Wall clock time and date at job start Mon Mar 30 2020 01:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 116.99860 * 2 1 4 4 C 1.38773 * 120.02611 * 0.24619 * 3 2 1 5 5 C 1.38179 * 120.05040 * 180.30388 * 4 3 2 6 6 C 1.38174 * 120.11171 * 359.72501 * 5 4 3 7 7 C 1.38775 * 120.05358 * 359.97438 * 6 5 4 8 8 O 1.35900 * 120.02639 * 179.97438 * 7 6 5 9 9 C 1.42904 * 116.99999 * 0.02898 * 8 7 6 10 10 C 1.38629 * 119.94261 * 0.02562 * 7 6 5 11 11 C 1.50709 * 120.05306 * 179.97438 * 10 7 6 12 12 N 1.46904 * 109.46729 * 89.99861 * 11 10 7 13 13 C 1.47959 * 110.99462 * 190.00212 * 12 11 10 14 14 C 1.53940 * 86.17699 * 222.41626 * 13 12 11 15 15 C 1.50706 * 113.72960 * 138.08084 * 14 13 12 16 16 H 1.07995 * 120.00167 * 1.62264 * 15 14 13 17 17 C 1.37879 * 119.99394 * 181.89962 * 15 14 13 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 89.99430 * 19 17 15 21 21 H 1.48494 * 109.47031 * 209.99977 * 19 17 15 22 22 H 1.48504 * 109.46680 * 329.99678 * 19 17 15 23 23 C 1.48181 * 111.07114 * 90.56973 * 12 11 10 24 24 H 1.09002 * 109.47505 * 300.00672 * 1 2 3 25 25 H 1.08998 * 109.46998 * 60.00598 * 1 2 3 26 26 H 1.09003 * 109.47177 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.97586 * 0.02562 * 4 3 2 28 28 H 1.08007 * 119.94522 * 179.70067 * 5 4 3 29 29 H 1.08005 * 119.97459 * 180.02562 * 6 5 4 30 30 H 1.08996 * 109.47034 * 180.02562 * 9 8 7 31 31 H 1.09003 * 109.46614 * 299.99371 * 9 8 7 32 32 H 1.08998 * 109.46959 * 59.99652 * 9 8 7 33 33 H 1.09001 * 109.46726 * 330.00191 * 11 10 7 34 34 H 1.09000 * 109.47108 * 209.99743 * 11 10 7 35 35 H 1.08999 * 113.75755 * 108.10617 * 13 12 11 36 36 H 1.08998 * 113.86166 * 336.74626 * 13 12 11 37 37 H 1.09004 * 113.73426 * 269.25544 * 14 13 12 38 38 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 39 39 H 1.09002 * 113.76007 * 23.23287 * 23 12 11 40 40 H 1.09000 * 113.82508 * 251.80992 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2906 2.3751 0.0052 5 6 1.9173 3.6065 -0.0012 6 6 3.2970 3.6822 -0.0069 7 6 4.0567 2.5209 -0.0058 8 8 5.4136 2.5959 -0.0120 9 6 5.9911 3.9031 -0.0188 10 6 3.4303 1.2842 0.0005 11 6 4.2529 0.0214 0.0012 12 7 4.5257 -0.3845 1.3864 13 6 5.5234 -1.4761 1.4323 14 6 4.6238 -2.1141 2.5062 15 6 4.4595 -3.6043 2.3525 16 1 4.9738 -4.1253 1.5586 17 6 3.6480 -4.3016 3.2222 18 7 3.5042 -5.6019 3.0878 19 14 2.7517 -3.3993 4.5904 20 1 1.4228 -2.9523 4.1010 21 1 2.5719 -4.3103 5.7492 22 1 3.5482 -2.2177 5.0086 23 6 3.4732 -1.2972 1.8912 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.2121 2.3186 0.0096 28 1 1.3278 4.5115 -0.0020 29 1 3.7846 4.6459 -0.0115 30 1 7.0779 3.8201 -0.0238 31 1 5.6640 4.4400 -0.9093 32 1 5.6717 4.4460 0.8707 33 1 5.1949 0.2013 -0.5170 34 1 3.7034 -0.7704 -0.5080 35 1 6.4989 -1.1640 1.8054 36 1 5.5859 -2.0552 0.5110 37 1 4.8775 -1.8174 3.5239 38 1 2.9330 -6.0925 3.6994 39 1 2.9332 -1.8230 1.1038 40 1 2.8135 -0.8426 2.6303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602705535.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:41 Heat of formation + Delta-G solvation = -30.862353 kcal Electronic energy + Delta-G solvation = -22042.169532 eV Core-core repulsion = 18823.212899 eV Total energy + Delta-G solvation = -3218.956634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.64647 -40.26107 -39.89603 -37.29089 -34.88354 -33.60641 -30.46764 -30.43902 -28.64765 -27.83373 -27.06306 -26.81531 -24.21525 -22.67042 -22.09580 -20.38624 -19.45983 -19.04933 -17.77949 -17.23756 -17.09822 -16.90410 -16.48913 -16.35076 -16.15329 -15.67685 -15.38443 -15.17334 -14.62126 -14.37067 -13.94833 -13.55937 -13.46573 -13.43621 -13.10688 -12.95468 -12.81775 -12.37120 -12.33608 -12.08798 -11.93548 -11.70329 -11.59813 -11.47500 -11.34132 -11.13449 -10.70349 -9.62761 -9.25232 -9.04702 -8.29360 -6.33332 0.38867 0.49585 1.35039 1.36145 1.48752 2.07406 2.36160 2.72764 2.82334 3.03505 3.34328 3.76774 3.92480 4.08834 4.14366 4.16022 4.24932 4.35618 4.38495 4.43994 4.45645 4.49432 4.51654 4.62787 4.70357 4.71478 4.77250 4.80121 4.89440 4.99105 5.00448 5.26901 5.32333 5.47854 5.50155 5.56823 5.64190 5.66863 6.27656 6.31128 6.45493 6.53877 6.71060 7.32400 8.87025 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019431 B = 0.005695 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.686177 B = 4915.837618 C = 5774.586595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.154 3.846 4 C -0.250 4.250 5 C -0.040 4.040 6 C -0.248 4.248 7 C 0.167 3.833 8 O -0.330 6.330 9 C 0.020 3.980 10 C -0.170 4.170 11 C 0.086 3.914 12 N -0.475 5.475 13 C 0.022 3.978 14 C -0.020 4.020 15 C -0.512 4.512 16 H 0.035 0.965 17 C 0.020 3.980 18 N -0.948 5.948 19 Si 0.938 3.062 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.249 1.249 23 C 0.021 3.979 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.150 0.850 28 H 0.162 0.838 29 H 0.156 0.844 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.267 0.733 39 H 0.055 0.945 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.477 23.401 -7.355 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C 0.108 3.892 4 C -0.269 4.269 5 C -0.058 4.058 6 C -0.266 4.266 7 C 0.121 3.879 8 O -0.243 6.243 9 C -0.074 4.074 10 C -0.171 4.171 11 C -0.042 4.042 12 N -0.197 5.197 13 C -0.107 4.107 14 C -0.039 4.039 15 C -0.550 4.550 16 H 0.053 0.947 17 C -0.178 4.178 18 N -0.588 5.588 19 Si 0.762 3.238 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.173 1.173 23 C -0.108 4.108 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.122 0.878 27 H 0.168 0.832 28 H 0.180 0.820 29 H 0.173 0.827 30 H 0.131 0.869 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.190 23.525 -6.979 24.893 hybrid contribution -0.779 -0.869 -0.022 1.167 sum -4.969 22.656 -7.001 24.228 Atomic orbital electron populations 1.23309 0.76573 1.04973 1.02538 1.86135 1.23355 1.27163 1.88135 1.18757 0.91011 0.85256 0.94208 1.21389 1.01040 0.91676 1.12789 1.21086 0.93739 0.97753 0.93245 1.21409 0.95229 0.97417 1.12566 1.18561 0.82992 0.92797 0.93584 1.86096 1.17137 1.33084 1.88013 1.23347 0.99899 0.81776 1.02389 1.18367 0.91107 0.93835 1.13838 1.21028 0.98201 0.93740 0.91254 1.68495 1.05868 1.27200 1.18123 1.23737 0.96993 0.91371 0.98584 1.20905 0.93899 0.93252 0.95854 1.21181 1.27739 0.91985 1.14106 0.94718 1.25797 0.96981 0.95189 0.99793 1.70052 1.40339 1.08636 1.39740 0.85845 0.79818 0.79235 0.78915 1.19051 1.20904 1.17326 1.24022 0.95143 0.92891 0.98731 0.91665 0.90585 0.87797 0.83207 0.82032 0.82686 0.86874 0.91071 0.91714 0.90613 0.94692 0.89537 0.92823 0.92760 0.92439 0.92694 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 16 2 O -0.33 -10.93 8.49 -92.45 -0.78 -11.71 16 3 C 0.15 4.81 6.66 22.49 0.15 4.96 16 4 C -0.25 -5.87 9.04 22.38 0.20 -5.67 16 5 C -0.04 -0.79 10.04 22.24 0.22 -0.57 16 6 C -0.25 -5.39 9.04 22.38 0.20 -5.18 16 7 C 0.17 4.86 6.66 22.49 0.15 5.01 16 8 O -0.33 -9.20 9.54 -92.42 -0.88 -10.09 16 9 C 0.02 0.33 9.81 113.37 1.11 1.44 16 10 C -0.17 -5.79 5.47 -19.67 -0.11 -5.90 16 11 C 0.09 3.30 4.49 85.56 0.38 3.69 16 12 N -0.47 -20.15 6.14 -911.94 -5.60 -25.75 16 13 C 0.02 0.95 7.50 86.41 0.65 1.60 16 14 C -0.02 -0.99 2.90 -10.89 -0.03 -1.02 16 15 C -0.51 -30.28 9.33 25.60 0.24 -30.04 16 16 H 0.03 2.25 8.06 -2.91 -0.02 2.23 16 17 C 0.02 1.19 5.47 84.66 0.46 1.65 16 18 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 19 Si 0.94 45.68 26.96 68.60 1.85 47.53 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 22 H -0.25 -11.59 6.29 99.48 0.63 -10.96 16 23 C 0.02 0.99 6.03 86.37 0.52 1.51 16 24 H 0.06 1.27 7.65 -2.39 -0.02 1.25 16 25 H 0.08 1.28 7.67 -2.39 -0.02 1.26 16 26 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.15 2.66 6.29 -2.91 -0.02 2.64 16 28 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 29 H 0.16 2.34 6.29 -2.91 -0.02 2.32 16 30 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 32 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 33 H 0.08 2.80 7.47 -2.39 -0.02 2.79 16 34 H 0.03 1.44 6.77 -2.39 -0.02 1.42 16 35 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 36 H 0.05 2.40 7.88 -2.39 -0.02 2.39 16 37 H 0.05 2.74 6.70 -2.39 -0.02 2.72 16 38 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 39 H 0.05 2.71 7.06 -2.39 -0.02 2.69 16 40 H 0.06 2.56 7.96 -2.39 -0.02 2.54 16 Total: -1.00 -73.28 323.73 1.10 -72.18 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.95 Total: 14.55 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: 5.27 Total: -26.95 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -5.30 Total: -85.51 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -1.67 Total: -21.80 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.85 Total: 47.53 kcal Total: -73.28 1.10 -72.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602705535.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.322 kcal (2) G-P(sol) polarization free energy of solvation -73.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds