13 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 89.99430 * 19 17 15 21 21 H 1.48494 * 109.47031 * 209.99977 * 19 17 15 22 22 H 1.48504 * 109.46680 * 329.99678 * 19 17 15 23 23 C 1.48181 * 111.07114 * 90.56973 * 12 11 10 24 24 H 1.09002 * 109.47505 * 300.00672 * 1 2 3 25 25 H 1.08998 * 109.46998 * 60.00598 * 1 2 3 26 26 H 1.09003 * 109.47177 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.97586 * 0.02562 * 4 3 2 28 28 H 1.08007 * 119.94522 * 179.70067 * 5 4 3 29 29 H 1.08005 * 119.97459 * 180.02562 * 6 5 4 30 30 H 1.08996 * 109.47034 * 180.02562 * 9 8 7 31 31 H 1.09003 * 109.46614 * 299.99371 * 9 8 7 32 32 H 1.08998 * 109.46959 * 59.99652 * 9 8 7 33 33 H 1.09001 * 109.46726 * 330.00191 * 11 10 7 34 34 H 1.09000 * 109.47108 * 209.99743 * 11 10 7 35 35 H 1.08999 * 113.75755 * 108.10617 * 13 12 11 36 36 H 1.08998 * 113.86166 * 336.74626 * 13 12 11 37 37 H 1.09004 * 113.73426 * 269.25544 * 14 13 12 38 38 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 39 39 H 1.09002 * 113.76007 * 23.23287 * 23 12 11 40 40 H 1.09000 * 113.82508 * 251.80992 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2906 2.3751 0.0052 5 6 1.9173 3.6065 -0.0012 6 6 3.2970 3.6822 -0.0069 7 6 4.0567 2.5209 -0.0058 8 8 5.4136 2.5959 -0.0120 9 6 5.9911 3.9031 -0.0188 10 6 3.4303 1.2842 0.0005 11 6 4.2529 0.0214 0.0012 12 7 4.5257 -0.3845 1.3864 13 6 5.5234 -1.4761 1.4323 14 6 4.6238 -2.1141 2.5062 15 6 4.4595 -3.6043 2.3525 16 1 4.9738 -4.1253 1.5586 17 6 3.6480 -4.3016 3.2222 18 7 3.5042 -5.6019 3.0878 19 14 2.7517 -3.3993 4.5904 20 1 1.4228 -2.9523 4.1010 21 1 2.5719 -4.3103 5.7492 22 1 3.5482 -2.2177 5.0086 23 6 3.4732 -1.2972 1.8912 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.2121 2.3186 0.0096 28 1 1.3278 4.5115 -0.0020 29 1 3.7846 4.6459 -0.0115 30 1 7.0779 3.8201 -0.0238 31 1 5.6640 4.4400 -0.9093 32 1 5.6717 4.4460 0.8707 33 1 5.1949 0.2013 -0.5170 34 1 3.7034 -0.7704 -0.5080 35 1 6.4989 -1.1640 1.8054 36 1 5.5859 -2.0552 0.5110 37 1 4.8775 -1.8174 3.5239 38 1 2.9330 -6.0925 3.6994 39 1 2.9332 -1.8230 1.1038 40 1 2.8135 -0.8426 2.6303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602705535.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:41 Heat of formation + Delta-G solvation = -7.120749 kcal Electronic energy + Delta-G solvation = -22041.140019 eV Core-core repulsion = 18823.212899 eV Total energy + Delta-G solvation = -3217.927120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.54527 -38.90183 -38.51539 -36.28941 -32.98626 -31.98276 -29.45993 -28.82422 -27.78959 -26.74335 -25.49938 -24.98171 -22.62434 -21.68436 -20.74283 -18.46921 -18.41465 -16.96144 -16.68476 -16.24157 -15.93940 -15.67339 -15.42862 -14.83122 -14.72978 -14.38941 -13.83377 -13.40565 -13.22481 -12.87327 -12.59221 -12.40687 -12.37660 -12.02176 -11.58177 -11.50006 -11.47105 -11.33579 -10.92643 -10.68836 -10.62248 -10.26491 -9.92966 -9.61631 -9.44529 -9.05355 -8.50297 -8.12059 -8.05926 -7.81410 -6.02272 -4.01041 1.42910 1.51437 3.01306 3.35427 3.42124 3.49025 3.75466 3.78679 4.49382 4.72331 4.94624 4.98061 5.00375 5.08099 5.11216 5.16091 5.21133 5.27070 5.32475 5.40686 5.49306 5.57300 5.74901 5.86643 6.07120 6.19607 6.27356 6.32627 6.40905 6.47999 6.57003 6.59794 6.66888 6.69563 6.87916 7.25920 7.42406 7.52449 7.54208 7.80923 8.05497 8.58425 9.01084 9.61302 11.10582 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019431 B = 0.005695 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.686177 B = 4915.837618 C = 5774.586595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.301 6.301 3 C 0.171 3.829 4 C -0.248 4.248 5 C -0.050 4.050 6 C -0.249 4.249 7 C 0.177 3.823 8 O -0.302 6.302 9 C 0.029 3.971 10 C -0.129 4.129 11 C 0.077 3.923 12 N -0.481 5.481 13 C 0.015 3.985 14 C -0.011 4.011 15 C -0.506 4.506 16 H 0.074 0.926 17 C 0.073 3.927 18 N -0.903 5.903 19 Si 0.875 3.125 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.262 1.262 23 C 0.005 3.995 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.101 0.899 27 H 0.126 0.874 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.263 0.737 39 H 0.070 0.930 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.368 19.733 -7.795 21.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.213 6.213 3 C 0.125 3.875 4 C -0.267 4.267 5 C -0.068 4.068 6 C -0.268 4.268 7 C 0.130 3.870 8 O -0.215 6.215 9 C -0.066 4.066 10 C -0.131 4.131 11 C -0.052 4.052 12 N -0.203 5.203 13 C -0.114 4.114 14 C -0.030 4.030 15 C -0.544 4.544 16 H 0.092 0.908 17 C -0.128 4.128 18 N -0.541 5.541 19 Si 0.703 3.297 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.186 1.186 23 C -0.124 4.124 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.120 0.880 27 H 0.144 0.856 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.091 19.834 -7.404 21.395 hybrid contribution -1.178 0.237 0.218 1.221 sum -4.269 20.070 -7.186 21.741 Atomic orbital electron populations 1.23070 0.78514 1.04176 1.00921 1.86190 1.21101 1.26181 1.87850 1.18508 0.91050 0.84422 0.93544 1.21069 0.99866 0.92205 1.13515 1.20574 0.93666 0.96840 0.95736 1.21045 0.94817 0.97148 1.13821 1.18379 0.82391 0.92597 0.93604 1.86142 1.17214 1.30073 1.88040 1.23035 0.99143 0.83422 1.01020 1.18326 0.90390 0.94042 1.10294 1.21191 0.97882 0.92898 0.93201 1.68502 1.07142 1.28514 1.16178 1.23818 0.96275 0.91393 0.99867 1.20913 0.91589 0.95530 0.94987 1.21002 1.28282 0.89881 1.15222 0.90836 1.24971 0.96135 0.94532 0.97174 1.69920 1.39059 1.06870 1.38259 0.86849 0.80698 0.80121 0.82069 1.20241 1.21632 1.18607 1.24342 0.95586 0.93098 0.99364 0.92722 0.92897 0.88022 0.85609 0.85939 0.85677 0.88347 0.92973 0.92730 0.90780 0.92883 0.91365 0.92165 0.92664 0.92762 0.91154 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.30 -4.93 8.49 -19.43 -0.16 -5.09 16 3 C 0.17 2.76 6.66 -39.24 -0.26 2.50 16 4 C -0.25 -3.27 9.04 -39.41 -0.36 -3.62 16 5 C -0.05 -0.59 10.04 -39.63 -0.40 -0.99 16 6 C -0.25 -3.15 9.04 -39.41 -0.36 -3.51 16 7 C 0.18 2.72 6.66 -39.24 -0.26 2.45 16 8 O -0.30 -4.43 9.54 -19.42 -0.19 -4.62 16 9 C 0.03 0.28 9.81 101.05 0.99 1.27 16 10 C -0.13 -2.22 5.47 -104.33 -0.57 -2.79 16 11 C 0.08 1.44 4.49 -4.97 -0.02 1.42 16 12 N -0.48 -10.19 6.14 -239.59 -1.47 -11.66 16 13 C 0.01 0.32 7.50 -2.76 -0.02 0.30 16 14 C -0.01 -0.27 2.90 -90.84 -0.26 -0.53 16 15 C -0.51 -14.47 9.33 -34.44 -0.32 -14.80 16 16 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 17 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 18 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 19 Si 0.88 22.13 26.96 -169.99 -4.58 17.55 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.26 -6.46 6.29 56.52 0.36 -6.10 16 23 C 0.01 0.12 6.03 -2.64 -0.02 0.10 16 24 H 0.05 0.58 7.65 -51.93 -0.40 0.19 16 25 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 26 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.13 1.35 6.29 -52.49 -0.33 1.02 16 28 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 29 H 0.13 1.24 6.29 -52.48 -0.33 0.91 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 32 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 33 H 0.07 1.34 7.47 -51.93 -0.39 0.95 16 34 H 0.05 1.04 6.77 -51.93 -0.35 0.69 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.06 1.30 7.88 -51.93 -0.41 0.89 16 37 H 0.06 1.41 6.70 -51.93 -0.35 1.06 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 39 H 0.07 1.68 7.06 -51.93 -0.37 1.31 16 40 H 0.05 1.27 7.96 -51.93 -0.41 0.85 16 LS Contribution 323.73 15.07 4.88 4.88 Total: -1.00 -32.97 323.73 -7.53 -40.50 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.82 Total: 0.36 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -0.96 Total: -14.82 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.70 Total: -38.75 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.35 Total: -9.71 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.58 Total: 17.55 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.97 -7.53 -40.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602705535.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.379 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds